Wall clock time and date at job start Mon Mar 30 2020 04:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99818 * 2 1 4 4 H 1.48496 * 109.47297 * 240.00212 * 3 2 1 5 5 H 1.48496 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46797 * 120.00011 * 3 2 1 7 7 C 1.37877 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99934 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00104 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47331 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99957 * 180.02562 * 10 9 7 12 12 O 1.21550 * 120.00312 * 359.97438 * 11 10 9 13 13 C 1.47854 * 119.99854 * 180.02562 * 11 10 9 14 14 C 1.39608 * 120.13112 * 359.97438 * 13 11 10 15 15 C 1.37942 * 119.83334 * 179.97438 * 14 13 11 16 16 C 1.38376 * 120.16328 * 0.25976 * 15 14 13 17 17 C 1.38296 * 120.33924 * 359.47918 * 16 15 14 18 18 C 1.38206 * 120.04906 * 0.52536 * 17 16 15 19 19 C 1.51163 * 108.32393 * 179.73823 * 18 17 16 20 20 N 1.48053 * 105.65837 * 342.51164 * 19 18 17 21 21 C 1.48058 * 103.84627 * 27.56419 * 20 19 18 22 22 H 0.96993 * 119.99849 * 359.97438 * 1 2 3 23 23 H 1.08998 * 109.47086 * 60.00212 * 9 7 2 24 24 H 1.09003 * 109.47136 * 300.00012 * 9 7 2 25 25 H 0.97006 * 119.99965 * 359.97438 * 10 9 7 26 26 H 1.07998 * 120.08426 * 0.02562 * 14 13 11 27 27 H 1.08002 * 119.91513 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.82522 * 179.72352 * 16 15 14 29 29 H 1.08997 * 110.20990 * 101.56490 * 19 18 17 30 30 H 1.09001 * 110.20505 * 223.46933 * 19 18 17 31 31 H 1.00899 * 111.00314 * 146.90052 * 20 19 18 32 32 H 1.09003 * 110.20624 * 213.37883 * 21 20 19 33 33 H 1.08995 * 110.20634 * 91.47987 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5589 -5.1055 -0.0011 13 6 2.7148 -6.0071 -0.0005 14 6 4.0879 -5.7551 0.0001 15 6 4.9788 -6.8082 0.0011 16 6 4.5146 -8.1117 -0.0038 17 6 3.1558 -8.3694 0.0011 18 6 2.2530 -7.3229 -0.0001 19 6 0.8561 -7.9005 -0.0005 20 7 1.0065 -9.3100 -0.4279 21 6 2.3780 -9.6660 0.0017 22 1 -0.4849 0.8400 0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 3.1569 -3.4354 -0.0009 26 1 4.4517 -4.7382 0.0005 27 1 6.0414 -6.6147 0.0011 28 1 5.2170 -8.9321 -0.0074 29 1 0.4292 -7.8542 1.0013 30 1 0.2249 -7.3587 -0.7050 31 1 0.3223 -9.8993 0.0220 32 1 2.8214 -10.3714 -0.7012 33 1 2.3594 -10.0936 1.0041 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692917297.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:18 Heat of formation + Delta-G solvation = -28.745342 kcal Electronic energy + Delta-G solvation = -16972.443381 eV Core-core repulsion = 14189.683926 eV Total energy + Delta-G solvation = -2782.759455 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.64813 -39.97516 -37.30746 -36.20735 -34.42387 -32.66417 -31.08507 -29.61198 -28.27612 -25.63422 -24.50907 -23.04479 -22.14219 -21.25481 -19.15097 -17.90803 -17.55467 -17.03176 -16.59823 -16.48207 -16.18984 -15.97125 -15.50959 -14.71885 -14.58000 -14.18821 -14.06175 -13.96456 -13.51150 -13.21781 -13.04297 -12.93451 -12.68495 -12.43647 -12.27655 -12.22663 -11.53823 -10.84394 -10.81564 -10.26719 -10.08790 -9.74534 -9.26872 -8.30706 -6.48235 -0.16154 0.27100 1.42607 1.47163 1.55374 1.88502 2.27944 2.49843 2.79214 3.04251 3.20282 3.41277 3.52339 3.79284 4.03320 4.29614 4.31223 4.43994 4.49482 4.57209 4.82939 4.84238 4.99882 5.06767 5.18961 5.27648 5.31334 5.37650 5.43381 5.58158 5.66043 5.80661 5.88819 6.29406 6.60686 6.81180 7.19408 7.37031 8.81502 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.040498 B = 0.004867 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.231238 B = 5752.236416 C = 6411.448890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.559 4.559 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.700 5.700 11 C 0.533 3.467 12 O -0.593 6.593 13 C -0.135 4.135 14 C -0.090 4.090 15 C -0.115 4.115 16 C -0.068 4.068 17 C -0.123 4.123 18 C -0.074 4.074 19 C 0.084 3.916 20 N -0.666 5.666 21 C 0.083 3.917 22 H 0.270 0.730 23 H -0.011 1.011 24 H -0.010 1.010 25 H 0.407 0.593 26 H 0.144 0.856 27 H 0.172 0.828 28 H 0.168 0.832 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.359 0.641 32 H 0.112 0.888 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.057 -17.675 1.347 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.597 4.597 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.350 5.350 11 C 0.321 3.679 12 O -0.475 6.475 13 C -0.139 4.139 14 C -0.109 4.109 15 C -0.132 4.132 16 C -0.086 4.086 17 C -0.123 4.123 18 C -0.076 4.076 19 C -0.045 4.045 20 N -0.296 5.296 21 C -0.045 4.045 22 H 0.078 0.922 23 H 0.007 0.993 24 H 0.007 0.993 25 H 0.244 0.756 26 H 0.162 0.838 27 H 0.190 0.810 28 H 0.186 0.814 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.176 0.824 32 H 0.130 0.870 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.159 -17.580 0.618 21.384 hybrid contribution -0.339 1.279 0.964 1.637 sum 11.820 -16.301 1.582 20.197 Atomic orbital electron populations 1.70136 1.08345 1.28730 1.49713 1.26088 0.95784 1.03959 0.93655 0.85171 0.77899 0.76367 0.79568 1.18574 1.21030 1.18533 1.21565 0.94329 0.90412 1.53361 0.89718 1.18597 0.88634 0.84114 0.94236 1.46130 1.11307 1.05265 1.72256 1.19059 0.88403 0.83957 0.76441 1.90669 1.18456 1.85521 1.52900 1.19506 0.94353 0.91431 1.08569 1.21579 0.90507 1.01604 0.97163 1.21480 1.01292 0.91223 0.99217 1.21130 0.93353 0.98291 0.95859 1.20971 0.94466 0.95365 1.01510 1.20665 0.97033 0.92534 0.97346 1.21267 0.93690 0.89929 0.99632 1.63534 1.04922 1.02033 1.59150 1.21546 0.87842 0.93654 1.01492 0.92170 0.99341 0.99253 0.75636 0.83846 0.81028 0.81426 0.92538 0.91189 0.82389 0.86974 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.00 0.27 5.46 84.65 0.46 0.74 16 3 Si 0.99 42.47 29.54 68.60 2.03 44.49 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.56 -30.94 9.28 25.60 0.24 -30.70 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.27 15.18 5.43 85.63 0.46 15.65 16 10 N -0.70 -31.84 5.50 -469.71 -2.58 -34.42 16 11 C 0.53 24.03 7.77 86.79 0.67 24.71 16 12 O -0.59 -31.47 14.87 -3.87 -0.06 -31.52 16 13 C -0.14 -4.68 5.87 -20.11 -0.12 -4.80 16 14 C -0.09 -2.30 9.54 22.53 0.21 -2.09 16 15 C -0.11 -2.06 10.03 22.23 0.22 -1.83 16 16 C -0.07 -1.17 10.04 22.32 0.22 -0.94 16 17 C -0.12 -2.84 6.26 -19.70 -0.12 -2.96 16 18 C -0.07 -2.36 6.10 -19.43 -0.12 -2.48 16 19 C 0.08 2.66 6.36 85.48 0.54 3.20 16 20 N -0.67 -15.63 7.72 -514.66 -3.97 -19.60 16 21 C 0.08 1.50 7.46 85.50 0.64 2.14 16 22 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 23 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 24 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 25 H 0.41 15.29 6.36 -92.70 -0.59 14.70 16 26 H 0.14 3.22 6.41 -2.91 -0.02 3.20 16 27 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 28 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.07 2.70 7.28 -2.39 -0.02 2.69 16 31 H 0.36 6.41 8.92 -89.70 -0.80 5.61 16 32 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -75.89 283.51 -1.22 -77.11 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.24 Total: 19.87 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 3.32 Total: 0.62 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -6.27 Total: -110.56 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: -0.06 Total: -31.52 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -75.89 -1.22 -77.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692917297.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.361 kcal (2) G-P(sol) polarization free energy of solvation -75.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds