Wall clock time and date at job start Mon Mar 30 2020 04:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.47224 * 2 1 4 4 C 1.52997 * 109.47666 * 239.99495 * 2 1 3 5 5 C 1.50694 * 109.47460 * 175.00013 * 4 2 1 6 6 H 1.08002 * 120.00179 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00472 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99350 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 179.97438 * 7 5 4 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 S 1.81403 * 109.47080 * 119.99488 * 2 1 3 14 14 O 1.42097 * 109.47334 * 188.61349 * 13 2 1 15 15 C 1.81401 * 102.99982 * 305.00304 * 13 2 1 16 16 C 1.53005 * 109.46980 * 179.97438 * 15 13 2 17 17 H 1.08998 * 109.82230 * 305.56477 * 16 15 13 18 18 C 1.54385 * 109.82818 * 184.58835 * 16 15 13 19 19 C 1.55296 * 102.25145 * 219.13068 * 18 16 15 20 20 C 1.54950 * 100.94601 * 34.13198 * 19 18 16 21 21 O 1.43232 * 109.83044 * 66.45586 * 16 15 13 22 22 H 1.09005 * 109.46761 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47274 * 300.00605 * 1 2 3 24 24 H 1.09002 * 109.46740 * 60.00621 * 1 2 3 25 25 H 1.09005 * 109.46800 * 55.00484 * 4 2 1 26 26 H 1.08998 * 109.47382 * 295.00283 * 4 2 1 27 27 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 28 28 H 1.08999 * 109.47435 * 299.99792 * 15 13 2 29 29 H 1.09002 * 109.46986 * 59.99714 * 15 13 2 30 30 H 1.09003 * 110.84659 * 337.32008 * 18 16 15 31 31 H 1.08997 * 110.84488 * 100.94062 * 18 16 15 32 32 H 1.09004 * 111.12800 * 276.21803 * 19 18 16 33 33 H 1.09003 * 111.16606 * 152.06863 * 19 18 16 34 34 H 1.08992 * 110.31430 * 204.64268 * 20 19 18 35 35 H 1.08996 * 110.30963 * 82.47033 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5419 -0.6150 -1.3125 6 1 4.0790 -0.0854 -0.5395 7 6 4.2305 -1.1927 -2.3581 8 7 3.5766 -1.8371 -3.2997 9 14 6.0921 -1.0603 -2.4371 10 1 6.4699 0.1623 -3.1904 11 1 6.6417 -0.9827 -1.0597 12 1 6.6447 -2.2554 -3.1239 13 16 2.1346 -0.8550 1.4812 14 8 3.5414 -0.6838 1.5859 15 6 1.3147 0.0376 2.8309 16 6 1.7278 -0.5735 4.1714 17 1 1.5260 -1.6447 4.1671 18 6 0.9472 0.1037 5.3184 19 6 2.0265 0.2174 6.4293 20 6 3.2991 0.4605 5.5794 21 8 3.1225 -0.3426 4.4016 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.6055 -0.2618 -2.1369 26 1 1.7518 -1.7716 -1.2055 27 1 4.0609 -2.2433 -4.0355 28 1 1.6084 1.0869 2.8037 29 1 0.2338 -0.0403 2.7141 30 1 0.5945 1.0903 5.0179 31 1 0.1178 -0.5229 5.6460 32 1 2.1047 -0.7097 6.9973 33 1 1.8262 1.0628 7.0875 34 1 4.1860 0.1405 6.1260 35 1 3.3790 1.5138 5.3106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695882569.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:21 Heat of formation + Delta-G solvation = -125.524588 kcal Electronic energy + Delta-G solvation = -16365.870101 eV Core-core repulsion = 13682.065183 eV Total energy + Delta-G solvation = -2683.804917 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.33707 -36.41695 -36.29705 -34.04067 -33.22804 -32.40298 -29.34090 -27.04152 -25.17025 -22.83265 -22.58072 -21.74577 -18.56531 -18.05298 -17.81357 -17.04561 -16.69326 -16.42075 -15.82647 -15.35861 -14.92290 -14.66366 -14.11108 -14.03109 -13.88280 -13.43234 -13.30758 -13.01083 -12.69482 -12.61905 -12.52207 -12.46411 -12.23637 -12.20991 -11.96965 -11.67812 -11.49163 -11.12560 -10.66757 -10.53424 -10.22678 -8.87937 -8.24936 -6.31089 0.88253 1.27209 1.29235 1.44712 2.11334 2.37247 2.93432 3.07207 3.31742 3.60605 3.82473 3.99215 4.16837 4.18055 4.31246 4.42543 4.48224 4.65022 4.68461 4.76258 4.81426 4.91808 5.02668 5.07737 5.12540 5.20180 5.32084 5.39950 5.49905 5.60583 5.79570 6.14964 6.20906 6.84787 7.37737 8.85926 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031932 B = 0.006430 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.657702 B = 4353.782812 C = 5071.698189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.398 4.398 3 H 0.047 0.953 4 C 0.049 3.951 5 C -0.547 4.547 6 H 0.045 0.955 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.266 1.266 13 S 1.276 4.724 14 O -0.895 6.895 15 C -0.463 4.463 16 C 0.082 3.918 17 H 0.108 0.892 18 C -0.138 4.138 19 C -0.146 4.146 20 C 0.033 3.967 21 O -0.412 6.412 22 H 0.091 0.909 23 H 0.084 0.916 24 H 0.050 0.950 25 H 0.003 0.997 26 H 0.026 0.974 27 H 0.266 0.734 28 H 0.065 0.935 29 H 0.168 0.832 30 H 0.079 0.921 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 1.278 18.817 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.516 4.516 3 H 0.066 0.934 4 C 0.011 3.989 5 C -0.585 4.585 6 H 0.063 0.937 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.191 1.191 13 S 1.476 4.524 14 O -0.890 6.890 15 C -0.601 4.601 16 C 0.024 3.976 17 H 0.125 0.875 18 C -0.176 4.176 19 C -0.184 4.184 20 C -0.044 4.044 21 O -0.332 6.332 22 H 0.110 0.890 23 H 0.103 0.897 24 H 0.069 0.931 25 H 0.021 0.979 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.186 0.814 30 H 0.098 0.902 31 H 0.135 0.865 32 H 0.110 0.890 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.225 0.354 18.560 21.693 hybrid contribution 1.996 2.645 -0.621 3.371 sum -9.229 3.000 17.939 20.395 Atomic orbital electron populations 1.21594 0.89050 1.04443 1.02833 1.27367 1.04519 1.06336 1.13380 0.93417 1.18710 0.93489 0.95419 0.91297 1.21840 0.94407 1.34260 1.08021 0.93652 1.25641 1.02362 0.95059 0.95453 1.70019 1.36916 1.36753 1.12497 0.85815 0.81515 0.78436 0.77544 1.19665 1.21277 1.19073 1.69144 0.88674 1.09787 0.84768 1.93052 1.28903 1.82797 1.84256 1.28250 1.12548 1.08839 1.10449 1.22690 0.80952 1.00862 0.93108 0.87474 1.23218 0.98973 1.02375 0.93069 1.23276 0.92865 1.04343 0.97905 1.23579 1.00334 0.94636 0.85821 1.88646 1.25648 1.72118 1.46814 0.88981 0.89705 0.93086 0.97884 0.95588 0.92551 0.91569 0.81391 0.90184 0.86504 0.89045 0.88050 0.89588 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.28 8.94 71.98 0.64 -2.63 16 2 C -0.40 -16.12 2.84 30.59 0.09 -16.03 16 3 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.05 2.58 4.45 29.85 0.13 2.71 16 5 C -0.55 -34.02 8.24 25.60 0.21 -33.81 16 6 H 0.05 3.02 6.23 -2.91 -0.02 3.00 16 7 C 0.01 0.83 5.46 84.66 0.46 1.29 16 8 N -0.92 -57.25 13.29 21.45 0.28 -56.96 16 9 Si 0.94 49.62 29.54 68.60 2.03 51.65 16 10 H -0.27 -13.69 7.11 99.48 0.71 -12.98 16 11 H -0.29 -15.89 7.11 99.48 0.71 -15.18 16 12 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 13 S 1.28 47.26 12.39 -56.49 -0.70 46.56 16 14 O -0.89 -48.24 15.38 -143.65 -2.21 -50.45 16 15 C -0.46 -11.77 4.88 71.98 0.35 -11.42 16 16 C 0.08 1.96 3.51 31.07 0.11 2.07 16 17 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 18 C -0.14 -2.08 6.54 31.85 0.21 -1.87 16 19 C -0.15 -2.23 7.15 32.05 0.23 -2.00 16 20 C 0.03 0.80 7.78 72.65 0.57 1.36 16 21 O -0.41 -13.94 10.21 -143.65 -1.47 -15.41 16 22 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 23 H 0.08 1.62 6.51 -2.39 -0.02 1.60 16 24 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.00 0.16 8.14 -2.38 -0.02 0.14 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.17 2.53 6.90 -2.39 -0.02 2.51 16 30 H 0.08 1.17 7.85 -2.39 -0.02 1.15 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -87.19 295.42 1.98 -85.21 By element: Atomic # 1 Polarization: -1.31 SS G_CDS: 1.05 Total: -0.26 kcal Atomic # 6 Polarization: -63.34 SS G_CDS: 3.00 Total: -60.34 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.28 Total: -56.96 kcal Atomic # 8 Polarization: -62.18 SS G_CDS: -3.68 Total: -65.86 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.03 Total: 51.65 kcal Atomic # 16 Polarization: 47.26 SS G_CDS: -0.70 Total: 46.56 kcal Total: -87.19 1.98 -85.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695882569.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.315 kcal (2) G-P(sol) polarization free energy of solvation -87.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds