Wall clock time and date at job start Mon Mar 30 2020 03:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99726 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99675 * 179.97438 * 7 2 1 10 10 C 1.53007 * 109.46894 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47329 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47088 * 180.02562 * 11 10 9 13 13 S 1.81404 * 109.46893 * 179.97438 * 12 11 10 14 14 O 1.42097 * 109.47053 * 63.61512 * 13 12 11 15 15 C 1.81403 * 102.99907 * 180.02562 * 13 12 11 16 16 H 1.08997 * 110.80543 * 298.63471 * 15 13 12 17 17 C 1.54806 * 110.90702 * 174.99687 * 15 13 12 18 18 C 1.54102 * 104.18951 * 220.91997 * 17 15 13 19 19 O 1.43745 * 107.29196 * 357.97680 * 18 17 15 20 20 C 1.44375 * 106.97683 * 26.51060 * 19 18 17 21 21 H 0.96998 * 119.99640 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47439 * 299.99276 * 9 7 2 23 23 H 1.09007 * 109.47443 * 60.00458 * 9 7 2 24 24 H 1.09000 * 109.46984 * 300.00380 * 10 9 7 25 25 H 1.08999 * 109.46611 * 59.99865 * 10 9 7 26 26 H 1.09000 * 109.47250 * 300.00036 * 11 10 9 27 27 H 1.08998 * 109.47060 * 60.00002 * 11 10 9 28 28 H 1.09000 * 109.47535 * 299.99809 * 12 11 10 29 29 H 1.08998 * 109.47172 * 60.00066 * 12 11 10 30 30 H 1.08997 * 110.49164 * 339.60112 * 17 15 13 31 31 H 1.08999 * 110.48203 * 102.25106 * 17 15 13 32 32 H 1.08999 * 109.87326 * 117.39542 * 18 17 15 33 33 H 1.09003 * 109.88050 * 238.55045 * 18 17 15 34 34 H 1.09008 * 110.61733 * 201.44048 * 20 19 18 35 35 H 1.08990 * 110.62135 * 78.44337 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0010 11 6 5.5516 -2.6364 -0.0009 12 6 6.0616 -4.0789 -0.0015 13 16 7.8757 -4.0788 -0.0022 14 8 8.3498 -3.4837 1.1979 15 6 8.2838 -5.8463 -0.0035 16 1 7.8955 -6.3340 0.8906 17 6 9.8118 -6.0604 -0.1304 18 6 9.9473 -7.2490 -1.1017 19 8 8.6178 -7.6812 -1.4362 20 6 7.7518 -6.5358 -1.2858 21 1 -0.4849 0.8401 -0.0004 22 1 3.8746 -0.6800 -0.8911 23 1 3.8753 -0.6803 0.8889 24 1 3.6586 -3.1501 0.8892 25 1 3.6580 -3.1504 -0.8907 26 1 5.9150 -2.1226 -0.8909 27 1 5.9149 -2.1225 0.8890 28 1 5.6984 -4.5931 0.8883 29 1 5.6984 -4.5924 -0.8916 30 1 10.2883 -5.1723 -0.5453 31 1 10.2439 -6.3088 0.8390 32 1 10.4721 -6.9329 -2.0032 33 1 10.4909 -8.0616 -0.6196 34 1 6.7174 -6.8519 -1.1506 35 1 7.8420 -5.8710 -2.1447 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703058725.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:10 Heat of formation + Delta-G solvation = -131.355910 kcal Electronic energy + Delta-G solvation = -15510.157530 eV Core-core repulsion = 12826.099747 eV Total energy + Delta-G solvation = -2684.057783 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.05477 -36.98130 -36.83027 -34.64179 -33.14595 -31.75390 -30.12035 -27.24260 -23.87517 -23.63828 -22.38888 -21.71860 -18.87603 -18.55368 -17.74301 -17.25792 -16.60312 -16.37735 -16.05562 -15.78398 -15.05488 -14.93663 -14.75387 -14.40404 -13.95887 -13.76985 -13.66207 -13.18937 -12.88512 -12.57414 -12.37545 -12.26744 -12.08651 -11.94238 -11.76407 -11.73721 -11.39083 -11.32166 -10.77671 -10.76577 -10.60623 -9.31409 -8.30083 -6.34378 0.47079 1.36711 1.37600 1.50461 1.60756 2.36412 2.67466 3.05453 3.07311 3.48214 3.80823 3.91747 4.01069 4.08486 4.22512 4.34624 4.36632 4.53075 4.70823 4.79294 4.82979 4.87907 4.90777 4.92589 5.04023 5.06988 5.12423 5.23659 5.55676 5.62923 5.67862 5.91607 6.28403 6.74162 7.30609 8.86864 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.050782 B = 0.003875 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.246033 B = 7224.893448 C = 7587.660389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.952 3.048 4 H -0.273 1.273 5 H -0.239 1.239 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.030 0.970 9 C -0.018 4.018 10 C -0.093 4.093 11 C -0.103 4.103 12 C -0.444 4.444 13 S 1.313 4.687 14 O -0.912 6.912 15 C -0.455 4.455 16 H 0.083 0.917 17 C -0.129 4.129 18 C 0.048 3.952 19 O -0.401 6.401 20 C 0.073 3.927 21 H 0.266 0.734 22 H 0.032 0.968 23 H 0.008 0.992 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.100 0.900 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.155 0.845 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.061 -11.813 -7.311 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.162 1.162 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.048 0.952 9 C -0.056 4.056 10 C -0.132 4.132 11 C -0.141 4.141 12 C -0.581 4.581 13 S 1.513 4.487 14 O -0.908 6.908 15 C -0.573 4.573 16 H 0.101 0.899 17 C -0.168 4.168 18 C -0.030 4.030 19 O -0.320 6.320 20 C -0.004 4.004 21 H 0.075 0.925 22 H 0.050 0.950 23 H 0.027 0.973 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.173 0.827 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 23.506 -11.156 -7.336 27.034 hybrid contribution -1.338 -0.256 2.628 2.961 sum 22.168 -11.411 -4.708 25.373 Atomic orbital electron populations 1.70079 1.08383 1.28194 1.52802 1.26089 0.95669 1.03752 0.94106 0.85629 0.79846 0.78018 0.79004 1.19881 1.16188 1.20697 1.21568 0.92429 0.93037 1.50289 0.95177 1.19617 0.93691 0.95641 0.96620 1.21356 0.94222 0.96811 1.00824 1.21251 0.95762 0.94219 1.02884 1.27694 1.19255 1.02356 1.08828 1.69670 0.85601 0.83963 1.09433 1.93010 1.75362 1.68699 1.53690 1.29225 1.03035 1.20003 1.05013 0.89866 1.22702 0.91952 1.00738 1.01394 1.23312 0.84761 0.96457 0.98430 1.88849 1.19084 1.34352 1.89756 1.23521 0.95295 0.87586 0.93976 0.92504 0.94986 0.97328 0.94830 0.91537 0.88119 0.93959 0.91063 0.82747 0.87860 0.91036 0.89280 0.89604 0.87783 0.86760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 2 C 0.00 0.01 5.47 84.65 0.46 0.47 16 3 Si 0.95 44.69 27.47 68.60 1.88 46.57 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 5 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.54 -31.45 9.66 25.60 0.25 -31.20 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 9 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 10 C -0.09 -3.53 5.15 30.60 0.16 -3.37 16 11 C -0.10 -2.91 5.22 30.59 0.16 -2.75 16 12 C -0.44 -9.17 5.71 71.98 0.41 -8.76 16 13 S 1.31 22.82 12.51 -56.49 -0.71 22.11 16 14 O -0.91 -29.41 18.14 -148.98 -2.70 -32.11 16 15 C -0.46 -6.91 3.66 31.90 0.12 -6.80 16 16 H 0.08 1.60 8.14 -2.39 -0.02 1.59 16 17 C -0.13 -1.66 6.62 31.58 0.21 -1.45 16 18 C 0.05 0.56 7.70 72.35 0.56 1.11 16 19 O -0.40 -6.77 11.52 -148.98 -1.72 -8.49 16 20 C 0.07 0.86 6.81 72.67 0.49 1.35 16 21 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 22 H 0.03 1.41 7.20 -2.39 -0.02 1.39 16 23 H 0.01 0.40 7.57 -2.38 -0.02 0.38 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.15 2.04 7.99 -2.39 -0.02 2.02 16 30 H 0.10 0.88 7.82 -2.39 -0.02 0.86 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.10 8.14 -2.38 -0.02 1.09 16 35 H 0.11 0.52 8.04 -2.39 -0.02 0.50 16 Total: -1.00 -82.78 300.72 0.98 -81.80 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 0.98 Total: 2.75 kcal Atomic # 6 Polarization: -55.07 SS G_CDS: 2.94 Total: -52.13 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: 0.30 Total: -60.51 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -4.42 Total: -40.60 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: 22.82 SS G_CDS: -0.71 Total: 22.11 kcal Total: -82.78 0.98 -81.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703058725.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.553 kcal (2) G-P(sol) polarization free energy of solvation -82.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds