Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47274 * 2 1 4 4 C 1.50699 * 109.47344 * 239.99457 * 2 1 3 5 5 H 1.07998 * 120.00348 * 240.00376 * 4 2 1 6 6 C 1.37879 * 119.99871 * 60.00136 * 4 2 1 7 7 N 1.31523 * 119.99866 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00027 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47027 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47303 * 120.00413 * 8 6 4 11 11 H 1.48501 * 109.47123 * 240.00121 * 8 6 4 12 12 C 1.50707 * 109.46694 * 119.99703 * 2 1 3 13 13 N 1.30971 * 126.44267 * 240.30870 * 12 2 1 14 14 C 1.35196 * 105.57771 * 180.09767 * 13 12 2 15 15 C 1.48531 * 126.40707 * 179.88550 * 14 13 12 16 16 C 1.39617 * 120.54220 * 179.71183 * 15 14 13 17 17 C 1.38465 * 118.28638 * 179.97438 * 16 15 14 18 18 N 1.32361 * 119.17438 * 359.97438 * 17 16 15 19 19 C 1.31822 * 121.03786 * 0.02562 * 18 17 16 20 20 N 1.31667 * 121.88426 * 0.02562 * 19 18 17 21 21 N 1.30698 * 107.18654 * 359.61855 * 14 13 12 22 22 O 1.21291 * 110.10664 * 0.24529 * 21 14 13 23 23 H 1.08998 * 109.47340 * 300.00432 * 1 2 3 24 24 H 1.09006 * 109.46650 * 60.00140 * 1 2 3 25 25 H 1.09000 * 109.47274 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99720 * 179.97438 * 7 6 4 27 27 H 1.08001 * 120.86000 * 0.25057 * 16 15 14 28 28 H 1.08002 * 120.40863 * 180.02562 * 17 16 15 29 29 H 1.08001 * 119.05689 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1465 -2.2872 -3.6035 10 1 1.1662 -1.5869 -4.8160 11 1 3.1468 -0.1877 -4.8164 12 6 2.0323 -0.7104 1.2306 13 7 2.7836 -0.1975 2.1728 14 6 2.9815 -1.1956 3.0630 15 6 3.7757 -1.1151 4.3156 16 6 3.8947 -2.2260 5.1528 17 6 4.6467 -2.0991 6.3085 18 7 5.2234 -0.9388 6.5789 19 6 5.0913 0.0913 5.7670 20 7 4.3853 0.0169 4.6581 21 7 2.3387 -2.2430 2.6180 22 8 1.7897 -1.9806 1.5688 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 0.7096 1.1616 -3.4845 27 1 3.4164 -3.1616 4.9032 28 1 4.7619 -2.9367 6.9805 29 1 5.5754 1.0233 6.0191 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596597119.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = 95.142144 kcal Electronic energy + Delta-G solvation = -16680.184565 eV Core-core repulsion = 13799.256931 eV Total energy + Delta-G solvation = -2880.927634 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.086 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.59515 -42.05843 -37.26016 -36.76634 -34.83737 -34.12275 -33.02916 -31.44423 -27.38187 -27.04719 -25.87622 -24.86837 -24.12604 -22.08433 -19.47422 -19.06740 -18.53229 -18.12705 -17.61831 -16.85827 -16.55153 -15.99123 -15.67583 -15.39350 -14.79970 -14.62703 -13.82441 -13.61945 -13.32459 -13.04517 -12.87831 -12.56107 -12.31357 -12.23080 -12.05933 -11.98566 -11.90065 -11.43357 -11.01921 -10.59586 -10.52569 -10.49538 -8.22766 -6.39578 -0.79534 -0.12806 0.27420 1.29546 1.44479 1.47626 1.58213 1.81311 2.02292 2.39550 2.68870 2.69518 3.08460 3.12937 3.44326 3.57561 3.90345 3.98743 4.38600 4.50458 4.66735 4.67760 4.78677 4.91162 4.98243 5.21567 5.39749 5.63751 5.77855 5.82101 6.02479 6.62400 6.87587 7.02403 7.30027 8.83344 Molecular weight = 246.09amu Principal moments of inertia in cm(-1) A = 0.043613 B = 0.004876 C = 0.004850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.849456 B = 5740.538695 C = 5772.046242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.126 3.874 3 H 0.055 0.945 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.032 3.968 7 N -0.904 5.904 8 Si 0.964 3.036 9 H -0.272 1.272 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.242 3.758 13 N -0.502 5.502 14 C 0.191 3.809 15 C 0.227 3.773 16 C -0.186 4.186 17 C 0.170 3.830 18 N -0.519 5.519 19 C 0.298 3.702 20 N -0.521 5.521 21 N -0.377 5.377 22 O 0.076 5.924 23 H 0.035 0.965 24 H 0.086 0.914 25 H 0.046 0.954 26 H 0.271 0.729 27 H 0.171 0.829 28 H 0.225 0.775 29 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.334 -5.473 13.672 15.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.106 3.894 3 H 0.073 0.927 4 C -0.583 4.583 5 H 0.073 0.927 6 C -0.170 4.170 7 N -0.541 5.541 8 Si 0.789 3.211 9 H -0.197 1.197 10 H -0.196 1.196 11 H -0.204 1.204 12 C 0.024 3.976 13 N -0.235 5.235 14 C -0.080 4.080 15 C 0.082 3.918 16 C -0.210 4.210 17 C 0.003 3.997 18 N -0.233 5.233 19 C 0.011 3.989 20 N -0.236 5.236 21 N -0.088 5.088 22 O 0.018 5.982 23 H 0.054 0.946 24 H 0.104 0.896 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.188 0.812 28 H 0.241 0.759 29 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 4.895 -4.907 14.367 15.951 hybrid contribution -0.289 -0.770 -1.462 1.678 sum 4.606 -5.677 12.905 14.831 Atomic orbital electron populations 1.21723 0.94124 1.01105 1.01767 1.17719 0.94957 0.94161 0.82581 0.92717 1.21075 1.33520 1.13396 0.90284 0.92703 1.25578 0.94512 0.95421 1.01490 1.69947 1.36017 1.23059 1.25085 0.85404 0.78411 0.78488 0.78795 1.19673 1.19638 1.20353 1.29992 0.90051 0.80803 0.96791 1.72209 1.18348 1.29389 1.03518 1.23818 1.00341 0.86305 0.97549 1.18358 0.92665 0.91595 0.89187 1.23107 1.01638 0.99997 0.96288 1.24007 0.86849 0.95953 0.92876 1.68518 1.21190 1.01176 1.32461 1.25663 0.90610 0.98815 0.83816 1.68260 1.09097 1.26537 1.19732 1.74710 1.12720 1.22772 0.98638 1.85249 1.54149 1.30576 1.28240 0.94603 0.89559 0.93449 0.91928 0.81189 0.75873 0.75135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.78 8.95 71.98 0.64 -5.13 15 2 C 0.13 6.21 2.77 -12.28 -0.03 6.18 15 3 H 0.06 2.92 8.14 -2.39 -0.02 2.90 15 4 C -0.54 -28.60 8.55 25.60 0.22 -28.38 15 5 H 0.05 2.91 7.74 -2.91 -0.02 2.89 15 6 C 0.03 1.62 5.30 84.65 0.45 2.07 15 7 N -0.90 -47.79 11.32 21.45 0.24 -47.55 15 8 Si 0.96 41.12 29.54 68.60 2.03 43.15 15 9 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 15 12 C 0.24 11.18 6.94 88.36 0.61 11.79 15 13 N -0.50 -23.02 11.57 -302.61 -3.50 -26.52 15 14 C 0.19 7.69 7.94 137.36 1.09 8.78 15 15 C 0.23 7.47 6.80 42.04 0.29 7.75 15 16 C -0.19 -4.29 9.82 22.66 0.22 -4.06 15 17 C 0.17 2.89 11.30 84.67 0.96 3.85 15 18 N -0.52 -10.76 10.43 -200.20 -2.09 -12.85 15 19 C 0.30 6.96 12.28 180.91 2.22 9.18 15 20 N -0.52 -16.71 10.40 -189.01 -1.97 -18.67 15 21 N -0.38 -15.00 11.93 -59.25 -0.71 -15.71 15 22 O 0.08 3.29 11.29 74.62 0.84 4.13 15 23 H 0.03 1.43 8.14 -2.39 -0.02 1.41 15 24 H 0.09 4.18 6.07 -2.38 -0.01 4.16 15 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.27 13.48 8.31 -92.71 -0.77 12.71 15 27 H 0.17 3.33 7.95 -2.91 -0.02 3.31 15 28 H 0.22 1.51 8.06 -2.91 -0.02 1.49 15 29 H 0.23 3.63 8.06 -2.91 -0.02 3.60 15 Total: -1.00 -62.46 269.06 2.70 -59.75 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: 1.18 Total: 2.24 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.67 Total: 12.02 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -8.02 Total: -121.30 kcal Atomic # 8 Polarization: 3.29 SS G_CDS: 0.84 Total: 4.13 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -62.46 2.70 -59.75 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596597119.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.896 kcal (2) G-P(sol) polarization free energy of solvation -62.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds