Wall clock time and date at job start Mon Mar 30 2020 03:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99801 * 2 1 4 4 H 1.48504 * 109.46947 * 269.99967 * 3 2 1 5 5 H 1.48495 * 109.47114 * 29.99896 * 3 2 1 6 6 H 1.48499 * 109.47186 * 150.00347 * 3 2 1 7 7 C 1.37872 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00335 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99894 * 359.97438 * 7 2 1 10 10 S 1.81403 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.81407 * 103.00016 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47050 * 179.97438 * 11 10 9 13 13 O 1.42896 * 109.46947 * 179.97438 * 12 11 10 14 14 C 1.42899 * 114.00352 * 180.02562 * 13 12 11 15 15 C 1.53175 * 109.54545 * 269.56219 * 14 13 12 16 16 C 1.53094 * 109.16661 * 183.14980 * 15 14 13 17 17 O 1.42898 * 109.41211 * 57.60371 * 16 15 14 18 18 C 1.42897 * 114.10001 * 298.84343 * 17 16 15 19 19 C 1.53089 * 109.41656 * 61.16248 * 18 17 16 20 20 H 0.97002 * 120.00288 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.47278 * 60.00749 * 9 7 2 22 22 H 1.08997 * 109.47528 * 299.99748 * 9 7 2 23 23 H 1.09000 * 109.47216 * 59.99995 * 11 10 9 24 24 H 1.09001 * 109.47045 * 299.99673 * 11 10 9 25 25 H 1.09000 * 109.47001 * 60.00003 * 12 11 10 26 26 H 1.09001 * 109.47043 * 299.99813 * 12 11 10 27 27 H 1.09004 * 109.61153 * 29.77680 * 14 13 12 28 28 H 1.09004 * 109.52259 * 303.05246 * 15 14 13 29 29 H 1.09006 * 109.52330 * 63.24079 * 15 14 13 30 30 H 1.09006 * 109.47665 * 297.62062 * 16 15 14 31 31 H 1.08993 * 109.47955 * 177.58818 * 16 15 14 32 32 H 1.09002 * 109.48425 * 301.17758 * 18 17 16 33 33 H 1.09001 * 109.49443 * 181.15303 * 18 17 16 34 34 H 1.08997 * 109.52675 * 182.48845 * 19 18 17 35 35 H 1.08995 * 109.52428 * 62.29514 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4299 -3.8779 -0.0005 11 6 1.3516 -5.3367 -0.0013 12 6 2.2085 -6.6042 -0.0020 13 8 1.3591 -7.7533 -0.0021 14 6 2.0634 -8.9967 -0.0021 15 6 2.3063 -9.4480 -1.4456 16 6 2.9907 -10.8174 -1.4357 17 8 2.1761 -11.7503 -0.7228 18 6 1.9543 -11.4046 0.6458 19 6 1.2282 -10.0588 0.7195 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8896 23 1 0.7228 -5.3232 -0.8915 24 1 0.7222 -5.3237 0.8885 25 1 2.8377 -6.6179 0.8879 26 1 2.8377 -6.6169 -0.8921 27 1 3.0192 -8.8759 0.5078 28 1 1.3533 -9.5209 -1.9697 29 1 2.9464 -8.7245 -1.9506 30 1 3.9616 -10.7350 -0.9471 31 1 3.1273 -11.1629 -2.4604 32 1 2.9116 -11.3298 1.1617 33 1 1.3445 -12.1730 1.1210 34 1 1.0974 -9.7721 1.7630 35 1 0.2535 -10.1440 0.2392 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600555129.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:55 Heat of formation + Delta-G solvation = -115.795388 kcal Electronic energy + Delta-G solvation = -15330.970190 eV Core-core repulsion = 12647.587162 eV Total energy + Delta-G solvation = -2683.383028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81888 -37.63010 -33.17195 -33.09327 -31.42677 -30.48268 -28.55446 -24.70203 -23.94922 -23.42560 -22.25792 -20.60374 -17.30027 -16.49615 -16.37378 -16.25643 -15.67642 -15.29175 -15.07706 -14.45427 -14.28606 -14.02736 -13.54638 -12.85910 -12.51109 -12.50619 -12.27752 -11.99284 -11.79741 -11.61712 -11.23415 -10.96998 -10.86937 -10.75510 -10.59895 -10.04630 -9.94708 -9.58774 -9.53741 -8.92499 -8.63176 -6.75236 -6.20985 -4.25612 2.39567 3.25381 3.30959 3.36015 3.53220 3.76658 3.82641 4.34250 4.47238 4.53351 4.67102 4.81976 4.89945 5.10142 5.13216 5.15692 5.16128 5.27329 5.35341 5.37968 5.55947 5.59763 5.72730 5.85473 5.92615 6.00122 6.13935 6.85852 7.07314 7.09517 7.17658 7.73234 7.98499 8.76113 9.37516 10.90370 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.077914 B = 0.003229 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.286380 B = 8670.042011 C = 8804.983821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.068 0.932 9 C 0.095 3.905 10 S -0.302 6.302 11 C -0.091 4.091 12 C 0.084 3.916 13 O -0.379 6.379 14 C 0.090 3.910 15 C -0.180 4.180 16 C 0.064 3.936 17 O -0.384 6.384 18 C 0.064 3.936 19 C -0.154 4.154 20 H 0.266 0.734 21 H 0.037 0.963 22 H 0.037 0.963 23 H 0.080 0.920 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.206 -20.368 0.059 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.553 4.553 8 H 0.086 0.914 9 C -0.051 4.051 10 S -0.076 6.076 11 C -0.240 4.240 12 C 0.007 3.993 13 O -0.299 6.299 14 C 0.031 3.969 15 C -0.218 4.218 16 C -0.013 4.013 17 O -0.302 6.302 18 C -0.013 4.013 19 C -0.192 4.192 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.098 0.902 24 H 0.098 0.902 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.070 0.930 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.862 -20.377 -0.020 20.949 hybrid contribution -0.653 1.227 0.087 1.393 sum 4.208 -19.150 0.067 19.607 Atomic orbital electron populations 1.69958 1.06158 1.27403 1.49553 1.24971 0.94987 0.99307 0.94622 0.86330 0.79719 0.82121 0.78363 1.20320 1.20948 1.19528 1.20673 0.93495 0.88674 1.52437 0.91411 1.21060 0.93464 0.90349 1.00261 1.86487 1.21130 1.01879 1.98142 1.23085 1.00931 0.94686 1.05250 1.22208 0.92294 0.83948 1.00878 1.87931 1.33951 1.12939 1.95050 1.22041 0.95260 0.84623 0.94943 1.22752 1.02996 0.97774 0.98299 1.22566 0.92846 0.88438 0.97443 1.87931 1.71338 1.47906 1.23061 1.22580 0.99451 0.96047 0.83185 1.22302 1.00752 0.94232 1.01893 0.92444 0.94468 0.94465 0.90171 0.90167 0.92603 0.92634 0.92059 0.90013 0.90434 0.93064 0.88496 0.93016 0.88303 0.90082 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.91 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.51 -14.55 9.13 -34.44 -0.31 -14.86 16 8 H 0.07 1.91 7.71 -52.49 -0.40 1.51 16 9 C 0.10 2.51 5.70 36.00 0.21 2.71 16 10 S -0.30 -6.61 21.66 -107.50 -2.33 -8.94 16 11 C -0.09 -1.62 6.31 37.16 0.23 -1.39 16 12 C 0.08 1.24 5.76 37.16 0.21 1.46 16 13 O -0.38 -5.39 10.00 -35.23 -0.35 -5.75 16 14 C 0.09 0.99 2.70 -26.55 -0.07 0.92 16 15 C -0.18 -1.80 5.76 -26.59 -0.15 -1.95 16 16 C 0.06 0.55 6.84 37.21 0.25 0.80 16 17 O -0.38 -3.89 10.76 -35.23 -0.38 -4.27 16 18 C 0.06 0.52 6.84 37.20 0.25 0.78 16 19 C -0.15 -1.47 5.79 -26.59 -0.15 -1.62 16 20 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 21 H 0.04 1.02 8.14 -51.92 -0.42 0.59 16 22 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 23 H 0.08 1.43 8.14 -51.92 -0.42 1.01 16 24 H 0.08 1.43 8.14 -51.92 -0.42 1.00 16 25 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 26 H 0.06 0.79 8.00 -51.93 -0.42 0.37 16 27 H 0.06 0.62 7.79 -51.93 -0.40 0.22 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.75 8.00 -51.93 -0.42 0.33 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 304.31 15.07 4.59 4.59 Total: -1.00 -30.09 304.31 -8.23 -38.32 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -5.84 Total: -3.51 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 0.37 Total: -11.42 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.74 Total: -25.35 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.73 Total: -10.02 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -6.61 SS G_CDS: -2.33 Total: -8.94 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.09 -8.23 -38.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600555129.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.479 kcal (2) G-P(sol) polarization free energy of solvation -30.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds