Wall clock time and date at job start Mon Mar 30 2020 04:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47224 * 2 1 4 4 C 1.52997 * 109.47666 * 239.99495 * 2 1 3 5 5 C 1.50694 * 109.47460 * 175.00013 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 S 1.81403 * 109.47080 * 119.99488 * 2 1 3 14 14 O 1.42097 * 109.47334 * 188.61349 * 13 2 1 15 15 C 1.81401 * 102.99982 * 305.00304 * 13 2 1 16 16 C 1.53005 * 109.46980 * 179.97438 * 15 13 2 17 17 H 1.08998 * 109.82230 * 305.56477 * 16 15 13 18 18 C 1.54385 * 109.82818 * 184.58835 * 16 15 13 19 19 C 1.55296 * 102.25145 * 219.13068 * 18 16 15 20 20 C 1.54950 * 100.94601 * 34.13198 * 19 18 16 21 21 O 1.43232 * 109.83044 * 66.45586 * 16 15 13 22 22 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47274 * 300.00605 * 1 2 3 24 24 H 1.09002 * 109.46740 * 60.00621 * 1 2 3 25 25 H 1.09005 * 109.46800 * 55.00484 * 4 2 1 26 26 H 1.08998 * 109.47382 * 295.00283 * 4 2 1 27 27 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47435 * 299.99792 * 15 13 2 29 29 H 1.09002 * 109.46986 * 59.99714 * 15 13 2 30 30 H 1.09003 * 110.84659 * 337.32008 * 18 16 15 31 31 H 1.08997 * 110.84488 * 100.94062 * 18 16 15 32 32 H 1.09004 * 111.12800 * 276.21803 * 19 18 16 33 33 H 1.09003 * 111.16606 * 152.06863 * 19 18 16 34 34 H 1.08992 * 110.31430 * 204.64268 * 20 19 18 35 35 H 1.08996 * 110.30963 * 82.47033 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3125 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3581 8 7 3.5766 -1.8371 -3.2997 9 14 6.0921 -1.0603 -2.4371 10 1 6.4699 0.1623 -3.1904 11 1 6.6417 -0.9827 -1.0597 12 1 6.6447 -2.2554 -3.1239 13 16 2.1346 -0.8550 1.4812 14 8 3.5414 -0.6838 1.5859 15 6 1.3147 0.0376 2.8309 16 6 1.7278 -0.5735 4.1714 17 1 1.5260 -1.6447 4.1671 18 6 0.9472 0.1037 5.3184 19 6 2.0265 0.2174 6.4293 20 6 3.2991 0.4605 5.5794 21 8 3.1225 -0.3426 4.4016 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6055 -0.2618 -2.1369 26 1 1.7518 -1.7716 -1.2055 27 1 4.0609 -2.2433 -4.0355 28 1 1.6084 1.0869 2.8037 29 1 0.2338 -0.0403 2.7141 30 1 0.5945 1.0903 5.0179 31 1 0.1178 -0.5229 5.6460 32 1 2.1047 -0.7097 6.9973 33 1 1.8262 1.0628 7.0875 34 1 4.1860 0.1405 6.1260 35 1 3.3790 1.5138 5.3106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695882569.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:21 Heat of formation + Delta-G solvation = -97.879343 kcal Electronic energy + Delta-G solvation = -16364.671313 eV Core-core repulsion = 13682.065183 eV Total energy + Delta-G solvation = -2682.606130 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.35311 -34.63017 -34.44622 -32.29889 -31.95919 -31.37055 -27.48843 -25.95598 -23.21675 -21.89673 -21.37490 -20.31929 -16.97479 -16.38953 -16.30468 -15.99471 -15.02644 -14.64384 -14.33949 -14.11227 -13.63086 -13.32669 -12.89141 -12.63845 -12.11218 -11.88849 -11.77317 -11.57877 -11.50876 -11.25835 -11.16528 -10.94819 -10.78938 -10.57560 -10.48568 -10.33009 -9.56145 -9.45722 -9.06160 -8.64223 -8.25464 -7.29130 -5.93046 -3.93767 2.35013 3.41950 3.47175 3.55826 3.60847 3.87720 4.40594 4.59293 4.65653 4.78268 4.83671 5.08934 5.20032 5.42694 5.45958 5.53184 5.59071 5.63412 5.66896 5.73794 5.84799 5.86441 5.96168 6.01744 6.21035 6.48002 6.63668 6.88202 7.12163 7.63879 7.65737 8.09422 8.43792 9.17569 9.72884 11.18003 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031932 B = 0.006430 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.657702 B = 4353.782812 C = 5071.698189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.401 4.401 3 H 0.074 0.926 4 C 0.047 3.953 5 C -0.529 4.529 6 H 0.071 0.929 7 C 0.061 3.939 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.269 1.269 12 H -0.286 1.286 13 S 1.254 4.746 14 O -0.810 6.810 15 C -0.488 4.488 16 C 0.101 3.899 17 H 0.088 0.912 18 C -0.147 4.147 19 C -0.158 4.158 20 C 0.048 3.952 21 O -0.363 6.363 22 H 0.064 0.936 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.260 0.740 28 H 0.080 0.920 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.807 1.346 16.917 19.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.519 4.519 3 H 0.093 0.907 4 C 0.009 3.991 5 C -0.567 4.567 6 H 0.089 0.911 7 C -0.140 4.140 8 N -0.539 5.539 9 Si 0.716 3.284 10 H -0.209 1.209 11 H -0.193 1.193 12 H -0.212 1.212 13 S 1.450 4.550 14 O -0.805 6.805 15 C -0.621 4.621 16 C 0.043 3.957 17 H 0.106 0.894 18 C -0.186 4.186 19 C -0.196 4.196 20 C -0.029 4.029 21 O -0.282 6.282 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.135 0.865 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.971 0.436 16.713 18.973 hybrid contribution 1.357 2.571 -0.136 2.911 sum -7.614 3.008 16.577 18.488 Atomic orbital electron populations 1.21531 0.93663 1.01984 1.01025 1.27453 1.00599 1.08865 1.14991 0.90725 1.18832 0.95897 0.95000 0.89344 1.21588 0.91933 1.34530 1.08683 0.91100 1.24939 0.98401 0.95106 0.95537 1.69966 1.35512 1.36289 1.12108 0.86628 0.86062 0.77296 0.78458 1.20892 1.19343 1.21200 1.70365 0.90905 1.09240 0.84486 1.93162 1.24483 1.80328 1.82510 1.28447 1.10509 1.10690 1.12483 1.22268 0.81638 0.99204 0.92607 0.89425 1.23211 0.98574 1.01931 0.94846 1.23288 0.95313 1.02768 0.98182 1.23348 0.97941 0.95557 0.86035 1.88673 1.23148 1.71415 1.44954 0.91736 0.93719 0.92599 0.95562 0.95557 0.93103 0.90149 0.86499 0.90558 0.89881 0.90327 0.90264 0.89891 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 8.94 37.16 0.33 -1.51 16 2 C -0.40 -8.08 2.84 -26.73 -0.08 -8.16 16 3 H 0.07 1.63 8.14 -51.92 -0.42 1.21 16 4 C 0.05 1.22 4.45 -27.89 -0.12 1.09 16 5 C -0.53 -15.82 8.24 -34.44 -0.28 -16.11 16 6 H 0.07 2.23 6.23 -52.49 -0.33 1.91 16 7 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 8 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 9 Si 0.89 23.60 29.54 -169.99 -5.02 18.58 16 10 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.27 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 13 S 1.25 23.22 12.39 -107.50 -1.33 21.88 16 14 O -0.81 -20.81 15.38 -40.80 -0.63 -21.44 16 15 C -0.49 -6.85 4.88 37.16 0.18 -6.67 16 16 C 0.10 1.34 3.51 -26.00 -0.09 1.25 16 17 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 18 C -0.15 -1.44 6.54 -24.79 -0.16 -1.60 16 19 C -0.16 -1.47 7.15 -24.48 -0.18 -1.64 16 20 C 0.05 0.61 7.78 38.19 0.30 0.90 16 21 O -0.36 -6.17 10.21 -40.80 -0.42 -6.58 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.53 6.51 -51.93 -0.34 0.19 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.08 1.25 8.14 -51.92 -0.42 0.83 16 29 H 0.12 1.21 6.90 -51.92 -0.36 0.86 16 30 H 0.08 0.74 7.85 -51.93 -0.41 0.33 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -37.60 295.42 -8.05 -45.64 By element: Atomic # 1 Polarization: 0.61 SS G_CDS: -5.64 Total: -5.03 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: -0.20 Total: -30.70 kcal Atomic # 7 Polarization: -27.55 SS G_CDS: 0.74 Total: -26.81 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -1.04 Total: -28.02 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -5.02 Total: 18.58 kcal Atomic # 16 Polarization: 23.22 SS G_CDS: -1.33 Total: 21.88 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -37.60 -8.05 -45.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882569.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.237 kcal (2) G-P(sol) polarization free energy of solvation -37.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds