Wall clock time and date at job start Mon Mar 30 2020 04:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99877 * 2 1 4 4 H 1.48508 * 109.47077 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47288 * 300.00306 * 3 2 1 6 6 H 1.48500 * 109.46672 * 60.00546 * 3 2 1 7 7 C 1.38821 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99875 * 164.38118 * 7 2 1 9 9 N 1.36933 * 119.99588 * 344.38273 * 7 2 1 10 10 C 1.47251 * 121.35185 * 155.44462 * 9 7 2 11 11 C 1.52785 * 107.85814 * 115.73432 * 10 9 7 12 12 C 1.50588 * 110.83134 * 47.40147 * 11 10 9 13 13 C 1.37370 * 122.98225 * 340.24264 * 12 11 10 14 14 C 1.38949 * 119.94202 * 180.65456 * 13 12 11 15 15 C 1.37934 * 120.86763 * 359.58735 * 14 13 12 16 16 C 1.37942 * 119.86029 * 0.09717 * 15 14 13 17 17 C 1.39297 * 119.66077 * 0.12774 * 16 15 14 18 18 C 1.47845 * 119.85862 * 179.97438 * 17 16 15 19 19 N 1.34776 * 120.00023 * 6.27069 * 18 17 16 20 20 O 1.21554 * 119.99991 * 186.27140 * 18 17 16 21 21 C 1.46676 * 121.35647 * 335.46524 * 9 7 2 22 22 H 0.96993 * 120.00125 * 359.97438 * 1 2 3 23 23 H 1.09003 * 109.78090 * 356.14929 * 10 9 7 24 24 H 1.08995 * 109.82858 * 235.35534 * 10 9 7 25 25 H 1.09009 * 109.19586 * 167.73275 * 11 10 9 26 26 H 1.08997 * 109.20418 * 287.06467 * 11 10 9 27 27 H 1.08004 * 119.58511 * 179.68869 * 14 13 12 28 28 H 1.07998 * 120.07223 * 179.97438 * 15 14 13 29 29 H 1.07995 * 120.16781 * 180.14866 * 16 15 14 30 30 H 0.96997 * 120.00162 * 0.02562 * 19 18 17 31 31 H 0.97010 * 119.99918 * 180.02562 * 19 18 17 32 32 H 1.09000 * 109.43259 * 344.34842 * 21 9 7 33 33 H 1.08996 * 109.43356 * 104.26466 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3963 1.2126 7 6 2.0104 -1.2022 -0.0005 8 1 3.0604 -1.2193 -0.2524 9 7 1.3635 -2.3663 0.3182 10 6 1.8520 -3.6701 -0.1610 11 6 2.2711 -4.4903 1.0581 12 6 1.2111 -4.4416 2.1265 13 6 0.2453 -3.4660 2.1778 14 6 -0.6951 -3.4741 3.2006 15 6 -0.6802 -4.4575 4.1678 16 6 0.2794 -5.4476 4.1259 17 6 1.2289 -5.4445 3.1067 18 6 2.2597 -6.5032 3.0579 19 7 2.2050 -7.5373 3.9205 20 8 3.1566 -6.4410 2.2399 21 6 0.1557 -2.3651 1.1504 22 1 -0.4850 0.8400 0.0004 23 1 2.7084 -3.5240 -0.8194 24 1 1.0576 -4.1878 -0.6986 25 1 2.4287 -5.5259 0.7564 26 1 3.2019 -4.0881 1.4580 27 1 -1.4487 -2.7014 3.2383 28 1 -1.4171 -4.4512 4.9573 29 1 0.2942 -6.2212 4.8792 30 1 1.4891 -7.5872 4.5731 31 1 2.8816 -8.2318 3.8888 32 1 0.0647 -1.4038 1.6560 33 1 -0.7188 -2.5281 0.5206 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595904319.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:23 Heat of formation + Delta-G solvation = -10.622321 kcal Electronic energy + Delta-G solvation = -17750.855173 eV Core-core repulsion = 14968.881591 eV Total energy + Delta-G solvation = -2781.973581 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.46190 -39.54412 -37.55139 -35.02333 -34.26963 -32.95282 -31.74591 -30.04952 -27.42515 -25.17642 -24.45870 -23.72414 -21.51635 -20.53902 -18.80237 -18.57853 -17.58748 -16.97229 -16.54097 -16.21163 -15.96526 -15.68253 -15.41010 -15.16833 -14.62201 -14.13506 -13.95054 -13.39312 -13.31581 -12.95893 -12.78675 -12.69112 -12.48231 -12.25561 -12.11086 -11.84781 -11.39708 -10.83542 -10.69305 -10.52651 -9.70619 -9.39958 -8.77948 -7.92554 -5.35398 -0.05932 0.50856 1.44844 1.45843 1.57511 1.92366 2.48265 2.60162 2.91974 3.23545 3.60956 3.91452 3.92132 3.97627 4.20621 4.34116 4.50814 4.62520 4.71796 4.76456 4.96785 5.00907 5.11944 5.14352 5.38048 5.39467 5.42289 5.55433 5.60991 5.88620 5.95836 6.04563 6.30057 6.49640 7.08686 7.37256 7.76245 8.32420 9.16417 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031711 B = 0.006930 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.751511 B = 4039.163030 C = 4570.606667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.971 3.029 4 H -0.270 1.270 5 H -0.288 1.288 6 H -0.286 1.286 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.614 5.614 10 C 0.135 3.865 11 C -0.083 4.083 12 C -0.032 4.032 13 C -0.120 4.120 14 C -0.099 4.099 15 C -0.124 4.124 16 C -0.079 4.079 17 C -0.165 4.165 18 C 0.559 3.441 19 N -0.827 5.827 20 O -0.575 6.575 21 C 0.221 3.779 22 H 0.253 0.747 23 H 0.058 0.942 24 H 0.024 0.976 25 H 0.095 0.905 26 H 0.054 0.946 27 H 0.130 0.870 28 H 0.168 0.832 29 H 0.172 0.828 30 H 0.416 0.584 31 H 0.413 0.587 32 H 0.066 0.934 33 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.674 -13.909 12.323 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.245 4.245 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.393 4.393 8 H 0.084 0.916 9 N -0.337 5.337 10 C 0.010 3.990 11 C -0.122 4.122 12 C -0.033 4.033 13 C -0.121 4.121 14 C -0.118 4.118 15 C -0.142 4.142 16 C -0.098 4.098 17 C -0.168 4.168 18 C 0.346 3.654 19 N -0.392 5.392 20 O -0.456 6.456 21 C 0.095 3.905 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.042 0.958 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.185 0.815 29 H 0.189 0.811 30 H 0.249 0.751 31 H 0.245 0.755 32 H 0.084 0.916 33 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -1.256 -13.594 11.738 18.004 hybrid contribution 0.235 0.959 -0.239 1.016 sum -1.021 -12.635 11.500 17.115 Atomic orbital electron populations 1.70162 1.06470 1.26006 1.55740 1.25776 0.96266 1.01338 1.01101 0.85146 0.78361 0.79522 0.77067 1.19494 1.21449 1.21256 1.19534 0.92553 0.85571 1.41613 0.91591 1.44299 1.30401 1.02134 1.56883 1.21161 0.97110 0.86161 0.94579 1.21020 0.95515 1.01068 0.94564 1.19719 0.95196 0.92798 0.95622 1.20708 0.96042 0.97092 0.98279 1.21507 0.97329 0.99340 0.93621 1.21325 0.99833 0.93886 0.99141 1.21547 0.92591 0.99173 0.96444 1.20019 0.99781 0.97656 0.99355 1.18388 0.84203 0.82320 0.80453 1.43486 1.33450 1.25167 1.37112 1.90764 1.37600 1.78530 1.38726 1.19384 0.87712 0.94322 0.89070 0.93800 0.92298 0.95760 0.88703 0.92799 0.85252 0.81471 0.81113 0.75088 0.75484 0.91574 0.97058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.26 11.09 21.65 0.24 -56.02 16 2 C -0.05 -2.87 5.00 84.86 0.42 -2.45 16 3 Si 0.97 46.21 29.58 68.60 2.03 48.24 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 7 C -0.26 -15.38 9.70 84.04 0.82 -14.57 16 8 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 9 N -0.61 -33.67 2.97 -704.13 -2.09 -35.76 16 10 C 0.14 6.44 6.52 86.16 0.56 7.00 16 11 C -0.08 -3.59 4.43 29.74 0.13 -3.46 16 12 C -0.03 -1.28 5.79 -19.61 -0.11 -1.40 16 13 C -0.12 -5.01 5.81 -19.85 -0.12 -5.12 16 14 C -0.10 -3.23 9.60 22.37 0.21 -3.01 16 15 C -0.12 -2.86 10.03 22.13 0.22 -2.64 16 16 C -0.08 -1.71 9.51 22.45 0.21 -1.50 16 17 C -0.16 -5.05 5.88 -19.99 -0.12 -5.17 16 18 C 0.56 15.88 7.94 86.79 0.69 16.57 16 19 N -0.83 -12.96 8.82 -175.60 -1.55 -14.51 16 20 O -0.57 -21.27 13.90 -3.88 -0.05 -21.33 16 21 C 0.22 11.37 4.85 85.64 0.42 11.79 16 22 H 0.25 14.51 8.31 -92.71 -0.77 13.73 16 23 H 0.06 2.73 7.96 -2.39 -0.02 2.71 16 24 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.10 3.93 5.83 -2.38 -0.01 3.92 16 26 H 0.05 2.50 8.06 -2.39 -0.02 2.48 16 27 H 0.13 3.95 8.05 -2.91 -0.02 3.92 16 28 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 29 H 0.17 1.79 6.42 -2.91 -0.02 1.77 16 30 H 0.42 3.42 6.88 -92.71 -0.64 2.79 16 31 H 0.41 5.16 8.93 -92.70 -0.83 4.33 16 32 H 0.07 3.74 6.34 -2.39 -0.02 3.72 16 33 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -74.85 271.75 1.60 -73.24 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -0.31 Total: 10.08 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 3.34 Total: -3.95 kcal Atomic # 7 Polarization: -102.88 SS G_CDS: -3.40 Total: -106.28 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.33 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -74.85 1.60 -73.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595904319.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.619 kcal (2) G-P(sol) polarization free energy of solvation -74.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds