Wall clock time and date at job start Mon Mar 30 2020 03:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.89660 * 2 1 4 4 C 1.54377 * 109.83279 * 120.93532 * 2 1 3 5 5 C 1.55312 * 102.24891 * 98.15633 * 4 2 1 6 6 H 1.08993 * 111.12485 * 276.16911 * 5 4 2 7 7 S 1.81398 * 111.12231 * 152.05465 * 5 4 2 8 8 C 1.81400 * 102.99906 * 178.49784 * 7 5 4 9 9 C 1.53002 * 109.47188 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.47493 * 59.99684 * 9 8 7 11 11 O 1.42895 * 109.47163 * 299.99720 * 9 8 7 12 12 C 1.50703 * 109.47207 * 179.97438 * 9 8 7 13 13 H 1.07994 * 119.99603 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99838 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.54945 * 100.98381 * 34.11355 * 5 4 2 21 21 O 1.43241 * 109.82731 * 239.07557 * 2 1 3 22 22 H 1.09005 * 109.47048 * 299.06389 * 1 2 3 23 23 H 1.09004 * 109.47207 * 59.05859 * 1 2 3 24 24 H 1.08996 * 109.47154 * 179.06772 * 1 2 3 25 25 H 1.09001 * 109.47158 * 180.93549 * 3 2 1 26 26 H 1.08999 * 109.47647 * 300.93776 * 3 2 1 27 27 H 1.09004 * 109.47048 * 60.93505 * 3 2 1 28 28 H 1.09003 * 110.85000 * 339.96828 * 4 2 1 29 29 H 1.09002 * 111.02470 * 216.42290 * 4 2 1 30 30 H 1.08993 * 109.47463 * 59.99675 * 8 7 5 31 31 H 1.09006 * 109.46972 * 299.99331 * 8 7 5 32 32 H 0.96700 * 114.00096 * 299.99823 * 11 9 8 33 33 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 34 34 H 1.09001 * 110.30603 * 82.48570 * 20 5 4 35 35 H 1.08999 * 110.31109 * 204.66064 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0538 -0.7465 1.2456 5 6 2.3681 -2.1570 0.6765 6 1 1.4733 -2.7787 0.6511 7 16 3.6921 -2.9622 1.6195 8 6 3.8436 -4.5791 0.8111 9 6 4.9393 -5.3938 1.5014 10 1 4.6806 -5.5350 2.5508 11 8 6.1827 -4.6959 1.4072 12 6 5.0648 -6.7373 0.8302 13 1 4.4264 -6.9853 -0.0048 14 6 5.9936 -7.6500 1.2830 15 7 6.7706 -7.3481 2.3002 16 14 6.1496 -9.3150 0.4506 17 1 5.1688 -9.4067 -0.6607 18 1 5.8790 -10.3898 1.4390 19 1 7.5245 -9.4724 -0.0879 20 6 2.8404 -1.7991 -0.7552 21 8 2.0159 -0.6925 -1.1559 22 1 -0.3633 0.4992 0.8983 23 1 -0.3634 0.5284 -0.8814 24 1 -0.3633 -1.0275 -0.0167 25 1 3.1406 1.4307 -0.0168 26 1 1.6776 1.9602 -0.8814 27 1 1.7049 1.9503 0.8983 28 1 1.2852 -0.8018 2.0165 29 1 2.9566 -0.2747 1.6335 30 1 4.1028 -4.4379 -0.2381 31 1 2.8950 -5.1113 0.8827 32 1 6.4756 -4.5349 0.4998 33 1 6.6899 -6.4834 2.7322 34 1 3.8897 -1.5043 -0.7448 35 1 2.6909 -2.6455 -1.4255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600571661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:07 Heat of formation + Delta-G solvation = -118.486337 kcal Electronic energy + Delta-G solvation = -16045.720747 eV Core-core repulsion = 13362.221031 eV Total energy + Delta-G solvation = -2683.499716 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.84519 -36.26260 -33.32423 -32.19762 -31.98872 -29.80411 -27.54892 -26.04550 -24.73161 -22.31191 -21.20425 -20.21957 -17.46576 -16.85916 -16.24181 -15.46460 -14.93966 -14.43247 -14.39132 -13.88947 -13.79406 -13.72310 -13.39401 -13.03845 -12.58793 -12.35573 -12.15113 -11.85659 -11.64450 -11.51447 -11.41897 -10.99253 -10.80851 -10.65566 -10.21269 -10.18452 -9.73539 -9.65198 -9.29947 -8.54629 -8.17317 -7.28260 -6.44029 -4.29735 1.94540 3.00233 3.38392 3.41489 3.54642 3.69499 4.29906 4.45183 4.62541 4.66711 4.88472 4.95223 5.09127 5.25844 5.39458 5.48163 5.50353 5.56373 5.66775 5.68831 5.70815 5.78193 5.79480 5.88273 5.98775 6.04238 6.10661 6.44922 6.95251 7.30244 7.83380 8.24433 8.76120 9.01520 9.56606 10.96015 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.053289 B = 0.004592 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.306579 B = 6096.594392 C = 6288.810971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.103 3.897 3 C -0.153 4.153 4 C -0.119 4.119 5 C -0.108 4.108 6 H 0.094 0.906 7 S -0.234 6.234 8 C -0.094 4.094 9 C 0.230 3.770 10 H 0.058 0.942 11 O -0.573 6.573 12 C -0.649 4.649 13 H 0.052 0.948 14 C 0.037 3.963 15 N -0.889 5.889 16 Si 1.074 2.926 17 H -0.289 1.289 18 H -0.285 1.285 19 H -0.285 1.285 20 C 0.061 3.939 21 O -0.374 6.374 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.355 0.645 33 H 0.286 0.714 34 H 0.075 0.925 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.674 13.515 -4.389 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.062 3.938 3 C -0.211 4.211 4 C -0.158 4.158 5 C -0.237 4.237 6 H 0.112 0.888 7 S -0.005 6.005 8 C -0.242 4.242 9 C 0.171 3.829 10 H 0.075 0.925 11 O -0.377 6.377 12 C -0.689 4.689 13 H 0.070 0.930 14 C -0.173 4.173 15 N -0.523 5.523 16 Si 0.902 3.098 17 H -0.215 1.215 18 H -0.212 1.212 19 H -0.211 1.211 20 C -0.017 4.017 21 O -0.294 6.294 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.200 0.800 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.376 12.553 -2.997 15.952 hybrid contribution -1.635 0.744 -1.523 2.355 sum -11.012 13.297 -4.520 17.846 Atomic orbital electron populations 1.22081 0.94004 1.02589 1.02274 1.22075 0.94107 0.92564 0.85009 1.22097 1.01846 0.94894 1.02249 1.23022 1.02541 0.92520 0.97672 1.24835 1.00947 0.99717 0.98209 0.88762 1.87082 1.45870 1.19393 1.48121 1.24468 1.05050 0.92663 1.02044 1.19319 0.78876 0.88514 0.96218 0.92470 1.86517 1.40926 1.79231 1.30990 1.22398 1.25268 1.00695 1.20509 0.92974 1.25831 0.92329 1.03471 0.95649 1.70573 1.36232 1.26024 1.19445 0.83496 0.76124 0.74731 0.75439 1.21537 1.21158 1.21145 1.23817 0.95300 0.89162 0.93445 1.88420 1.67427 1.43629 1.29897 0.91478 0.91898 0.92146 0.91936 0.91916 0.91504 0.89448 0.89439 0.91019 0.90600 0.80033 0.90209 0.90725 0.89752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.73 37.16 0.32 -1.12 16 2 C 0.10 1.16 1.27 -89.90 -0.11 1.04 16 3 C -0.15 -1.47 8.75 37.16 0.33 -1.15 16 4 C -0.12 -1.41 5.58 -24.78 -0.14 -1.55 16 5 C -0.11 -1.52 3.60 -24.48 -0.09 -1.61 16 6 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 7 S -0.23 -4.20 20.82 -107.50 -2.24 -6.44 16 8 C -0.09 -1.90 5.54 37.16 0.21 -1.69 16 9 C 0.23 5.71 2.48 -27.88 -0.07 5.64 16 10 H 0.06 1.57 8.01 -51.93 -0.42 1.15 16 11 O -0.57 -14.31 11.61 -35.23 -0.41 -14.72 16 12 C -0.65 -17.68 8.76 -34.44 -0.30 -17.98 16 13 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 14 C 0.04 1.04 5.40 -17.82 -0.10 0.94 16 15 N -0.89 -26.85 13.53 55.43 0.75 -26.10 16 16 Si 1.07 24.62 29.90 -169.99 -5.08 19.53 16 17 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.06 0.85 7.25 38.18 0.28 1.13 16 21 O -0.37 -5.15 10.68 -35.23 -0.38 -5.53 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.92 7.82 -51.93 -0.41 0.51 16 29 H 0.09 1.07 7.74 -51.93 -0.40 0.67 16 30 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 31 H 0.08 1.50 8.14 -51.92 -0.42 1.07 16 32 H 0.35 7.95 9.04 45.56 0.41 8.36 16 33 H 0.29 8.83 6.47 -40.82 -0.26 8.56 16 34 H 0.07 1.07 8.02 -51.93 -0.42 0.65 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 301.49 15.07 4.54 4.54 Total: -1.00 -30.17 301.49 -7.41 -37.58 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.92 Total: 7.47 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 0.32 Total: -16.35 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.75 Total: -26.10 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.79 Total: -20.25 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.08 Total: 19.53 kcal Atomic # 16 Polarization: -4.20 SS G_CDS: -2.24 Total: -6.44 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.17 -7.41 -37.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600571661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.904 kcal (2) G-P(sol) polarization free energy of solvation -30.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds