Wall clock time and date at job start Mon Mar 30 2020 03:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.89660 * 2 1 4 4 C 1.54377 * 109.83279 * 120.93532 * 2 1 3 5 5 C 1.55312 * 102.24891 * 98.15633 * 4 2 1 6 6 H 1.08993 * 111.12485 * 276.16911 * 5 4 2 7 7 S 1.81398 * 111.12231 * 152.05465 * 5 4 2 8 8 C 1.81400 * 102.99906 * 178.49784 * 7 5 4 9 9 C 1.53002 * 109.47188 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.47493 * 59.99684 * 9 8 7 11 11 O 1.42895 * 109.47163 * 299.99720 * 9 8 7 12 12 C 1.50703 * 109.47207 * 179.97438 * 9 8 7 13 13 H 1.07994 * 119.99603 * 359.97438 * 12 9 8 14 14 C 1.37875 * 119.99838 * 180.02562 * 12 9 8 15 15 N 1.31513 * 120.00380 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99848 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47297 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47261 * 239.99776 * 16 14 12 19 19 H 1.48500 * 109.47454 * 119.99769 * 16 14 12 20 20 C 1.54945 * 100.98381 * 34.11355 * 5 4 2 21 21 O 1.43241 * 109.82731 * 239.07557 * 2 1 3 22 22 H 1.09005 * 109.47048 * 299.06389 * 1 2 3 23 23 H 1.09004 * 109.47207 * 59.05859 * 1 2 3 24 24 H 1.08996 * 109.47154 * 179.06772 * 1 2 3 25 25 H 1.09001 * 109.47158 * 180.93549 * 3 2 1 26 26 H 1.08999 * 109.47647 * 300.93776 * 3 2 1 27 27 H 1.09004 * 109.47048 * 60.93505 * 3 2 1 28 28 H 1.09003 * 110.85000 * 339.96828 * 4 2 1 29 29 H 1.09002 * 111.02470 * 216.42290 * 4 2 1 30 30 H 1.08993 * 109.47463 * 59.99675 * 8 7 5 31 31 H 1.09006 * 109.46972 * 299.99331 * 8 7 5 32 32 H 0.96700 * 114.00096 * 299.99823 * 11 9 8 33 33 H 0.97001 * 119.99667 * 0.02562 * 15 14 12 34 34 H 1.09001 * 110.30603 * 82.48570 * 20 5 4 35 35 H 1.08999 * 110.31109 * 204.66064 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0507 1.4387 0.0000 4 6 2.0538 -0.7465 1.2456 5 6 2.3681 -2.1570 0.6765 6 1 1.4733 -2.7787 0.6511 7 16 3.6921 -2.9622 1.6195 8 6 3.8436 -4.5791 0.8111 9 6 4.9393 -5.3938 1.5014 10 1 4.6806 -5.5350 2.5508 11 8 6.1827 -4.6959 1.4072 12 6 5.0648 -6.7373 0.8302 13 1 4.4264 -6.9853 -0.0048 14 6 5.9936 -7.6500 1.2830 15 7 6.7706 -7.3481 2.3002 16 14 6.1496 -9.3150 0.4506 17 1 5.1688 -9.4067 -0.6607 18 1 5.8790 -10.3898 1.4390 19 1 7.5245 -9.4724 -0.0879 20 6 2.8404 -1.7991 -0.7552 21 8 2.0159 -0.6925 -1.1559 22 1 -0.3633 0.4992 0.8983 23 1 -0.3634 0.5284 -0.8814 24 1 -0.3633 -1.0275 -0.0167 25 1 3.1406 1.4307 -0.0168 26 1 1.6776 1.9602 -0.8814 27 1 1.7049 1.9503 0.8983 28 1 1.2852 -0.8018 2.0165 29 1 2.9566 -0.2747 1.6335 30 1 4.1028 -4.4379 -0.2381 31 1 2.8950 -5.1113 0.8827 32 1 6.4756 -4.5349 0.4998 33 1 6.6899 -6.4834 2.7322 34 1 3.8897 -1.5043 -0.7448 35 1 2.6909 -2.6455 -1.4255 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600571661.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:07 Heat of formation + Delta-G solvation = -138.640627 kcal Electronic energy + Delta-G solvation = -16046.594703 eV Core-core repulsion = 13362.221031 eV Total energy + Delta-G solvation = -2684.373672 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.83104 -38.26354 -34.33213 -34.22745 -33.05426 -31.65076 -28.27989 -27.20842 -26.60276 -23.74793 -22.85058 -21.12449 -19.53837 -18.02282 -17.51064 -16.81944 -16.47009 -16.16109 -15.69763 -15.66344 -14.97838 -14.81616 -14.62560 -14.39249 -14.08845 -13.46426 -13.38365 -13.05021 -12.80088 -12.67978 -12.62683 -12.46941 -12.26733 -11.98447 -11.91838 -11.65046 -11.49954 -10.86765 -10.67347 -10.63405 -10.19704 -8.74277 -8.66289 -6.53367 0.56884 1.52680 1.56227 1.62095 1.78176 2.54573 2.72581 3.12728 3.27913 3.60922 3.78470 3.87968 3.93266 4.00400 4.05115 4.14183 4.17810 4.51386 4.58436 4.69004 4.73410 4.74307 4.82813 4.83983 4.91926 4.96030 5.23301 5.28002 5.34450 5.73076 5.99126 6.06395 6.49317 7.09120 7.43546 8.71163 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.053289 B = 0.004592 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.306579 B = 6096.594392 C = 6288.810971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.097 3.903 3 C -0.152 4.152 4 C -0.115 4.115 5 C -0.096 4.096 6 H 0.101 0.899 7 S -0.254 6.254 8 C -0.083 4.083 9 C 0.229 3.771 10 H 0.023 0.977 11 O -0.583 6.583 12 C -0.657 4.657 13 H 0.056 0.944 14 C -0.015 4.015 15 N -0.919 5.919 16 Si 1.123 2.877 17 H -0.269 1.269 18 H -0.280 1.280 19 H -0.279 1.279 20 C 0.064 3.936 21 O -0.387 6.387 22 H 0.088 0.912 23 H 0.066 0.934 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.105 0.895 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.365 0.635 33 H 0.268 0.732 34 H 0.067 0.933 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 14.189 -5.359 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.057 3.943 3 C -0.209 4.209 4 C -0.154 4.154 5 C -0.226 4.226 6 H 0.119 0.881 7 S -0.025 6.025 8 C -0.231 4.231 9 C 0.171 3.829 10 H 0.041 0.959 11 O -0.388 6.388 12 C -0.696 4.696 13 H 0.075 0.925 14 C -0.217 4.217 15 N -0.554 5.554 16 Si 0.944 3.056 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.205 1.205 20 C -0.015 4.015 21 O -0.307 6.307 22 H 0.107 0.893 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.211 0.789 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.826 13.242 -3.976 17.561 hybrid contribution -1.247 0.668 -1.220 1.868 sum -12.073 13.911 -5.195 19.138 Atomic orbital electron populations 1.22090 0.92415 1.02642 1.03588 1.22322 0.95325 0.92973 0.83666 1.22106 1.01268 0.94014 1.03555 1.23077 1.02966 0.90817 0.98500 1.24884 0.99211 1.00497 0.97970 0.88055 1.87095 1.48358 1.18063 1.48989 1.24057 1.03313 0.93794 1.01985 1.19097 0.80293 0.88951 0.94603 0.95886 1.86466 1.41308 1.79136 1.31933 1.22784 1.24721 1.01809 1.20266 0.92541 1.27354 0.91849 1.07173 0.95341 1.70722 1.38143 1.25321 1.21232 0.82874 0.76861 0.70646 0.75192 1.19324 1.20550 1.20507 1.23716 0.95028 0.89488 0.93222 1.88418 1.67447 1.43624 1.31249 0.89324 0.91521 0.92697 0.92872 0.91444 0.89432 0.87673 0.89885 0.90097 0.90295 0.78893 0.92128 0.91524 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.73 71.98 0.63 -1.78 16 2 C 0.10 1.95 1.27 -10.32 -0.01 1.93 16 3 C -0.15 -2.55 8.75 71.98 0.63 -1.92 16 4 C -0.12 -2.47 5.58 31.86 0.18 -2.29 16 5 C -0.10 -2.56 3.60 32.05 0.12 -2.44 16 6 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 7 S -0.25 -8.98 20.82 -56.49 -1.18 -10.16 16 8 C -0.08 -3.33 5.54 71.98 0.40 -2.93 16 9 C 0.23 11.60 2.48 29.85 0.07 11.67 16 10 H 0.02 1.32 8.01 -2.38 -0.02 1.31 16 11 O -0.58 -29.70 11.61 -148.98 -1.73 -31.43 16 12 C -0.66 -35.83 8.76 25.60 0.22 -35.61 16 13 H 0.06 2.97 7.74 -2.91 -0.02 2.95 16 14 C -0.01 -0.82 5.40 84.65 0.46 -0.37 16 15 N -0.92 -56.54 13.53 21.45 0.29 -56.25 16 16 Si 1.12 48.94 29.90 68.60 2.05 50.99 16 17 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 20 C 0.06 1.69 7.25 72.65 0.53 2.22 16 21 O -0.39 -9.98 10.68 -148.98 -1.59 -11.57 16 22 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 23 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.10 1.89 7.82 -2.39 -0.02 1.88 16 29 H 0.08 1.88 7.74 -2.39 -0.02 1.86 16 30 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 31 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 32 H 0.36 16.52 9.04 -74.06 -0.67 15.85 16 33 H 0.27 17.12 6.47 -92.71 -0.60 16.52 16 34 H 0.07 1.86 8.02 -2.39 -0.02 1.84 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -64.73 301.49 1.62 -63.11 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.56 Total: 26.83 kcal Atomic # 6 Polarization: -34.73 SS G_CDS: 3.22 Total: -31.51 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.29 Total: -56.25 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -3.32 Total: -43.00 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.05 Total: 50.99 kcal Atomic # 16 Polarization: -8.98 SS G_CDS: -1.18 Total: -10.16 kcal Total: -64.73 1.62 -63.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600571661.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.535 kcal (2) G-P(sol) polarization free energy of solvation -64.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds