Wall clock time and date at job start Mon Mar 30 2020 04:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46248 * 2 1 4 4 C 1.52990 * 109.47191 * 240.00129 * 2 1 3 5 5 C 1.50704 * 109.47273 * 174.99572 * 4 2 1 6 6 H 1.08003 * 119.99538 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00468 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99776 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00200 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46844 * 90.00186 * 9 7 5 11 11 H 1.48497 * 109.47148 * 210.00113 * 9 7 5 12 12 H 1.48502 * 109.47311 * 330.00193 * 9 7 5 13 13 S 1.81399 * 109.47200 * 119.99587 * 2 1 3 14 14 O 1.42098 * 109.46970 * 182.96511 * 13 2 1 15 15 C 1.81393 * 103.00195 * 299.35864 * 13 2 1 16 16 H 1.09000 * 110.54573 * 301.41913 * 15 13 2 17 17 C 1.54809 * 110.49179 * 64.03573 * 15 13 2 18 18 C 1.54992 * 102.09495 * 139.55250 * 17 15 13 19 19 O 1.44378 * 103.49526 * 322.98169 * 18 17 15 20 20 C 1.43748 * 106.97315 * 40.05249 * 19 18 17 21 21 H 1.09007 * 109.87059 * 92.91594 * 20 19 18 22 22 C 1.53000 * 110.00281 * 213.99399 * 20 19 18 23 23 H 1.09002 * 109.46773 * 190.32240 * 1 2 3 24 24 H 1.09000 * 109.47381 * 310.32554 * 1 2 3 25 25 H 1.08999 * 109.47648 * 70.33040 * 1 2 3 26 26 H 1.09000 * 109.47308 * 294.99568 * 4 2 1 27 27 H 1.09001 * 109.47712 * 54.99875 * 4 2 1 28 28 H 0.97006 * 119.99846 * 179.97438 * 8 7 5 29 29 H 1.08996 * 110.90842 * 257.75591 * 17 15 13 30 30 H 1.09003 * 110.90405 * 21.32577 * 17 15 13 31 31 H 1.09004 * 110.61671 * 81.48046 * 18 17 15 32 32 H 1.09002 * 110.62265 * 204.47283 * 18 17 15 33 33 H 1.09002 * 109.46910 * 178.21752 * 22 20 19 34 34 H 1.08997 * 109.46918 * 298.21154 * 22 20 19 35 35 H 1.08994 * 109.46916 * 58.21980 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6147 -1.3127 6 1 4.0790 -0.0859 -0.5391 7 6 4.2305 -1.1933 -2.3577 8 7 3.5765 -1.8376 -3.2994 9 14 6.0922 -1.0619 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0701 -3.8551 12 1 6.5268 0.2033 -1.7913 13 16 2.1347 -0.8550 1.4812 14 8 3.5540 -0.7953 1.5163 15 6 1.4538 0.1423 2.8347 16 1 1.7977 1.1739 2.7602 17 6 -0.0932 0.0851 2.8249 18 6 -0.4239 -0.0192 4.3356 19 8 0.6301 -0.8587 4.8540 20 6 1.8454 -0.4597 4.1981 21 1 2.3623 0.2886 4.7990 22 6 2.7508 -1.6752 3.9894 23 1 -0.3633 -1.0111 0.1842 24 1 -0.3634 0.6650 0.7835 25 1 -0.3634 0.3459 -0.9677 26 1 1.7517 -1.7714 -1.2055 27 1 1.6054 -0.2617 -2.1370 28 1 4.0610 -2.2444 -4.0349 29 1 -0.5135 0.9950 2.3966 30 1 -0.4465 -0.7949 2.2873 31 1 -0.3959 0.9650 4.8034 32 1 -1.3965 -0.4883 4.4842 33 1 3.6551 -1.3686 3.4636 34 1 3.0193 -2.0987 4.9572 35 1 2.2233 -2.4240 3.3987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695882017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:35 Heat of formation + Delta-G solvation = -87.416182 kcal Electronic energy + Delta-G solvation = -16850.986001 eV Core-core repulsion = 14168.833588 eV Total energy + Delta-G solvation = -2682.152413 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32964 -35.09387 -34.66094 -32.56706 -31.98384 -31.12122 -27.40881 -25.92251 -23.44073 -22.00430 -21.38639 -20.44032 -16.83750 -16.71142 -16.24068 -15.74372 -15.41115 -14.84242 -14.51000 -14.15793 -13.64912 -13.20170 -12.74284 -12.56714 -12.35984 -12.24530 -11.73826 -11.53353 -11.30098 -11.06738 -10.94942 -10.93368 -10.84771 -10.64420 -10.52085 -10.35873 -9.76666 -9.57552 -9.12680 -8.74676 -8.32716 -7.47232 -5.98615 -3.99538 2.13695 3.31877 3.38464 3.43170 3.50782 3.86962 4.30939 4.52985 4.73849 4.86173 5.03139 5.11004 5.27846 5.39016 5.41266 5.57240 5.63887 5.64239 5.73214 5.82521 5.92085 5.96914 6.00453 6.05675 6.38649 6.39524 6.58588 6.78991 6.91031 7.55898 7.58075 8.03280 8.36186 9.10631 9.66912 11.12503 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036588 B = 0.007178 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.095030 B = 3899.735525 C = 4455.192843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.400 4.400 3 H 0.076 0.924 4 C 0.046 3.954 5 C -0.529 4.529 6 H 0.070 0.930 7 C 0.061 3.939 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.275 1.275 13 S 1.269 4.731 14 O -0.823 6.823 15 C -0.471 4.471 16 H 0.092 0.908 17 C -0.122 4.122 18 C 0.047 3.953 19 O -0.374 6.374 20 C 0.113 3.887 21 H 0.063 0.937 22 C -0.197 4.197 23 H 0.062 0.938 24 H 0.056 0.944 25 H 0.057 0.943 26 H 0.025 0.975 27 H 0.028 0.972 28 H 0.260 0.740 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.332 1.386 12.922 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.519 4.519 3 H 0.095 0.905 4 C 0.008 3.992 5 C -0.567 4.567 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.200 1.200 13 S 1.466 4.534 14 O -0.818 6.818 15 C -0.585 4.585 16 H 0.110 0.890 17 C -0.160 4.160 18 C -0.030 4.030 19 O -0.293 6.293 20 C 0.055 3.945 21 H 0.081 0.919 22 C -0.254 4.254 23 H 0.081 0.919 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.090 0.910 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.727 0.352 13.006 16.244 hybrid contribution 1.836 2.590 -0.493 3.213 sum -7.890 2.942 12.513 15.083 Atomic orbital electron populations 1.21865 0.93500 1.01683 1.02203 1.27384 1.00930 1.08890 1.14697 0.90515 1.18860 0.95990 0.94992 0.89344 1.21556 0.91816 1.34704 1.08622 0.91140 1.24943 0.98444 0.95131 0.95519 1.69964 1.35522 1.36188 1.12141 0.86571 0.85944 0.78780 0.76618 1.20464 1.21407 1.20027 1.70672 0.92719 1.05961 0.84054 1.93107 1.25677 1.79819 1.83216 1.29303 1.03867 1.12020 1.13285 0.88960 1.23064 0.92117 1.03636 0.97176 1.23564 0.91819 0.94809 0.92843 1.88843 1.17137 1.58836 1.64483 1.22172 0.86414 0.96078 0.89866 0.91893 1.22523 1.01057 0.97943 1.03916 0.91918 0.92551 0.92354 0.95683 0.95384 0.93036 0.89638 0.88878 0.92742 0.88784 0.87952 0.90993 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 7.76 37.16 0.29 -1.62 16 2 C -0.40 -7.73 2.80 -26.74 -0.07 -7.80 16 3 H 0.08 1.58 8.14 -51.92 -0.42 1.16 16 4 C 0.05 1.16 4.43 -27.89 -0.12 1.04 16 5 C -0.53 -15.45 8.11 -34.44 -0.28 -15.73 16 6 H 0.07 2.15 6.20 -52.48 -0.33 1.82 16 7 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 8 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 9 Si 0.89 23.27 29.54 -169.99 -5.02 18.25 16 10 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 13 S 1.27 22.25 9.77 -107.50 -1.05 21.20 16 14 O -0.82 -19.34 13.54 -35.23 -0.48 -19.82 16 15 C -0.47 -6.58 3.55 -25.20 -0.09 -6.67 16 16 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 17 C -0.12 -1.29 4.65 -24.73 -0.11 -1.40 16 18 C 0.05 0.48 7.72 38.21 0.29 0.77 16 19 O -0.37 -4.97 11.19 -35.23 -0.39 -5.36 16 20 C 0.11 1.57 4.05 -26.16 -0.11 1.47 16 21 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 22 C -0.20 -2.79 8.28 37.16 0.31 -2.48 16 23 H 0.06 0.74 7.61 -51.93 -0.39 0.35 16 24 H 0.06 0.64 4.71 -51.93 -0.24 0.39 16 25 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 26 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 29 H 0.09 0.79 6.59 -51.93 -0.34 0.45 16 30 H 0.09 0.85 6.48 -51.93 -0.34 0.52 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.71 5.78 -51.93 -0.30 1.41 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.95 7.14 -51.93 -0.37 0.58 16 LS Contribution 281.45 15.07 4.24 4.24 Total: -1.00 -34.93 281.45 -7.21 -42.14 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: -5.25 Total: -3.48 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 0.01 Total: -30.72 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.87 Total: -25.18 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Atomic # 16 Polarization: 22.25 SS G_CDS: -1.05 Total: 21.20 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -34.93 -7.21 -42.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.274 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds