Wall clock time and date at job start Mon Mar 30 2020 04:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47098 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99775 * 2 1 3 5 5 C 1.50706 * 109.46925 * 185.00035 * 4 2 1 6 6 H 1.07999 * 120.00196 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99394 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99426 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47555 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.46814 * 210.00053 * 9 7 5 12 12 H 1.48496 * 109.47318 * 329.99545 * 9 7 5 13 13 S 1.81396 * 109.47203 * 240.00071 * 2 1 3 14 14 O 1.42098 * 109.47091 * 298.61098 * 13 2 1 15 15 C 1.81403 * 102.99939 * 54.99854 * 13 2 1 16 16 H 1.08994 * 110.43389 * 297.54192 * 15 13 2 17 17 C 1.54807 * 110.48798 * 60.23452 * 15 13 2 18 18 C 1.55001 * 102.09372 * 139.55659 * 17 15 13 19 19 O 1.44384 * 103.49015 * 322.97604 * 18 17 15 20 20 C 1.43743 * 106.97369 * 40.05832 * 19 18 17 21 21 H 1.09003 * 109.87874 * 92.91293 * 20 19 18 22 22 C 1.53000 * 110.00612 * 213.99492 * 20 19 18 23 23 H 1.08998 * 109.46896 * 59.99816 * 1 2 3 24 24 H 1.08993 * 109.46808 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47032 * 300.00041 * 1 2 3 26 26 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 27 27 H 1.09000 * 109.47312 * 305.00077 * 4 2 1 28 28 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 29 29 H 1.08999 * 110.90743 * 257.75334 * 17 15 13 30 30 H 1.09003 * 110.90767 * 21.36099 * 17 15 13 31 31 H 1.08993 * 110.61805 * 204.47548 * 18 17 15 32 32 H 1.08995 * 110.61483 * 81.47548 * 18 17 15 33 33 H 1.09001 * 109.47579 * 177.91120 * 22 20 19 34 34 H 1.09003 * 109.46763 * 297.90494 * 22 20 19 35 35 H 1.09001 * 109.47473 * 57.90329 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1934 2.3578 8 7 3.5766 -1.8377 3.2995 9 14 6.0921 -1.0609 2.4367 10 1 6.4699 0.1612 3.1910 11 1 6.6448 -2.2565 3.1226 12 1 6.6417 -0.9823 1.0594 13 16 2.1347 -0.8551 -1.4811 14 8 1.6877 -2.2038 -1.4650 15 6 1.3148 0.0375 -2.8309 16 1 0.2326 -0.0667 -2.7538 17 6 1.7207 1.5313 -2.8178 18 6 1.8943 1.8339 -4.3280 19 8 2.4727 0.6187 -4.8507 20 6 1.8103 -0.4765 -4.1966 21 1 0.9634 -0.8092 -4.7968 22 6 2.7897 -1.6341 -3.9925 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7517 -1.7715 1.2055 27 1 1.6055 -0.2617 2.1370 28 1 4.0610 -2.2444 4.0349 29 1 0.9302 2.1454 -2.3864 30 1 2.6590 1.6748 -2.2820 31 1 2.5711 2.6755 -4.4755 32 1 0.9286 2.0305 -4.7935 33 1 2.2889 -2.4448 -3.4633 34 1 3.1357 -1.9924 -4.9621 35 1 3.6422 -1.2899 -3.4071 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695882026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:40 Heat of formation + Delta-G solvation = -98.304799 kcal Electronic energy + Delta-G solvation = -16795.188668 eV Core-core repulsion = 14112.564089 eV Total energy + Delta-G solvation = -2682.624579 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.28787 -35.14617 -34.61844 -32.45238 -32.08984 -31.20683 -27.62754 -25.82687 -23.40671 -22.18114 -21.20025 -20.46980 -16.83319 -16.73957 -16.42971 -15.84324 -15.34467 -14.96075 -14.59887 -14.01502 -13.35502 -13.27115 -12.96232 -12.53994 -12.34507 -12.16065 -11.88696 -11.60808 -11.38460 -11.20128 -11.13020 -10.97889 -10.86676 -10.80760 -10.56743 -10.32487 -9.73598 -9.62742 -9.20611 -9.04123 -8.44677 -7.43155 -6.07897 -4.13939 2.12936 3.28687 3.32087 3.36656 3.38692 3.88432 4.28169 4.39744 4.70697 4.87496 5.08675 5.10665 5.29247 5.29418 5.41703 5.55171 5.64203 5.67845 5.69867 5.81030 5.86289 5.92843 6.03022 6.07873 6.34463 6.35264 6.55294 6.77594 6.92531 7.54209 7.60354 7.87909 8.23215 8.92361 9.52063 11.03151 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.007363 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.177547 B = 3801.939234 C = 4082.950052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.397 4.397 3 H 0.111 0.889 4 C 0.043 3.957 5 C -0.538 4.538 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.890 3.110 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.267 1.267 13 S 1.285 4.715 14 O -0.847 6.847 15 C -0.474 4.474 16 H 0.093 0.907 17 C -0.121 4.121 18 C 0.050 3.950 19 O -0.373 6.373 20 C 0.114 3.886 21 H 0.063 0.937 22 C -0.195 4.195 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.023 0.977 27 H 0.026 0.974 28 H 0.263 0.737 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 7.560 -12.885 15.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.516 4.516 3 H 0.129 0.871 4 C 0.005 3.995 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.192 1.192 13 S 1.482 4.518 14 O -0.843 6.843 15 C -0.587 4.587 16 H 0.112 0.888 17 C -0.159 4.159 18 C -0.027 4.027 19 O -0.292 6.292 20 C 0.056 3.944 21 H 0.081 0.919 22 C -0.253 4.253 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.238 6.649 -12.965 14.623 hybrid contribution -1.631 0.023 0.666 1.761 sum -2.868 6.673 -12.299 14.283 Atomic orbital electron populations 1.21867 0.95416 1.01667 1.01272 1.27495 0.99846 1.09668 1.14581 0.87114 1.18882 0.95996 0.95214 0.89374 1.21264 0.91531 1.35545 1.09270 0.91661 1.25033 0.98729 0.94752 0.95510 1.69965 1.35913 1.34926 1.11845 0.86610 0.85270 0.77697 0.78690 1.20472 1.21133 1.19154 1.71245 1.11866 0.84385 0.84295 1.93008 1.80442 1.26467 1.84354 1.29331 1.09844 1.06274 1.13270 0.88826 1.22781 1.03044 0.92560 0.97521 1.23509 0.98305 0.88366 0.92550 1.88846 1.61543 1.14507 1.64293 1.22158 0.94580 0.87886 0.89822 0.91864 1.22454 1.00570 0.98312 1.03993 0.93853 0.92876 0.92255 0.95880 0.95566 0.92729 0.90076 0.88987 0.88726 0.92700 0.88593 0.90794 0.90530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.96 37.16 0.33 -2.24 16 2 C -0.40 -7.74 2.52 -26.73 -0.07 -7.80 16 3 H 0.11 1.89 8.05 -51.92 -0.42 1.47 16 4 C 0.04 1.10 4.44 -27.88 -0.12 0.98 16 5 C -0.54 -14.19 8.53 -34.44 -0.29 -14.48 16 6 H 0.07 1.54 7.60 -52.49 -0.40 1.14 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 S 1.28 23.25 9.00 -107.50 -0.97 22.28 16 14 O -0.85 -19.64 16.12 -35.23 -0.57 -20.21 16 15 C -0.47 -6.73 2.89 -25.20 -0.07 -6.80 16 16 H 0.09 1.34 7.09 -51.93 -0.37 0.98 16 17 C -0.12 -1.37 6.31 -24.72 -0.16 -1.52 16 18 C 0.05 0.53 7.72 38.21 0.29 0.83 16 19 O -0.37 -5.07 11.19 -35.23 -0.39 -5.47 16 20 C 0.11 1.59 4.05 -26.15 -0.11 1.49 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 22 C -0.20 -2.78 8.30 37.16 0.31 -2.47 16 23 H 0.04 0.64 6.59 -51.93 -0.34 0.29 16 24 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 26 H 0.02 0.66 8.08 -51.93 -0.42 0.24 16 27 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.09 0.96 7.83 -51.93 -0.41 0.56 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.56 5.96 -51.93 -0.31 1.25 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.08 1.03 7.16 -51.93 -0.37 0.66 16 LS Contribution 291.42 15.07 4.39 4.39 Total: -1.00 -32.80 291.42 -7.35 -40.16 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.55 Total: -0.74 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 0.02 Total: -30.38 kcal Atomic # 7 Polarization: -26.32 SS G_CDS: 0.74 Total: -25.58 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.96 Total: -25.68 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 23.25 SS G_CDS: -0.97 Total: 22.28 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.80 -7.35 -40.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.149 kcal (2) G-P(sol) polarization free energy of solvation -32.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds