Wall clock time and date at job start Mon Mar 30 2020 03:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47329 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47088 * 180.02562 * 11 10 9 13 13 S 1.81404 * 109.46893 * 179.97438 * 12 11 10 14 14 O 1.42097 * 109.47053 * 63.61512 * 13 12 11 15 15 C 1.81403 * 102.99907 * 180.02562 * 13 12 11 16 16 H 1.08997 * 110.80543 * 298.63471 * 15 13 12 17 17 C 1.54806 * 110.90702 * 174.99687 * 15 13 12 18 18 C 1.54102 * 104.18951 * 220.91997 * 17 15 13 19 19 O 1.43745 * 107.29196 * 357.97680 * 18 17 15 20 20 C 1.44375 * 106.97683 * 26.51060 * 19 18 17 21 21 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 23 23 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 24 24 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 25 25 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 26 26 H 1.09000 * 109.47250 * 300.00036 * 11 10 9 27 27 H 1.08998 * 109.47060 * 60.00002 * 11 10 9 28 28 H 1.09000 * 109.47535 * 299.99809 * 12 11 10 29 29 H 1.08998 * 109.47172 * 60.00066 * 12 11 10 30 30 H 1.08997 * 110.49164 * 339.60112 * 17 15 13 31 31 H 1.08999 * 110.48203 * 102.25106 * 17 15 13 32 32 H 1.08999 * 109.87326 * 117.39542 * 18 17 15 33 33 H 1.09003 * 109.88050 * 238.55045 * 18 17 15 34 34 H 1.09008 * 110.61733 * 201.44048 * 20 19 18 35 35 H 1.08990 * 110.62135 * 78.44337 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 6 6.0616 -4.0789 -0.0015 13 16 7.8757 -4.0788 -0.0022 14 8 8.3498 -3.4837 1.1979 15 6 8.2838 -5.8463 -0.0035 16 1 7.8955 -6.3340 0.8906 17 6 9.8118 -6.0604 -0.1304 18 6 9.9473 -7.2490 -1.1017 19 8 8.6178 -7.6812 -1.4362 20 6 7.7518 -6.5358 -1.2858 21 1 -0.4849 0.8401 -0.0004 22 1 3.8746 -0.6800 -0.8911 23 1 3.8753 -0.6803 0.8889 24 1 3.6586 -3.1501 0.8892 25 1 3.6580 -3.1504 -0.8907 26 1 5.9150 -2.1226 -0.8909 27 1 5.9149 -2.1225 0.8890 28 1 5.6984 -4.5931 0.8883 29 1 5.6984 -4.5924 -0.8916 30 1 10.2883 -5.1723 -0.5453 31 1 10.2439 -6.3088 0.8390 32 1 10.4721 -6.9329 -2.0032 33 1 10.4909 -8.0616 -0.6196 34 1 6.7174 -6.8519 -1.1506 35 1 7.8420 -5.8710 -2.1447 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703058725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:10 Heat of formation + Delta-G solvation = -103.710498 kcal Electronic energy + Delta-G solvation = -15508.958735 eV Core-core repulsion = 12826.099747 eV Total energy + Delta-G solvation = -2682.858988 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.45637 -35.83922 -35.34926 -32.62006 -32.49701 -30.14709 -29.44398 -25.54943 -23.29282 -22.38351 -21.36144 -20.13926 -17.76943 -17.06648 -16.74752 -16.49173 -15.63655 -15.20335 -14.86253 -14.37019 -14.16872 -13.97122 -13.47876 -12.94113 -12.75697 -12.37424 -12.24036 -12.00301 -11.81776 -11.62075 -11.34003 -11.18236 -10.91470 -10.65963 -10.34012 -10.05553 -9.90330 -9.72575 -9.44349 -9.16996 -8.53206 -8.38668 -6.03881 -4.01899 1.29018 2.41907 3.31889 3.38969 3.42617 3.46026 3.70004 4.11115 4.43305 4.46042 4.59898 4.78508 4.87140 4.99777 5.08228 5.23518 5.30415 5.34265 5.38035 5.47168 5.60062 5.63409 5.83283 6.01152 6.24024 6.45771 6.54486 6.66270 6.90118 7.30906 7.43771 7.80406 8.54578 9.00945 9.58852 11.09664 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.050782 B = 0.003875 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.246033 B = 7224.893448 C = 7587.660389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.264 1.264 6 H -0.288 1.288 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.017 4.017 10 C -0.097 4.097 11 C -0.104 4.104 12 C -0.439 4.439 13 S 1.246 4.754 14 O -0.843 6.843 15 C -0.459 4.459 16 H 0.101 0.899 17 C -0.123 4.123 18 C 0.050 3.950 19 O -0.375 6.375 20 C 0.079 3.921 21 H 0.263 0.737 22 H 0.017 0.983 23 H 0.010 0.990 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.693 -12.093 -5.630 24.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.214 1.214 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.054 4.054 10 C -0.136 4.136 11 C -0.143 4.143 12 C -0.577 4.577 13 S 1.445 4.555 14 O -0.838 6.838 15 C -0.575 4.575 16 H 0.120 0.880 17 C -0.162 4.162 18 C -0.028 4.028 19 O -0.294 6.294 20 C 0.001 3.999 21 H 0.072 0.928 22 H 0.036 0.964 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.105 0.895 29 H 0.136 0.864 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.117 0.883 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 21.134 -11.437 -5.659 24.687 hybrid contribution -0.547 -0.006 2.107 2.177 sum 20.587 -11.443 -3.551 23.820 Atomic orbital electron populations 1.69921 1.06327 1.26880 1.51285 1.25054 0.94748 0.99247 0.94572 0.86761 0.80365 0.83535 0.78537 1.20353 1.18907 1.21372 1.21165 0.89601 0.94432 1.50706 0.91118 1.19613 0.97117 0.92417 0.96302 1.21455 0.91004 0.99878 1.01225 1.21347 0.99085 0.91550 1.02301 1.27661 1.17810 1.04558 1.07701 1.70495 0.88237 0.84350 1.12392 1.93133 1.74016 1.65533 1.51148 1.29321 1.01806 1.21730 1.04606 0.88034 1.22581 0.92906 0.99418 1.01285 1.23163 0.85435 0.96615 0.97546 1.88875 1.17874 1.33057 1.89582 1.23243 0.95337 0.87551 0.93732 0.92758 0.96430 0.97144 0.93000 0.92412 0.91169 0.91967 0.89517 0.86366 0.89976 0.90182 0.91668 0.89864 0.88282 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.21 13.96 55.43 0.77 -27.44 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.52 -15.04 9.66 -34.44 -0.33 -15.37 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C -0.02 -0.41 4.04 -27.88 -0.11 -0.52 16 10 C -0.10 -1.87 5.15 -26.73 -0.14 -2.01 16 11 C -0.10 -1.58 5.22 -26.73 -0.14 -1.72 16 12 C -0.44 -5.03 5.71 37.16 0.21 -4.82 16 13 S 1.25 12.21 12.51 -107.50 -1.34 10.86 16 14 O -0.84 -13.91 18.14 -35.23 -0.64 -14.55 16 15 C -0.46 -3.96 3.66 -24.72 -0.09 -4.05 16 16 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 17 C -0.12 -0.93 6.62 -25.20 -0.17 -1.10 16 18 C 0.05 0.36 7.70 37.73 0.29 0.65 16 19 O -0.38 -3.63 11.52 -35.23 -0.41 -4.04 16 20 C 0.08 0.59 6.81 38.22 0.26 0.85 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 23 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.09 1.09 8.14 -51.92 -0.42 0.67 16 29 H 0.12 1.01 7.99 -51.92 -0.41 0.59 16 30 H 0.08 0.47 7.82 -51.93 -0.41 0.07 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.08 0.36 8.04 -51.93 -0.42 -0.05 16 LS Contribution 300.72 15.07 4.53 4.53 Total: -1.00 -37.07 300.72 -7.89 -44.95 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -5.82 Total: -5.31 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -0.31 Total: -26.28 kcal Atomic # 7 Polarization: -28.21 SS G_CDS: 0.77 Total: -27.44 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -1.04 Total: -18.59 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Atomic # 16 Polarization: 12.21 SS G_CDS: -1.34 Total: 10.86 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -37.07 -7.89 -44.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703058725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.756 kcal (2) G-P(sol) polarization free energy of solvation -37.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds