Wall clock time and date at job start Mon Mar 30 2020 04:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99816 * 2 1 4 4 H 1.48500 * 109.46972 * 269.99836 * 3 2 1 5 5 H 1.48501 * 109.47407 * 29.99381 * 3 2 1 6 6 H 1.48494 * 109.47347 * 149.99855 * 3 2 1 7 7 C 1.37878 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99840 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99871 * 180.02562 * 7 2 1 10 10 C 1.53495 * 114.20562 * 180.02562 * 9 7 2 11 11 N 1.47069 * 87.98498 * 220.14585 * 10 9 7 12 12 C 1.34781 * 136.05539 * 207.08164 * 11 10 9 13 13 O 1.21279 * 120.00394 * 0.02562 * 12 11 10 14 14 C 1.50701 * 119.99730 * 180.02562 * 12 11 10 15 15 C 1.50697 * 109.47142 * 180.02562 * 14 12 11 16 16 C 1.38678 * 120.42012 * 89.99952 * 15 14 12 17 17 C 1.38625 * 118.42261 * 180.02562 * 16 15 14 18 18 C 1.38222 * 119.16079 * 359.97438 * 17 16 15 19 19 N 1.31852 * 120.76489 * 0.02562 * 18 17 16 20 20 C 1.31887 * 121.72468 * 359.97438 * 19 18 17 21 21 C 1.47060 * 87.88526 * 27.34359 * 11 10 9 22 22 H 0.96997 * 120.00252 * 0.02562 * 1 2 3 23 23 H 1.08997 * 113.28174 * 313.06558 * 9 7 2 24 24 H 1.09002 * 113.46925 * 105.36606 * 10 9 7 25 25 H 1.09002 * 113.52377 * 334.93526 * 10 9 7 26 26 H 1.09004 * 109.47257 * 59.99915 * 14 12 11 27 27 H 1.08999 * 109.46866 * 300.00026 * 14 12 11 28 28 H 1.08003 * 120.78653 * 0.29511 * 16 15 14 29 29 H 1.07998 * 120.41681 * 180.02562 * 17 16 15 30 30 H 1.07997 * 119.61999 * 179.97438 * 18 17 16 31 31 H 1.08002 * 119.61624 * 180.02562 * 20 19 18 32 32 H 1.09000 * 113.47202 * 87.43684 * 21 11 10 33 33 H 1.09002 * 113.47092 * 217.87916 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.1409 -2.5940 0.0010 11 7 5.1441 -2.0863 0.9492 12 6 6.4182 -2.3886 1.2683 13 8 6.9895 -3.2911 0.6938 14 6 7.1330 -1.6051 2.3389 15 6 8.5333 -2.1378 2.5010 16 6 9.5753 -1.6135 1.7511 17 6 10.8468 -2.1349 1.9331 18 6 11.0325 -3.1525 2.8499 19 7 10.0180 -3.6268 3.5458 20 6 8.7953 -3.1550 3.3988 21 6 4.1430 -1.1081 1.4004 22 1 -0.4850 0.8400 -0.0004 23 1 3.9426 -0.5105 -0.7303 24 1 4.5610 -2.8810 -0.9630 25 1 3.4935 -3.3621 0.4240 26 1 6.5949 -1.7036 3.2817 27 1 7.1753 -0.5541 2.0529 28 1 9.4011 -0.8149 1.0452 29 1 11.6818 -1.7503 1.3663 30 1 12.0199 -3.5644 2.9973 31 1 7.9893 -3.5685 3.9869 32 1 3.4953 -1.4837 2.1926 33 1 4.5646 -0.1292 1.6286 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598032955.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:08 Heat of formation + Delta-G solvation = 14.517963 kcal Electronic energy + Delta-G solvation = -16878.698405 eV Core-core repulsion = 14097.814988 eV Total energy + Delta-G solvation = -2780.883417 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.50761 -40.76722 -38.82403 -34.66895 -34.53130 -32.86474 -31.53705 -29.05920 -26.76746 -26.72688 -24.51763 -23.40944 -21.77686 -19.83055 -19.12221 -18.04031 -18.00366 -17.45612 -16.86818 -16.60013 -15.97948 -15.69630 -15.19022 -14.82043 -14.65180 -14.28165 -13.96626 -13.89982 -13.53764 -13.41261 -13.08796 -12.63237 -12.53083 -12.41416 -11.80395 -11.62146 -11.20835 -10.97134 -10.70670 -10.60354 -10.42767 -9.91761 -9.63182 -8.25500 -6.33972 0.13867 0.34775 1.45033 1.46903 1.57512 1.59855 1.98554 2.41592 2.87008 3.06416 3.48343 3.63204 3.74382 3.89300 4.04589 4.07679 4.10293 4.30186 4.44073 4.50975 4.53036 4.63787 4.70360 4.79050 4.83082 4.86484 4.96286 5.17287 5.30453 5.39448 5.62221 5.78082 6.30016 6.72693 6.87543 7.01197 7.12813 7.33995 8.90134 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046867 B = 0.004656 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.288565 B = 6012.584532 C = 6267.833370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.018 3.982 3 Si 0.942 3.058 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.223 1.223 7 C -0.516 4.516 8 H 0.038 0.962 9 C -0.014 4.014 10 C 0.111 3.889 11 N -0.645 5.645 12 C 0.533 3.467 13 O -0.592 6.592 14 C -0.084 4.084 15 C -0.124 4.124 16 C -0.075 4.075 17 C -0.169 4.169 18 C 0.082 3.918 19 N -0.513 5.513 20 C 0.092 3.908 21 C 0.098 3.902 22 H 0.267 0.733 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.149 0.851 29 H 0.166 0.834 30 H 0.181 0.819 31 H 0.157 0.843 32 H 0.087 0.913 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.202 2.204 6.182 20.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.180 4.180 3 Si 0.765 3.235 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.145 1.145 7 C -0.554 4.554 8 H 0.056 0.944 9 C -0.034 4.034 10 C -0.011 4.011 11 N -0.379 5.379 12 C 0.324 3.676 13 O -0.474 6.474 14 C -0.124 4.124 15 C -0.127 4.127 16 C -0.101 4.101 17 C -0.188 4.188 18 C -0.075 4.075 19 N -0.222 5.222 20 C -0.064 4.064 21 C -0.024 4.024 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.079 0.921 25 H 0.093 0.907 26 H 0.144 0.856 27 H 0.145 0.855 28 H 0.167 0.833 29 H 0.184 0.816 30 H 0.198 0.802 31 H 0.175 0.825 32 H 0.105 0.895 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.723 1.104 6.561 20.815 hybrid contribution -0.720 0.978 -0.830 1.471 sum 19.003 2.082 5.731 19.957 Atomic orbital electron populations 1.70051 1.08593 1.28409 1.51454 1.25922 0.95334 1.03331 0.93412 0.85827 0.80511 0.78082 0.79037 1.20181 1.21599 1.14498 1.20941 0.89855 0.93372 1.51197 0.94394 1.20726 0.94147 0.94087 0.94439 1.22991 0.87076 0.98653 0.92411 1.49967 1.10139 1.37526 1.40266 1.20729 0.79853 0.83388 0.83589 1.90667 1.66843 1.33959 1.55933 1.20554 0.91705 1.01196 0.98928 1.20456 0.95487 0.98429 0.98308 1.21824 0.92676 0.99025 0.96525 1.22464 0.98450 0.98076 0.99799 1.23285 0.98618 0.93641 0.91957 1.67676 1.00637 1.28311 1.25598 1.22789 0.94460 0.92780 0.96390 1.23761 0.86746 0.91989 0.99917 0.92356 0.91416 0.92100 0.90711 0.85566 0.85468 0.83333 0.81629 0.80223 0.82549 0.89452 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.99 13.96 21.45 0.30 -54.69 16 2 C 0.02 0.96 5.47 84.65 0.46 1.43 16 3 Si 0.94 38.49 27.15 68.60 1.86 40.35 16 4 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.22 -7.62 5.72 99.48 0.57 -7.05 16 7 C -0.52 -26.38 9.38 25.60 0.24 -26.14 16 8 H 0.04 2.19 8.06 -2.91 -0.02 2.17 16 9 C -0.01 -0.59 2.96 -11.12 -0.03 -0.62 16 10 C 0.11 4.28 8.17 83.18 0.68 4.96 16 11 N -0.65 -22.25 3.69 -857.81 -3.16 -25.41 16 12 C 0.53 17.58 8.07 87.66 0.71 18.29 16 13 O -0.59 -24.30 16.81 -3.03 -0.05 -24.35 16 14 C -0.08 -1.91 5.68 29.10 0.17 -1.74 16 15 C -0.12 -3.01 4.39 -19.78 -0.09 -3.09 16 16 C -0.07 -1.58 9.86 22.47 0.22 -1.35 16 17 C -0.17 -3.06 10.11 22.36 0.23 -2.83 16 18 C 0.08 1.67 11.18 84.69 0.95 2.62 16 19 N -0.51 -13.51 10.36 -195.85 -2.03 -15.54 16 20 C 0.09 2.38 10.86 84.67 0.92 3.30 16 21 C 0.10 3.29 7.44 83.27 0.62 3.91 16 22 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 23 H 0.07 2.68 7.03 -2.39 -0.02 2.66 16 24 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.07 2.93 8.10 -2.39 -0.02 2.91 16 26 H 0.13 2.31 8.10 -2.38 -0.02 2.29 16 27 H 0.13 2.27 8.09 -2.39 -0.02 2.25 16 28 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 31 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 32 H 0.09 2.94 8.10 -2.39 -0.02 2.92 16 33 H 0.09 2.50 7.15 -2.39 -0.02 2.48 16 Total: -1.00 -68.67 288.80 2.95 -65.71 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.96 Total: 15.22 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.07 Total: -1.28 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -4.89 Total: -95.64 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.05 Total: -24.35 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.86 Total: 40.35 kcal Total: -68.67 2.95 -65.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598032955.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.230 kcal (2) G-P(sol) polarization free energy of solvation -68.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds