Wall clock time and date at job start Mon Mar 30 2020 04:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30663 * 1 3 3 Si 1.86793 * 120.00455 * 2 1 4 4 H 1.48499 * 109.46952 * 274.98388 * 3 2 1 5 5 H 1.48502 * 109.47010 * 34.98252 * 3 2 1 6 6 H 1.48496 * 109.47377 * 154.98313 * 3 2 1 7 7 C 1.40053 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99895 * 186.09853 * 7 2 1 9 9 C 1.46373 * 120.00061 * 6.10277 * 7 2 1 10 10 O 1.21686 * 120.00320 * 353.58259 * 9 7 2 11 11 N 1.34779 * 119.99762 * 173.85735 * 9 7 2 12 12 C 1.46499 * 119.99820 * 179.72395 * 11 9 7 13 13 C 1.53002 * 109.47286 * 180.02562 * 12 11 9 14 14 H 1.09003 * 115.54620 * 29.32342 * 13 12 11 15 15 C 1.53001 * 117.49459 * 243.62265 * 13 12 11 16 16 C 1.52999 * 60.00004 * 252.50708 * 15 13 12 17 17 H 1.08992 * 117.52107 * 107.48013 * 16 15 13 18 18 C 1.50705 * 117.50188 * 252.51437 * 16 15 13 19 19 C 1.38664 * 120.41868 * 188.61884 * 18 16 15 20 20 C 1.38630 * 118.41996 * 180.02562 * 19 18 16 21 21 C 1.38224 * 119.16357 * 0.02562 * 20 19 18 22 22 N 1.31861 * 120.76053 * 0.02562 * 21 20 19 23 23 C 1.31886 * 121.72504 * 359.70075 * 22 21 20 24 24 H 0.97007 * 120.00283 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00163 * 359.72789 * 11 9 7 26 26 H 1.09007 * 109.46896 * 299.99737 * 12 11 9 27 27 H 1.09000 * 109.47618 * 60.00047 * 12 11 9 28 28 H 1.08993 * 117.50121 * 359.97438 * 15 13 12 29 29 H 1.09005 * 117.49319 * 145.01656 * 15 13 12 30 30 H 1.08004 * 120.79490 * 359.97438 * 19 18 16 31 31 H 1.07998 * 120.41847 * 179.97438 * 20 19 18 32 32 H 1.07994 * 119.62244 * 180.02562 * 21 20 19 33 33 H 1.08003 * 119.61952 * 180.30687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.3829 2.1070 -1.3948 5 1 1.4948 2.6199 0.8027 6 1 3.5869 1.4119 0.5920 7 6 2.0068 -1.2129 0.0005 8 1 3.0823 -1.2156 0.0999 9 6 1.2811 -2.4770 -0.1337 10 8 0.0643 -2.4836 -0.1282 11 7 1.9607 -3.6343 -0.2577 12 6 1.2344 -4.9001 -0.3859 13 6 2.2343 -6.0515 -0.5103 14 1 3.1927 -5.8974 -0.0145 15 6 2.2338 -6.8495 -1.8157 16 6 1.6732 -7.4747 -0.5368 17 1 0.5918 -7.5907 -0.4651 18 6 2.4881 -8.5563 0.1243 19 6 1.9615 -9.2869 1.1786 20 6 2.7476 -10.2718 1.7565 21 6 4.0213 -10.4909 1.2664 22 7 4.4899 -9.7758 0.2624 23 6 3.7685 -8.8347 -0.3148 24 1 -0.4851 0.8401 -0.0004 25 1 2.9307 -3.6291 -0.2620 26 1 0.6125 -5.0531 0.4962 27 1 0.6036 -4.8687 -1.2742 28 1 1.5210 -6.5545 -2.5857 29 1 3.1922 -7.2205 -2.1790 30 1 0.9630 -9.0928 1.5416 31 1 2.3699 -10.8598 2.5798 32 1 4.6399 -11.2565 1.7107 33 1 4.1844 -8.2728 -1.1381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597616238.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:37 Heat of formation + Delta-G solvation = 14.299736 kcal Electronic energy + Delta-G solvation = -16395.957659 eV Core-core repulsion = 13615.064779 eV Total energy + Delta-G solvation = -2780.892880 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.47878 -38.05538 -36.75203 -33.15962 -32.53191 -32.15544 -30.83930 -27.25578 -25.16917 -24.46951 -23.46299 -21.15412 -20.46181 -19.67088 -17.46468 -17.18694 -16.36672 -15.65502 -15.30816 -14.70251 -14.33347 -14.06995 -13.87235 -13.66344 -13.43556 -13.19408 -12.36581 -12.19811 -11.82212 -11.61943 -11.22885 -11.02909 -10.97516 -10.88806 -10.45271 -10.21424 -10.00671 -9.81812 -9.57874 -8.88603 -8.82973 -7.61301 -7.49243 -6.19189 -4.63107 0.92467 1.12302 3.14459 3.21577 3.25237 3.49978 3.97477 4.09748 4.20636 4.47171 4.58914 4.66378 4.75702 4.82123 4.88426 4.92714 5.13358 5.30266 5.38046 5.54993 5.63475 5.79162 5.81396 5.87794 6.01305 6.07527 6.19434 6.45171 6.53922 6.56995 7.44294 7.81410 7.93748 8.10266 8.34056 9.03106 9.53912 10.60119 10.78533 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045652 B = 0.003725 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.183704 B = 7515.470758 C = 7667.220835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.583 6.583 11 N -0.766 5.766 12 C 0.162 3.838 13 C -0.136 4.136 14 H 0.108 0.892 15 C -0.167 4.167 16 C -0.118 4.118 17 H 0.118 0.882 18 C -0.092 4.092 19 C -0.072 4.072 20 C -0.170 4.170 21 C 0.085 3.915 22 N -0.483 5.483 23 C 0.095 3.905 24 H 0.268 0.732 25 H 0.381 0.619 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.153 0.847 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.056 -17.214 0.548 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.358 3.642 10 O -0.466 6.466 11 N -0.422 5.422 12 C 0.037 3.963 13 C -0.154 4.154 14 H 0.126 0.874 15 C -0.204 4.204 16 C -0.137 4.137 17 H 0.136 0.864 18 C -0.094 4.094 19 C -0.098 4.098 20 C -0.190 4.190 21 C -0.072 4.072 22 N -0.191 5.191 23 C -0.062 4.062 24 H 0.079 0.921 25 H 0.212 0.788 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.122 0.878 29 H 0.115 0.885 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.171 0.829 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.813 -17.281 0.258 18.234 hybrid contribution 0.023 0.874 0.377 0.952 sum 5.836 -16.407 0.635 17.425 Atomic orbital electron populations 1.70028 1.07096 1.27243 1.35348 1.25709 0.94600 1.00316 0.92602 0.86357 0.80236 0.81476 0.78669 1.19801 1.20468 1.18885 1.20891 0.94112 0.89594 1.53752 0.91377 1.18228 0.87142 0.82409 0.76395 1.90594 1.14129 1.86485 1.55361 1.46116 1.08607 1.05519 1.81916 1.20437 0.92580 0.82716 1.00541 1.22769 1.01209 0.90811 1.00617 0.87373 1.23256 1.02825 1.03167 0.91141 1.21063 0.98917 0.92101 1.01611 0.86433 1.20221 0.95644 0.96948 0.96576 1.21473 1.00300 0.93891 0.94118 1.22136 0.95926 0.99359 1.01530 1.22741 0.93747 0.97657 0.93091 1.67702 1.36600 1.05845 1.08946 1.22718 0.90706 0.94361 0.98419 0.92132 0.78775 0.92964 0.92997 0.87816 0.88484 0.84671 0.84806 0.82949 0.82727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.18 11.85 55.55 0.66 -22.52 16 2 C 0.09 2.45 5.49 -17.37 -0.10 2.36 16 3 Si 0.91 20.20 29.56 -169.99 -5.03 15.17 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.55 -15.54 9.53 -35.63 -0.34 -15.88 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.55 15.90 7.74 -12.99 -0.10 15.79 16 10 O -0.58 -19.02 15.05 5.20 0.08 -18.95 16 11 N -0.77 -17.11 5.55 -61.72 -0.34 -17.45 16 12 C 0.16 3.05 5.95 -4.04 -0.02 3.03 16 13 C -0.14 -1.87 5.49 -90.62 -0.50 -2.37 16 14 H 0.11 1.47 8.04 -51.93 -0.42 1.05 16 15 C -0.17 -1.92 9.51 -26.73 -0.25 -2.17 16 16 C -0.12 -1.37 5.78 -91.77 -0.53 -1.91 16 17 H 0.12 1.32 8.14 -51.93 -0.42 0.89 16 18 C -0.09 -1.05 5.62 -104.48 -0.59 -1.64 16 19 C -0.07 -0.74 9.89 -39.28 -0.39 -1.12 16 20 C -0.17 -1.54 10.11 -39.44 -0.40 -1.94 16 21 C 0.08 0.85 11.18 -17.54 -0.20 0.65 16 22 N -0.48 -5.93 10.36 -13.25 -0.14 -6.07 16 23 C 0.09 1.11 10.47 -17.55 -0.18 0.93 16 24 H 0.27 7.31 8.29 -40.82 -0.34 6.97 16 25 H 0.38 7.46 8.38 -40.82 -0.34 7.12 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 1.03 7.88 -51.93 -0.41 0.62 16 28 H 0.10 1.19 8.03 -51.93 -0.42 0.78 16 29 H 0.10 0.95 6.20 -51.93 -0.32 0.63 16 30 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.16 1.59 6.04 -52.48 -0.32 1.28 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -35.18 291.66 -7.86 -43.04 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -3.88 Total: 6.66 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -3.60 Total: -4.27 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.18 Total: -46.05 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.08 Total: -18.95 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.03 Total: 15.17 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -35.18 -7.86 -43.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597616238.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.338 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds