Wall clock time and date at job start Mon Mar 30 2020 04:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46248 * 2 1 4 4 C 1.52990 * 109.47191 * 240.00129 * 2 1 3 5 5 C 1.50704 * 109.47273 * 174.99572 * 4 2 1 6 6 H 1.08003 * 119.99538 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00468 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99776 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00200 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.46844 * 90.00186 * 9 7 5 11 11 H 1.48497 * 109.47148 * 210.00113 * 9 7 5 12 12 H 1.48502 * 109.47311 * 330.00193 * 9 7 5 13 13 S 1.81399 * 109.47200 * 119.99587 * 2 1 3 14 14 O 1.42098 * 109.46970 * 182.96511 * 13 2 1 15 15 C 1.81393 * 103.00195 * 299.35864 * 13 2 1 16 16 H 1.09000 * 110.54573 * 301.41913 * 15 13 2 17 17 C 1.54809 * 110.49179 * 64.03573 * 15 13 2 18 18 C 1.54992 * 102.09495 * 139.55250 * 17 15 13 19 19 O 1.44378 * 103.49526 * 322.98169 * 18 17 15 20 20 C 1.43748 * 106.97315 * 40.05249 * 19 18 17 21 21 H 1.09007 * 109.87059 * 92.91594 * 20 19 18 22 22 C 1.53000 * 110.00281 * 213.99399 * 20 19 18 23 23 H 1.09002 * 109.46773 * 190.32240 * 1 2 3 24 24 H 1.09000 * 109.47381 * 310.32554 * 1 2 3 25 25 H 1.08999 * 109.47648 * 70.33040 * 1 2 3 26 26 H 1.09000 * 109.47308 * 294.99568 * 4 2 1 27 27 H 1.09001 * 109.47712 * 54.99875 * 4 2 1 28 28 H 0.97006 * 119.99846 * 179.97438 * 8 7 5 29 29 H 1.08996 * 110.90842 * 257.75591 * 17 15 13 30 30 H 1.09003 * 110.90405 * 21.32577 * 17 15 13 31 31 H 1.09004 * 110.61671 * 81.48046 * 18 17 15 32 32 H 1.09002 * 110.62265 * 204.47283 * 18 17 15 33 33 H 1.09002 * 109.46910 * 178.21752 * 22 20 19 34 34 H 1.08997 * 109.46918 * 298.21154 * 22 20 19 35 35 H 1.08994 * 109.46916 * 58.21980 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6147 -1.3127 6 1 4.0790 -0.0859 -0.5391 7 6 4.2305 -1.1933 -2.3577 8 7 3.5765 -1.8376 -3.2994 9 14 6.0922 -1.0619 -2.4360 10 1 6.7001 -2.2147 -1.7239 11 1 6.5298 -1.0701 -3.8551 12 1 6.5268 0.2033 -1.7913 13 16 2.1347 -0.8550 1.4812 14 8 3.5540 -0.7953 1.5163 15 6 1.4538 0.1423 2.8347 16 1 1.7977 1.1739 2.7602 17 6 -0.0932 0.0851 2.8249 18 6 -0.4239 -0.0192 4.3356 19 8 0.6301 -0.8587 4.8540 20 6 1.8454 -0.4597 4.1981 21 1 2.3623 0.2886 4.7990 22 6 2.7508 -1.6752 3.9894 23 1 -0.3633 -1.0111 0.1842 24 1 -0.3634 0.6650 0.7835 25 1 -0.3634 0.3459 -0.9677 26 1 1.7517 -1.7714 -1.2055 27 1 1.6054 -0.2617 -2.1370 28 1 4.0610 -2.2444 -4.0349 29 1 -0.5135 0.9950 2.3966 30 1 -0.4465 -0.7949 2.2873 31 1 -0.3959 0.9650 4.8034 32 1 -1.3965 -0.4883 4.4842 33 1 3.6551 -1.3686 3.4636 34 1 3.0193 -2.0987 4.9572 35 1 2.2233 -2.4240 3.3987 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695882017.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:35 Heat of formation + Delta-G solvation = -112.600901 kcal Electronic energy + Delta-G solvation = -16852.078092 eV Core-core repulsion = 14168.833588 eV Total energy + Delta-G solvation = -2683.244504 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.31782 -36.70066 -36.44325 -34.22010 -33.34938 -32.24336 -29.21847 -26.95819 -25.29286 -22.98562 -22.74022 -21.86967 -18.60086 -18.13605 -17.72905 -16.86565 -16.61373 -16.51744 -16.16245 -15.37426 -15.11016 -14.57889 -14.02187 -13.97973 -13.93426 -13.52718 -13.27294 -13.14984 -12.75623 -12.66562 -12.51045 -12.32615 -12.25483 -12.04665 -11.93955 -11.86209 -11.38239 -11.06153 -10.68670 -10.64678 -10.26831 -8.97886 -8.25572 -6.31742 0.73654 1.27800 1.30421 1.41096 1.92839 2.35807 2.89257 3.02303 3.12746 3.58126 3.80976 4.01490 4.13006 4.23773 4.30545 4.39836 4.45636 4.63180 4.65363 4.75530 4.88852 4.97695 5.01633 5.09591 5.17946 5.24070 5.24918 5.40033 5.49824 5.58059 5.78189 5.95803 6.18449 6.83942 7.36954 8.85425 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.036588 B = 0.007178 C = 0.006283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.095030 B = 3899.735525 C = 4455.192843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.400 4.400 3 H 0.055 0.945 4 C 0.047 3.953 5 C -0.544 4.544 6 H 0.050 0.950 7 C 0.011 3.989 8 N -0.923 5.923 9 Si 0.944 3.056 10 H -0.275 1.275 11 H -0.270 1.270 12 H -0.281 1.281 13 S 1.294 4.706 14 O -0.893 6.893 15 C -0.457 4.457 16 H 0.087 0.913 17 C -0.124 4.124 18 C 0.043 3.957 19 O -0.383 6.383 20 C 0.114 3.886 21 H 0.064 0.936 22 C -0.202 4.202 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.051 0.949 26 H 0.021 0.979 27 H 0.004 0.996 28 H 0.265 0.735 29 H 0.108 0.892 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 1.560 14.310 18.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.518 4.518 3 H 0.074 0.926 4 C 0.009 3.991 5 C -0.583 4.583 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.770 3.230 10 H -0.200 1.200 11 H -0.195 1.195 12 H -0.207 1.207 13 S 1.495 4.505 14 O -0.888 6.888 15 C -0.574 4.574 16 H 0.105 0.895 17 C -0.162 4.162 18 C -0.034 4.034 19 O -0.303 6.303 20 C 0.055 3.945 21 H 0.082 0.918 22 C -0.260 4.260 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.070 0.930 26 H 0.039 0.961 27 H 0.023 0.977 28 H 0.074 0.926 29 H 0.126 0.874 30 H 0.132 0.868 31 H 0.082 0.918 32 H 0.143 0.857 33 H 0.091 0.909 34 H 0.107 0.893 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.695 0.514 14.349 18.518 hybrid contribution 2.371 2.583 -0.802 3.596 sum -9.324 3.097 13.547 16.735 Atomic orbital electron populations 1.21960 0.89147 1.04563 1.03398 1.27330 1.04699 1.06742 1.13021 0.92626 1.18729 0.93694 0.95228 0.91425 1.21856 0.94231 1.34225 1.07972 0.93147 1.25670 1.02444 0.95146 0.95490 1.70027 1.36941 1.36840 1.12605 0.85773 0.81440 0.78371 0.77406 1.20041 1.19516 1.20686 1.69712 0.90612 1.06231 0.83942 1.93020 1.29217 1.81984 1.84599 1.29050 1.06592 1.10629 1.11145 0.89467 1.23274 0.88710 1.05820 0.98383 1.23841 0.92149 0.95369 0.92014 1.88840 1.17282 1.59613 1.64561 1.22102 0.87044 0.95702 0.89666 0.91844 1.22507 1.00181 0.98633 1.04651 0.89020 0.88867 0.92979 0.96105 0.97750 0.92608 0.87379 0.86824 0.91810 0.85703 0.90879 0.89346 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.41 7.76 71.98 0.56 -2.85 16 2 C -0.40 -15.37 2.80 30.59 0.09 -15.28 16 3 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 4 C 0.05 2.43 4.43 29.85 0.13 2.56 16 5 C -0.54 -32.86 8.11 25.60 0.21 -32.65 16 6 H 0.05 3.20 6.20 -2.91 -0.02 3.18 16 7 C 0.01 0.65 5.46 84.65 0.46 1.12 16 8 N -0.92 -56.71 13.29 21.45 0.28 -56.43 16 9 Si 0.94 48.55 29.54 68.60 2.03 50.58 16 10 H -0.27 -13.86 7.11 99.48 0.71 -13.16 16 11 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -14.62 7.11 99.48 0.71 -13.91 16 13 S 1.29 45.12 9.77 -56.49 -0.55 44.57 16 14 O -0.89 -43.58 13.54 -148.98 -2.02 -45.60 16 15 C -0.46 -11.79 3.55 31.58 0.11 -11.68 16 16 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 17 C -0.12 -2.06 4.65 31.89 0.15 -1.91 16 18 C 0.04 0.67 7.72 72.66 0.56 1.24 16 19 O -0.38 -8.91 11.19 -148.98 -1.67 -10.57 16 20 C 0.11 2.95 4.05 30.97 0.13 3.08 16 21 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 22 C -0.20 -5.61 8.28 71.98 0.60 -5.01 16 23 H 0.09 1.83 7.61 -2.39 -0.02 1.81 16 24 H 0.09 1.70 4.71 -2.39 -0.01 1.68 16 25 H 0.05 1.42 8.09 -2.39 -0.02 1.40 16 26 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.00 0.23 8.11 -2.39 -0.02 0.21 16 28 H 0.26 15.27 8.31 -92.70 -0.77 14.50 16 29 H 0.11 1.38 6.59 -2.39 -0.02 1.37 16 30 H 0.11 1.48 6.48 -2.39 -0.02 1.46 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.07 2.52 5.78 -2.39 -0.01 2.51 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 2.07 7.14 -2.39 -0.02 2.05 16 Total: -1.00 -78.57 281.45 2.13 -76.44 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: 1.07 Total: 2.40 kcal Atomic # 6 Polarization: -64.38 SS G_CDS: 2.99 Total: -61.39 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.28 Total: -56.43 kcal Atomic # 8 Polarization: -52.49 SS G_CDS: -3.69 Total: -56.17 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Atomic # 16 Polarization: 45.12 SS G_CDS: -0.55 Total: 44.57 kcal Total: -78.57 2.13 -76.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882017.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.158 kcal (2) G-P(sol) polarization free energy of solvation -78.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds