Wall clock time and date at job start Mon Mar 30 2020 04:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99816 * 2 1 4 4 H 1.48500 * 109.46972 * 269.99836 * 3 2 1 5 5 H 1.48501 * 109.47407 * 29.99381 * 3 2 1 6 6 H 1.48494 * 109.47347 * 149.99855 * 3 2 1 7 7 C 1.37878 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99871 * 180.02562 * 7 2 1 10 10 C 1.53495 * 114.20562 * 180.02562 * 9 7 2 11 11 N 1.47069 * 87.98498 * 220.14585 * 10 9 7 12 12 C 1.34781 * 136.05539 * 207.08164 * 11 10 9 13 13 O 1.21279 * 120.00394 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99730 * 180.02562 * 12 11 10 15 15 C 1.50697 * 109.47142 * 180.02562 * 14 12 11 16 16 C 1.38678 * 120.42012 * 89.99952 * 15 14 12 17 17 C 1.38625 * 118.42261 * 180.02562 * 16 15 14 18 18 C 1.38222 * 119.16079 * 359.97438 * 17 16 15 19 19 N 1.31852 * 120.76489 * 0.02562 * 18 17 16 20 20 C 1.31887 * 121.72468 * 359.97438 * 19 18 17 21 21 C 1.47060 * 87.88526 * 27.34359 * 11 10 9 22 22 H 0.96997 * 120.00252 * 0.02562 * 1 2 3 23 23 H 1.08997 * 113.28174 * 313.06558 * 9 7 2 24 24 H 1.09002 * 113.46925 * 105.36606 * 10 9 7 25 25 H 1.09002 * 113.52377 * 334.93526 * 10 9 7 26 26 H 1.09004 * 109.47257 * 59.99915 * 14 12 11 27 27 H 1.08999 * 109.46866 * 300.00026 * 14 12 11 28 28 H 1.08003 * 120.78653 * 0.29511 * 16 15 14 29 29 H 1.07998 * 120.41681 * 180.02562 * 17 16 15 30 30 H 1.07997 * 119.61999 * 179.97438 * 18 17 16 31 31 H 1.08002 * 119.61624 * 180.02562 * 20 19 18 32 32 H 1.09000 * 113.47202 * 87.43684 * 21 11 10 33 33 H 1.09002 * 113.47092 * 217.87916 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.1409 -2.5940 0.0010 11 7 5.1441 -2.0863 0.9492 12 6 6.4182 -2.3886 1.2683 13 8 6.9895 -3.2911 0.6938 14 6 7.1330 -1.6051 2.3389 15 6 8.5333 -2.1378 2.5010 16 6 9.5753 -1.6135 1.7511 17 6 10.8468 -2.1349 1.9331 18 6 11.0325 -3.1525 2.8499 19 7 10.0180 -3.6268 3.5458 20 6 8.7953 -3.1550 3.3988 21 6 4.1430 -1.1081 1.4004 22 1 -0.4850 0.8400 -0.0004 23 1 3.9426 -0.5105 -0.7303 24 1 4.5610 -2.8810 -0.9630 25 1 3.4935 -3.3621 0.4240 26 1 6.5949 -1.7036 3.2817 27 1 7.1753 -0.5541 2.0529 28 1 9.4011 -0.8149 1.0452 29 1 11.6818 -1.7503 1.3663 30 1 12.0199 -3.5644 2.9973 31 1 7.9893 -3.5685 3.9869 32 1 3.4953 -1.4837 2.1926 33 1 4.5646 -0.1292 1.6286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598032955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:09 Heat of formation + Delta-G solvation = 34.813725 kcal Electronic energy + Delta-G solvation = -16877.818315 eV Core-core repulsion = 14097.814988 eV Total energy + Delta-G solvation = -2780.003327 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.40754 -39.48264 -37.34474 -33.53955 -32.70383 -31.97963 -30.01305 -27.82318 -25.25061 -25.08584 -23.63023 -22.37360 -20.19976 -18.39274 -17.26382 -17.16056 -16.61118 -16.49218 -15.63636 -15.07149 -14.76818 -14.21516 -13.83934 -13.59377 -13.33978 -13.11884 -12.95527 -12.41772 -12.20396 -11.87841 -11.76043 -11.50546 -10.91160 -10.75464 -10.15716 -9.98529 -9.82530 -9.55310 -9.44514 -9.28246 -8.95217 -8.71327 -8.12177 -6.26030 -4.29174 1.03210 1.23083 2.95221 3.16066 3.23692 3.25839 3.34427 3.81839 4.25407 4.34862 4.64094 4.71495 4.89508 4.91369 4.94586 4.99104 5.25853 5.40553 5.59608 5.68350 5.69269 5.88893 6.01562 6.04438 6.17533 6.19857 6.26051 6.35094 6.46983 6.63163 7.07831 7.48926 7.90124 8.24910 8.33390 8.53839 8.77810 9.34622 10.85989 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046867 B = 0.004656 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.288565 B = 6012.584532 C = 6267.833370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.514 4.514 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.114 3.886 11 N -0.646 5.646 12 C 0.534 3.466 13 O -0.554 6.554 14 C -0.095 4.095 15 C -0.108 4.108 16 C -0.063 4.063 17 C -0.172 4.172 18 C 0.091 3.909 19 N -0.485 5.485 20 C 0.112 3.888 21 C 0.083 3.917 22 H 0.267 0.733 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.086 0.914 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.381 0.452 5.560 17.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.552 4.552 8 H 0.098 0.902 9 C -0.026 4.026 10 C -0.008 4.008 11 N -0.380 5.380 12 C 0.323 3.677 13 O -0.433 6.433 14 C -0.135 4.135 15 C -0.111 4.111 16 C -0.089 4.089 17 C -0.192 4.192 18 C -0.066 4.066 19 N -0.194 5.194 20 C -0.045 4.045 21 C -0.040 4.040 22 H 0.077 0.923 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.099 0.901 26 H 0.122 0.878 27 H 0.120 0.880 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.105 0.895 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.877 -0.636 5.921 17.896 hybrid contribution 0.132 1.669 -0.584 1.773 sum 17.009 1.033 5.337 17.856 Atomic orbital electron populations 1.69890 1.06393 1.27385 1.49088 1.25017 0.94674 0.99188 0.93791 0.86879 0.80440 0.83534 0.78809 1.20144 1.21208 1.18552 1.20769 0.87437 0.94932 1.52067 0.90193 1.20790 0.96948 0.92814 0.92019 1.23116 0.86474 0.99430 0.91775 1.49988 1.09850 1.37601 1.40551 1.19889 0.80603 0.83737 0.83447 1.90683 1.66223 1.32091 1.54352 1.20539 0.92217 1.00895 0.99891 1.20365 0.95029 0.97967 0.97702 1.21459 0.92327 0.98566 0.96543 1.22084 0.97858 0.98923 1.00349 1.22716 0.97978 0.93569 0.92359 1.67672 0.99996 1.27339 1.24362 1.22593 0.94087 0.92210 0.95622 1.24015 0.87093 0.90632 1.02228 0.92301 0.92168 0.92057 0.90118 0.87767 0.88011 0.85014 0.84868 0.82953 0.83003 0.89545 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.21 13.96 55.43 0.77 -24.44 16 2 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 3 Si 0.88 19.30 27.15 -169.99 -4.62 14.68 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.26 -5.27 5.72 56.52 0.32 -4.94 16 7 C -0.51 -12.97 9.38 -34.44 -0.32 -13.30 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 9 C -0.01 -0.13 2.96 -91.12 -0.27 -0.40 16 10 C 0.11 2.22 8.17 -8.51 -0.07 2.15 16 11 N -0.65 -11.87 3.69 -185.07 -0.68 -12.56 16 12 C 0.53 9.44 8.07 -10.98 -0.09 9.35 16 13 O -0.55 -11.70 16.81 5.56 0.09 -11.61 16 14 C -0.09 -1.24 5.68 -29.04 -0.17 -1.40 16 15 C -0.11 -1.44 4.39 -104.48 -0.46 -1.90 16 16 C -0.06 -0.76 9.86 -39.28 -0.39 -1.15 16 17 C -0.17 -1.83 10.11 -39.44 -0.40 -2.23 16 18 C 0.09 1.04 11.18 -17.55 -0.20 0.84 16 19 N -0.49 -6.71 10.36 -13.26 -0.14 -6.85 16 20 C 0.11 1.52 10.86 -17.55 -0.19 1.33 16 21 C 0.08 1.52 7.44 -8.38 -0.06 1.46 16 22 H 0.27 7.08 8.31 -40.82 -0.34 6.75 16 23 H 0.06 1.27 7.03 -51.93 -0.37 0.91 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 26 H 0.10 1.15 8.10 -51.93 -0.42 0.73 16 27 H 0.10 1.16 8.09 -51.93 -0.42 0.74 16 28 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 29 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 31 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 33 H 0.06 1.00 7.15 -51.93 -0.37 0.63 16 LS Contribution 288.80 15.07 4.35 4.35 Total: -1.00 -30.98 288.80 -7.09 -38.08 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -4.17 Total: 1.69 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: -2.71 Total: -3.35 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: -0.05 Total: -43.85 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.62 Total: 14.68 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.98 -7.09 -38.08 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.889 kcal (2) G-P(sol) polarization free energy of solvation -30.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds