Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47274 * 2 1 4 4 C 1.50699 * 109.47344 * 239.99457 * 2 1 3 5 5 H 1.07998 * 120.00348 * 240.00376 * 4 2 1 6 6 C 1.37879 * 119.99871 * 60.00136 * 4 2 1 7 7 N 1.31523 * 119.99866 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00027 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47027 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47303 * 120.00413 * 8 6 4 11 11 H 1.48501 * 109.47123 * 240.00121 * 8 6 4 12 12 C 1.50707 * 109.46694 * 119.99703 * 2 1 3 13 13 N 1.30971 * 126.44267 * 240.30870 * 12 2 1 14 14 C 1.35196 * 105.57771 * 180.09767 * 13 12 2 15 15 C 1.48531 * 126.40707 * 179.88550 * 14 13 12 16 16 C 1.39617 * 120.54220 * 179.71183 * 15 14 13 17 17 C 1.38465 * 118.28638 * 179.97438 * 16 15 14 18 18 N 1.32361 * 119.17438 * 359.97438 * 17 16 15 19 19 C 1.31822 * 121.03786 * 0.02562 * 18 17 16 20 20 N 1.31667 * 121.88426 * 0.02562 * 19 18 17 21 21 N 1.30698 * 107.18654 * 359.61855 * 14 13 12 22 22 O 1.21291 * 110.10664 * 0.24529 * 21 14 13 23 23 H 1.08998 * 109.47340 * 300.00432 * 1 2 3 24 24 H 1.09006 * 109.46650 * 60.00140 * 1 2 3 25 25 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99720 * 179.97438 * 7 6 4 27 27 H 1.08001 * 120.86000 * 0.25057 * 16 15 14 28 28 H 1.08002 * 120.40863 * 180.02562 * 17 16 15 29 29 H 1.08001 * 119.05689 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1465 -2.2872 -3.6035 10 1 1.1662 -1.5869 -4.8160 11 1 3.1468 -0.1877 -4.8164 12 6 2.0323 -0.7104 1.2306 13 7 2.7836 -0.1975 2.1728 14 6 2.9815 -1.1956 3.0630 15 6 3.7757 -1.1151 4.3156 16 6 3.8947 -2.2260 5.1528 17 6 4.6467 -2.0991 6.3085 18 7 5.2234 -0.9388 6.5789 19 6 5.0913 0.0913 5.7670 20 7 4.3853 0.0169 4.6581 21 7 2.3387 -2.2430 2.6180 22 8 1.7897 -1.9806 1.5688 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7096 1.1616 -3.4845 27 1 3.4164 -3.1616 4.9032 28 1 4.7619 -2.9367 6.9805 29 1 5.5754 1.0233 6.0191 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596597119.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = 113.908945 kcal Electronic energy + Delta-G solvation = -16679.370775 eV Core-core repulsion = 13799.256931 eV Total energy + Delta-G solvation = -2880.113844 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.97455 -41.04223 -35.63639 -35.04486 -33.60113 -32.71612 -31.56646 -29.74145 -25.79271 -25.44342 -24.68581 -23.32679 -22.64961 -20.48676 -17.95113 -17.55586 -17.43183 -16.36789 -16.04771 -15.61080 -15.03006 -14.93101 -14.19724 -13.90786 -13.66953 -12.98765 -12.08211 -11.87375 -11.84012 -11.24300 -11.09225 -11.07451 -10.76086 -10.62850 -10.51524 -10.40054 -10.18184 -9.97215 -9.46626 -9.44492 -8.97749 -8.62290 -6.26699 -4.36504 0.40258 0.80249 1.88442 2.82826 3.20090 3.24295 3.28627 3.33256 3.62755 3.74236 3.94465 3.98421 4.26656 4.59236 4.80662 4.85112 5.07828 5.26641 5.39423 5.60512 6.09558 6.31054 6.42060 6.56139 6.74528 6.78116 6.79839 7.32065 7.56870 7.74513 7.88101 7.94069 8.61820 8.68820 9.30210 10.79572 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043613 B = 0.004876 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.849456 B = 5740.538695 C = 5772.046242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.124 3.876 3 H 0.079 0.921 4 C -0.525 4.525 5 H 0.064 0.936 6 C 0.071 3.929 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.271 1.271 10 H -0.280 1.280 11 H -0.281 1.281 12 C 0.248 3.752 13 N -0.479 5.479 14 C 0.185 3.815 15 C 0.268 3.732 16 C -0.197 4.197 17 C 0.151 3.849 18 N -0.520 5.520 19 C 0.298 3.702 20 N -0.484 5.484 21 N -0.381 5.381 22 O 0.087 5.913 23 H 0.018 0.982 24 H 0.102 0.898 25 H 0.040 0.960 26 H 0.267 0.733 27 H 0.156 0.844 28 H 0.175 0.825 29 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 -4.254 12.250 13.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.104 3.896 3 H 0.097 0.903 4 C -0.564 4.564 5 H 0.082 0.918 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.196 1.196 10 H -0.206 1.206 11 H -0.207 1.207 12 C 0.030 3.970 13 N -0.211 5.211 14 C -0.085 4.085 15 C 0.121 3.879 16 C -0.221 4.221 17 C -0.015 4.015 18 N -0.235 5.235 19 C 0.010 3.990 20 N -0.199 5.199 21 N -0.090 5.090 22 O 0.025 5.975 23 H 0.037 0.963 24 H 0.121 0.879 25 H 0.059 0.941 26 H 0.077 0.923 27 H 0.173 0.827 28 H 0.192 0.808 29 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 4.101 -3.689 12.962 14.086 hybrid contribution -0.116 -1.149 -1.189 1.657 sum 3.985 -4.837 11.772 13.337 Atomic orbital electron populations 1.21874 0.95349 1.00768 1.01821 1.17928 0.93976 0.95413 0.82299 0.90337 1.20900 1.33080 1.13306 0.89113 0.91817 1.24879 0.94470 0.94825 0.99093 1.69861 1.35593 1.22283 1.24256 0.86316 0.78771 0.79646 0.82081 1.19565 1.20586 1.20684 1.30370 0.89497 0.80248 0.96892 1.72227 1.18004 1.28122 1.02791 1.23194 1.01027 0.87312 0.96999 1.18256 0.90871 0.89600 0.89195 1.22882 1.01903 1.00842 0.96482 1.23200 0.89328 0.95333 0.93610 1.68377 1.21398 1.00787 1.32958 1.25067 0.91530 0.97440 0.84933 1.68343 1.07726 1.25955 1.17847 1.74759 1.12296 1.22942 0.99023 1.85272 1.53564 1.31170 1.27487 0.96292 0.87907 0.94068 0.92298 0.82672 0.80784 0.78027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 8.95 37.16 0.33 -2.75 15 2 C 0.12 2.97 2.77 -92.92 -0.26 2.71 15 3 H 0.08 2.00 8.14 -51.93 -0.42 1.58 15 4 C -0.53 -13.54 8.55 -34.44 -0.29 -13.84 15 5 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 15 7 N -0.88 -23.14 11.32 55.43 0.63 -22.51 15 8 Si 0.90 20.08 29.54 -169.99 -5.02 15.06 15 9 H -0.27 -6.03 7.11 56.52 0.40 -5.62 15 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 11 H -0.28 -6.23 7.11 56.52 0.40 -5.82 15 12 C 0.25 5.59 6.94 -12.99 -0.09 5.50 15 13 N -0.48 -10.76 11.57 -9.89 -0.11 -10.87 15 14 C 0.19 3.71 7.94 -156.14 -1.24 2.47 15 15 C 0.27 4.51 6.80 -82.57 -0.56 3.95 15 16 C -0.20 -2.51 9.82 -38.98 -0.38 -2.90 15 17 C 0.15 1.59 11.30 -17.24 -0.19 1.39 15 18 N -0.52 -6.25 10.43 -14.63 -0.15 -6.40 15 19 C 0.30 3.78 12.28 -92.24 -1.13 2.65 15 20 N -0.48 -7.94 10.40 -11.09 -0.12 -8.06 15 21 N -0.38 -7.58 11.93 30.95 0.37 -7.22 15 22 O 0.09 1.86 11.29 18.04 0.20 2.06 15 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 15 24 H 0.10 2.45 6.07 -51.93 -0.32 2.13 15 25 H 0.04 0.87 8.14 -51.93 -0.42 0.44 15 26 H 0.27 6.63 8.31 -40.82 -0.34 6.29 15 27 H 0.16 1.74 7.95 -52.49 -0.42 1.32 15 28 H 0.18 1.10 8.06 -52.49 -0.42 0.67 15 29 H 0.20 1.81 8.06 -52.49 -0.42 1.39 15 LS Contribution 269.06 15.07 4.05 4.05 Total: -1.00 -28.67 269.06 -6.45 -35.12 By element: Atomic # 1 Polarization: 0.23 SS G_CDS: -2.39 Total: -2.16 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -3.91 Total: 0.91 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.61 Total: -55.05 kcal Atomic # 8 Polarization: 1.86 SS G_CDS: 0.20 Total: 2.06 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.67 -6.45 -35.12 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597119.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.033 kcal (2) G-P(sol) polarization free energy of solvation -28.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds