Wall clock time and date at job start Mon Mar 30 2020 04:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30663 * 1 3 3 Si 1.86793 * 120.00455 * 2 1 4 4 H 1.48499 * 109.46952 * 274.98388 * 3 2 1 5 5 H 1.48502 * 109.47010 * 34.98252 * 3 2 1 6 6 H 1.48496 * 109.47377 * 154.98313 * 3 2 1 7 7 C 1.40053 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99895 * 186.09853 * 7 2 1 9 9 C 1.46373 * 120.00061 * 6.10277 * 7 2 1 10 10 O 1.21686 * 120.00320 * 353.58259 * 9 7 2 11 11 N 1.34779 * 119.99762 * 173.85735 * 9 7 2 12 12 C 1.46499 * 119.99820 * 179.72395 * 11 9 7 13 13 C 1.53002 * 109.47286 * 180.02562 * 12 11 9 14 14 H 1.09003 * 115.54620 * 29.32342 * 13 12 11 15 15 C 1.53001 * 117.49459 * 243.62265 * 13 12 11 16 16 C 1.52999 * 60.00004 * 252.50708 * 15 13 12 17 17 H 1.08992 * 117.52107 * 107.48013 * 16 15 13 18 18 C 1.50705 * 117.50188 * 252.51437 * 16 15 13 19 19 C 1.38664 * 120.41868 * 188.61884 * 18 16 15 20 20 C 1.38630 * 118.41996 * 180.02562 * 19 18 16 21 21 C 1.38224 * 119.16357 * 0.02562 * 20 19 18 22 22 N 1.31861 * 120.76053 * 0.02562 * 21 20 19 23 23 C 1.31886 * 121.72504 * 359.70075 * 22 21 20 24 24 H 0.97007 * 120.00283 * 0.02562 * 1 2 3 25 25 H 0.97003 * 120.00163 * 359.72789 * 11 9 7 26 26 H 1.09007 * 109.46896 * 299.99737 * 12 11 9 27 27 H 1.09000 * 109.47618 * 60.00047 * 12 11 9 28 28 H 1.08993 * 117.50121 * 359.97438 * 15 13 12 29 29 H 1.09005 * 117.49319 * 145.01656 * 15 13 12 30 30 H 1.08004 * 120.79490 * 359.97438 * 19 18 16 31 31 H 1.07998 * 120.41847 * 179.97438 * 20 19 18 32 32 H 1.07994 * 119.62244 * 180.02562 * 21 20 19 33 33 H 1.08003 * 119.61952 * 180.30687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.3829 2.1070 -1.3948 5 1 1.4948 2.6199 0.8027 6 1 3.5869 1.4119 0.5920 7 6 2.0068 -1.2129 0.0005 8 1 3.0823 -1.2156 0.0999 9 6 1.2811 -2.4770 -0.1337 10 8 0.0643 -2.4836 -0.1282 11 7 1.9607 -3.6343 -0.2577 12 6 1.2344 -4.9001 -0.3859 13 6 2.2343 -6.0515 -0.5103 14 1 3.1927 -5.8974 -0.0145 15 6 2.2338 -6.8495 -1.8157 16 6 1.6732 -7.4747 -0.5368 17 1 0.5918 -7.5907 -0.4651 18 6 2.4881 -8.5563 0.1243 19 6 1.9615 -9.2869 1.1786 20 6 2.7476 -10.2718 1.7565 21 6 4.0213 -10.4909 1.2664 22 7 4.4899 -9.7758 0.2624 23 6 3.7685 -8.8347 -0.3148 24 1 -0.4851 0.8401 -0.0004 25 1 2.9307 -3.6291 -0.2620 26 1 0.6125 -5.0531 0.4962 27 1 0.6036 -4.8687 -1.2742 28 1 1.5210 -6.5545 -2.5857 29 1 3.1922 -7.2205 -2.1790 30 1 0.9630 -9.0928 1.5416 31 1 2.3699 -10.8598 2.5798 32 1 4.6399 -11.2565 1.7107 33 1 4.1844 -8.2728 -1.1381 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597616238.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:37 Heat of formation + Delta-G solvation = -10.337849 kcal Electronic energy + Delta-G solvation = -16397.026025 eV Core-core repulsion = 13615.064779 eV Total energy + Delta-G solvation = -2781.961246 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.30922 -39.60549 -38.37229 -35.01274 -34.32424 -33.30655 -31.80597 -29.15640 -26.90944 -25.33217 -24.30220 -22.26384 -21.74111 -21.48259 -19.14384 -18.26638 -17.46822 -17.22356 -16.71034 -15.97589 -15.77200 -15.66354 -15.03681 -14.93488 -14.68296 -14.21031 -13.94882 -13.76973 -13.14901 -12.99202 -12.74517 -12.64462 -12.61792 -12.28249 -11.99742 -11.89642 -11.14001 -10.92718 -10.63052 -10.38712 -9.94113 -9.68940 -9.46102 -8.30535 -6.85750 0.13222 0.33845 1.40846 1.41967 1.58136 2.24856 2.46266 2.59320 3.05585 3.08374 3.46156 3.60203 3.70995 3.80923 3.96332 3.98702 4.06932 4.12822 4.28474 4.40184 4.58531 4.73332 4.83802 4.85505 4.94267 5.08935 5.20738 5.24446 5.32184 5.38317 5.78385 5.87363 6.23272 6.27565 6.86363 7.02531 7.54327 8.47949 8.66424 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045652 B = 0.003725 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.183704 B = 7515.470758 C = 7667.220835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.536 3.464 10 O -0.634 6.634 11 N -0.753 5.753 12 C 0.166 3.834 13 C -0.147 4.147 14 H 0.113 0.887 15 C -0.153 4.153 16 C -0.101 4.101 17 H 0.120 0.880 18 C -0.106 4.106 19 C -0.081 4.081 20 C -0.165 4.165 21 C 0.078 3.922 22 N -0.510 5.510 23 C 0.083 3.917 24 H 0.275 0.725 25 H 0.396 0.604 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.103 0.897 29 H 0.118 0.882 30 H 0.149 0.851 31 H 0.165 0.835 32 H 0.179 0.821 33 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.853 -17.807 0.820 19.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.612 4.612 8 H 0.106 0.894 9 C 0.340 3.660 10 O -0.522 6.522 11 N -0.408 5.408 12 C 0.042 3.958 13 C -0.165 4.165 14 H 0.131 0.869 15 C -0.190 4.190 16 C -0.120 4.120 17 H 0.138 0.862 18 C -0.108 4.108 19 C -0.107 4.107 20 C -0.184 4.184 21 C -0.079 4.079 22 N -0.218 5.218 23 C -0.073 4.073 24 H 0.085 0.915 25 H 0.230 0.770 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.121 0.879 29 H 0.137 0.863 30 H 0.167 0.833 31 H 0.182 0.818 32 H 0.196 0.804 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.659 -17.927 0.523 19.501 hybrid contribution -0.548 0.921 0.334 1.123 sum 7.110 -17.005 0.858 18.452 Atomic orbital electron populations 1.70191 1.09592 1.28996 1.36390 1.27003 0.95531 1.05045 0.91164 0.84976 0.78880 0.75020 0.79206 1.18717 1.19734 1.17153 1.21444 0.95252 0.90301 1.54162 0.89398 1.18640 0.86795 0.84359 0.76200 1.90545 1.16259 1.87650 1.57764 1.45794 1.09352 1.05424 1.80200 1.20447 0.93451 0.82960 0.98965 1.22447 1.00235 0.90276 1.03577 0.86861 1.23352 1.03854 1.01342 0.90414 1.21036 0.99188 0.90502 1.01313 0.86158 1.20216 0.95749 0.97392 0.97465 1.21788 1.01171 0.93947 0.93774 1.22472 0.95330 0.98849 1.01785 1.23279 0.94550 0.97651 0.92415 1.67721 1.37372 1.06617 1.10115 1.22869 0.90872 0.94648 0.98884 0.91525 0.77044 0.94867 0.94420 0.87865 0.86348 0.83338 0.81767 0.80373 0.82010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.81 11.85 21.84 0.26 -50.55 16 2 C 0.03 1.55 5.49 85.31 0.47 2.02 16 3 Si 1.00 41.11 29.56 68.60 2.03 43.14 16 4 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 7 C -0.58 -32.97 9.53 24.83 0.24 -32.73 16 8 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 9 C 0.54 31.63 7.74 86.36 0.67 32.30 16 10 O -0.63 -43.25 15.05 -4.30 -0.06 -43.31 16 11 N -0.75 -34.28 5.55 -467.40 -2.59 -36.87 16 12 C 0.17 6.42 5.95 86.38 0.51 6.94 16 13 C -0.15 -3.98 5.49 -10.79 -0.06 -4.04 16 14 H 0.11 2.98 8.04 -2.39 -0.02 2.96 16 15 C -0.15 -3.30 9.51 30.59 0.29 -3.01 16 16 C -0.10 -2.26 5.78 -11.54 -0.07 -2.33 16 17 H 0.12 2.61 8.14 -2.39 -0.02 2.59 16 18 C -0.11 -2.27 5.62 -19.77 -0.11 -2.38 16 19 C -0.08 -1.50 9.89 22.47 0.22 -1.28 16 20 C -0.17 -2.56 10.11 22.36 0.23 -2.34 16 21 C 0.08 1.38 11.18 84.69 0.95 2.32 16 22 N -0.51 -11.71 10.36 -195.84 -2.03 -13.74 16 23 C 0.08 1.84 10.47 84.67 0.89 2.72 16 24 H 0.27 15.31 8.29 -92.70 -0.77 14.55 16 25 H 0.40 15.47 8.38 -92.71 -0.78 14.69 16 26 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.04 1.55 7.88 -2.39 -0.02 1.53 16 28 H 0.10 2.27 8.03 -2.39 -0.02 2.25 16 29 H 0.12 2.07 6.20 -2.38 -0.01 2.05 16 30 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.18 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.16 3.09 6.04 -2.91 -0.02 3.07 16 Total: -1.00 -78.49 291.66 2.18 -76.32 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.35 Total: 26.83 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 4.22 Total: -1.80 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -4.37 Total: -101.17 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.06 Total: -43.31 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -78.49 2.18 -76.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597616238.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.980 kcal (2) G-P(sol) polarization free energy of solvation -78.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds