Wall clock time and date at job start Mon Mar 30 2020 04:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47098 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99775 * 2 1 3 5 5 C 1.50706 * 109.46925 * 185.00035 * 4 2 1 6 6 H 1.07999 * 120.00196 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99394 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00338 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99426 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47555 * 90.00165 * 9 7 5 11 11 H 1.48503 * 109.46814 * 210.00053 * 9 7 5 12 12 H 1.48496 * 109.47318 * 329.99545 * 9 7 5 13 13 S 1.81396 * 109.47203 * 240.00071 * 2 1 3 14 14 O 1.42098 * 109.47091 * 298.61098 * 13 2 1 15 15 C 1.81403 * 102.99939 * 54.99854 * 13 2 1 16 16 H 1.08994 * 110.43389 * 297.54192 * 15 13 2 17 17 C 1.54807 * 110.48798 * 60.23452 * 15 13 2 18 18 C 1.55001 * 102.09372 * 139.55659 * 17 15 13 19 19 O 1.44384 * 103.49015 * 322.97604 * 18 17 15 20 20 C 1.43743 * 106.97369 * 40.05832 * 19 18 17 21 21 H 1.09003 * 109.87874 * 92.91293 * 20 19 18 22 22 C 1.53000 * 110.00612 * 213.99492 * 20 19 18 23 23 H 1.08998 * 109.46896 * 59.99816 * 1 2 3 24 24 H 1.08993 * 109.46808 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47032 * 300.00041 * 1 2 3 26 26 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 27 27 H 1.09000 * 109.47312 * 305.00077 * 4 2 1 28 28 H 0.96996 * 119.99730 * 180.02562 * 8 7 5 29 29 H 1.08999 * 110.90743 * 257.75334 * 17 15 13 30 30 H 1.09003 * 110.90767 * 21.36099 * 17 15 13 31 31 H 1.08993 * 110.61805 * 204.47548 * 18 17 15 32 32 H 1.08995 * 110.61483 * 81.47548 * 18 17 15 33 33 H 1.09001 * 109.47579 * 177.91120 * 22 20 19 34 34 H 1.09003 * 109.46763 * 297.90494 * 22 20 19 35 35 H 1.09001 * 109.47473 * 57.90329 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5420 -0.6148 1.3127 6 1 4.0790 -0.0854 0.5395 7 6 4.2305 -1.1934 2.3578 8 7 3.5766 -1.8377 3.2995 9 14 6.0921 -1.0609 2.4367 10 1 6.4699 0.1612 3.1910 11 1 6.6448 -2.2565 3.1226 12 1 6.6417 -0.9823 1.0594 13 16 2.1347 -0.8551 -1.4811 14 8 1.6877 -2.2038 -1.4650 15 6 1.3148 0.0375 -2.8309 16 1 0.2326 -0.0667 -2.7538 17 6 1.7207 1.5313 -2.8178 18 6 1.8943 1.8339 -4.3280 19 8 2.4727 0.6187 -4.8507 20 6 1.8103 -0.4765 -4.1966 21 1 0.9634 -0.8092 -4.7968 22 6 2.7897 -1.6341 -3.9925 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.7517 -1.7715 1.2055 27 1 1.6055 -0.2617 2.1370 28 1 4.0610 -2.2444 4.0349 29 1 0.9302 2.1454 -2.3864 30 1 2.6590 1.6748 -2.2820 31 1 2.5711 2.6755 -4.4755 32 1 0.9286 2.0305 -4.7935 33 1 2.2889 -2.4448 -3.4633 34 1 3.1357 -1.9924 -4.9621 35 1 3.6422 -1.2899 -3.4071 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695882026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:39 Heat of formation + Delta-G solvation = -121.678316 kcal Electronic energy + Delta-G solvation = -16796.202220 eV Core-core repulsion = 14112.564089 eV Total energy + Delta-G solvation = -2683.638131 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.28804 -36.79017 -36.40959 -34.16272 -33.35295 -32.26145 -29.49277 -26.88614 -25.30726 -23.18626 -22.43217 -22.01892 -18.51004 -18.27250 -17.85048 -16.96265 -16.55037 -16.40188 -16.25026 -15.25154 -14.95399 -14.60544 -14.26127 -14.02872 -13.71825 -13.61036 -13.39284 -13.27747 -12.91227 -12.64967 -12.59612 -12.28581 -12.18595 -12.07951 -11.94084 -11.85306 -11.48948 -11.16728 -10.78105 -10.59527 -10.41839 -8.93957 -8.17329 -6.30953 0.69525 1.48720 1.50911 1.61740 1.89399 2.46456 2.87667 2.98890 3.18793 3.56014 3.82312 3.99861 4.08520 4.14320 4.26360 4.31126 4.38470 4.45461 4.63332 4.69635 4.81214 4.91603 4.98369 5.01285 5.07182 5.08061 5.21311 5.22004 5.42826 5.52496 5.79648 5.96508 6.15170 6.86899 7.40943 8.95628 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027849 B = 0.007363 C = 0.006856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.177547 B = 3801.939234 C = 4082.950052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.397 4.397 3 H 0.145 0.855 4 C 0.047 3.953 5 C -0.544 4.544 6 H 0.096 0.904 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.961 3.039 10 H -0.267 1.267 11 H -0.293 1.293 12 H -0.241 1.241 13 S 1.296 4.704 14 O -0.910 6.910 15 C -0.457 4.457 16 H 0.096 0.904 17 C -0.124 4.124 18 C 0.046 3.954 19 O -0.383 6.383 20 C 0.114 3.886 21 H 0.070 0.930 22 C -0.202 4.202 23 H 0.082 0.918 24 H 0.023 0.977 25 H 0.062 0.938 26 H -0.029 1.029 27 H -0.003 1.003 28 H 0.262 0.738 29 H 0.104 0.896 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.915 10.386 -15.075 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.515 4.515 3 H 0.163 0.837 4 C 0.009 3.991 5 C -0.582 4.582 6 H 0.114 0.886 7 C -0.202 4.202 8 N -0.581 5.581 9 Si 0.784 3.216 10 H -0.192 1.192 11 H -0.220 1.220 12 H -0.164 1.164 13 S 1.498 4.502 14 O -0.906 6.906 15 C -0.575 4.575 16 H 0.114 0.886 17 C -0.162 4.162 18 C -0.030 4.030 19 O -0.303 6.303 20 C 0.055 3.945 21 H 0.088 0.912 22 C -0.260 4.260 23 H 0.101 0.899 24 H 0.042 0.958 25 H 0.081 0.919 26 H -0.011 1.011 27 H 0.016 0.984 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.139 0.861 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.110 0.890 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.140 9.478 -15.135 17.858 hybrid contribution -2.061 -0.797 1.233 2.530 sum -2.201 8.681 -13.902 16.537 Atomic orbital electron populations 1.21865 0.94343 1.00459 1.03433 1.27430 1.00950 1.10669 1.12460 0.83750 1.18688 0.96339 0.92648 0.91412 1.21848 0.92085 1.34741 1.09537 0.88572 1.26135 1.04425 0.94434 0.95233 1.70147 1.38199 1.36761 1.12963 0.85499 0.78566 0.77555 0.79999 1.19244 1.21971 1.16365 1.70370 1.12403 0.83016 0.84450 1.92943 1.82025 1.30032 1.85556 1.29068 1.09529 1.07864 1.11037 0.88586 1.22982 1.04524 0.89986 0.98716 1.23773 0.99709 0.87889 0.91658 1.88842 1.61855 1.15229 1.64381 1.22126 0.94639 0.88118 0.89601 0.91249 1.22463 1.00722 0.97991 1.04800 0.89909 0.95799 0.91853 1.01067 0.98431 0.92935 0.87777 0.87711 0.86069 0.91402 0.91183 0.88961 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.00 8.96 71.98 0.65 -4.35 16 2 C -0.40 -15.18 2.52 30.59 0.08 -15.10 16 3 H 0.14 4.49 8.05 -2.39 -0.02 4.47 16 4 C 0.05 2.48 4.44 29.85 0.13 2.62 16 5 C -0.54 -28.79 8.53 25.60 0.22 -28.58 16 6 H 0.10 4.34 7.60 -2.91 -0.02 4.32 16 7 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 8 N -0.94 -57.92 13.29 21.45 0.28 -57.64 16 9 Si 0.96 41.84 29.54 68.60 2.03 43.87 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.24 -9.38 7.11 99.48 0.71 -8.68 16 13 S 1.30 46.07 9.00 -56.49 -0.51 45.56 16 14 O -0.91 -43.78 16.12 -148.98 -2.40 -46.18 16 15 C -0.46 -11.71 2.89 31.59 0.09 -11.62 16 16 H 0.10 2.47 7.09 -2.39 -0.02 2.45 16 17 C -0.12 -2.22 6.31 31.90 0.20 -2.02 16 18 C 0.05 0.76 7.72 72.67 0.56 1.33 16 19 O -0.38 -9.02 11.19 -148.98 -1.67 -10.69 16 20 C 0.11 2.90 4.05 30.97 0.13 3.03 16 21 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 22 C -0.20 -5.52 8.30 71.98 0.60 -4.92 16 23 H 0.08 2.21 6.59 -2.39 -0.02 2.19 16 24 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 26 H -0.03 -1.81 8.08 -2.39 -0.02 -1.83 16 27 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 1.66 7.83 -2.39 -0.02 1.64 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 2.32 5.96 -2.39 -0.01 2.31 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.08 2.10 7.16 -2.39 -0.02 2.08 16 Total: -1.00 -75.29 291.42 1.90 -73.39 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.05 Total: 11.11 kcal Atomic # 6 Polarization: -62.52 SS G_CDS: 3.11 Total: -59.41 kcal Atomic # 7 Polarization: -57.92 SS G_CDS: 0.28 Total: -57.64 kcal Atomic # 8 Polarization: -52.80 SS G_CDS: -4.07 Total: -56.87 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.87 kcal Atomic # 16 Polarization: 46.07 SS G_CDS: -0.51 Total: 45.56 kcal Total: -75.29 1.90 -73.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.290 kcal (2) G-P(sol) polarization free energy of solvation -75.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds