Wall clock time and date at job start Mon Mar 30 2020 04:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46995 * 2 1 4 4 C 1.50695 * 109.47439 * 239.99665 * 2 1 3 5 5 H 1.08003 * 119.99990 * 240.00419 * 4 2 1 6 6 C 1.37877 * 120.00007 * 59.99699 * 4 2 1 7 7 N 1.31512 * 120.00209 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99851 * 180.02562 * 6 4 2 9 9 H 1.48507 * 109.47192 * 60.00581 * 8 6 4 10 10 H 1.48503 * 109.47148 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47372 * 300.00091 * 8 6 4 12 12 S 1.81401 * 109.47031 * 119.99397 * 2 1 3 13 13 O 1.42096 * 109.47023 * 59.97380 * 12 2 1 14 14 C 1.81393 * 102.99906 * 176.36541 * 12 2 1 15 15 H 1.09000 * 110.82866 * 292.35960 * 14 12 2 16 16 C 1.54991 * 110.90932 * 56.00995 * 14 12 2 17 17 O 1.44379 * 103.48974 * 155.22346 * 16 14 12 18 18 C 1.43754 * 106.97618 * 319.93700 * 17 16 14 19 19 C 1.52998 * 109.87522 * 267.09274 * 18 17 16 20 20 C 1.52998 * 110.00369 * 146.01028 * 18 17 16 21 21 C 1.54099 * 107.29007 * 26.51373 * 18 17 16 22 22 H 1.08996 * 109.47600 * 293.97973 * 1 2 3 23 23 H 1.09000 * 109.46915 * 53.97604 * 1 2 3 24 24 H 1.09003 * 109.46943 * 173.97272 * 1 2 3 25 25 H 0.97001 * 119.99923 * 179.97438 * 7 6 4 26 26 H 1.09000 * 110.61707 * 273.71808 * 16 14 12 27 27 H 1.08991 * 110.61832 * 36.72194 * 16 14 12 28 28 H 1.09002 * 109.46641 * 177.82980 * 19 18 17 29 29 H 1.09001 * 109.47398 * 297.82448 * 19 18 17 30 30 H 1.08993 * 109.47593 * 57.83328 * 19 18 17 31 31 H 1.09002 * 109.47077 * 302.09844 * 20 18 17 32 32 H 1.08995 * 109.47217 * 62.09192 * 20 18 17 33 33 H 1.08997 * 109.47253 * 182.09672 * 20 18 17 34 34 H 1.08990 * 110.48654 * 239.29460 * 21 18 17 35 35 H 1.09001 * 110.48568 * 116.64735 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3215 -1.1206 -4.0078 9 1 1.8259 -2.5206 -4.0075 10 1 1.8261 -0.4210 -5.2204 11 1 3.8065 -1.1212 -4.0080 12 16 2.1347 -0.8550 1.4812 13 8 1.6605 -2.1945 1.4817 14 6 3.9337 -0.8504 1.2492 15 1 4.2179 -1.4861 0.4106 16 6 4.4625 0.5933 1.0532 17 8 5.8394 0.5083 1.4789 18 6 5.8681 -0.3379 2.6407 19 6 5.7615 0.5138 3.9072 20 6 7.1659 -1.1478 2.6663 21 6 4.6589 -1.2883 2.5450 22 1 -0.3634 0.4176 0.9389 23 1 -0.3633 0.6044 -0.8312 24 1 -0.3633 -1.0220 -0.1079 25 1 0.7096 1.1615 -3.4845 26 1 4.4023 0.8850 0.0046 27 1 3.9095 1.2929 1.6797 28 1 5.7450 -0.1365 4.7819 29 1 6.6195 1.1832 3.9683 30 1 4.8440 1.1012 3.8740 31 1 7.2438 -1.7381 1.7533 32 1 8.0163 -0.4695 2.7340 33 1 7.1620 -1.8130 3.5298 34 1 4.0060 -1.1630 3.4086 35 1 4.9924 -2.3230 2.4645 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703088878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:05:05 Heat of formation + Delta-G solvation = -121.297267 kcal Electronic energy + Delta-G solvation = -16834.039684 eV Core-core repulsion = 14150.418077 eV Total energy + Delta-G solvation = -2683.621607 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.60366 -36.53710 -36.01704 -33.96780 -32.80523 -32.31884 -28.18732 -27.47932 -26.70900 -23.53919 -22.74147 -20.94879 -18.68476 -18.12246 -17.61031 -16.83058 -16.78610 -15.93778 -15.53529 -15.16183 -15.01658 -14.68089 -14.07757 -13.88547 -13.69290 -13.34505 -13.09475 -13.03015 -12.93557 -12.84214 -12.71017 -12.51313 -12.32209 -12.30923 -11.91875 -11.81498 -11.56545 -11.23612 -10.68542 -10.52612 -10.37694 -9.07642 -8.19131 -6.39760 1.00022 1.26453 1.28597 1.35057 1.98120 2.30209 2.93056 3.02132 3.14138 3.58778 3.87207 4.02981 4.15330 4.26378 4.39333 4.67189 4.74876 4.80243 4.82396 4.88649 4.91255 4.91743 5.00565 5.03581 5.07818 5.15126 5.34593 5.35679 5.51277 5.62641 5.74516 6.10175 6.11391 6.66716 7.27317 8.79185 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026269 B = 0.007944 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.636106 B = 3523.956038 C = 3991.051063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.252 4.252 3 H 0.090 0.910 4 C -0.539 4.539 5 H 0.030 0.970 6 C 0.035 3.965 7 N -0.894 5.894 8 Si 0.932 3.068 9 H -0.286 1.286 10 H -0.270 1.270 11 H -0.272 1.272 12 S 1.279 4.721 13 O -0.924 6.924 14 C -0.434 4.434 15 H 0.064 0.936 16 C 0.087 3.913 17 O -0.388 6.388 18 C 0.090 3.910 19 C -0.162 4.162 20 C -0.144 4.144 21 C -0.115 4.115 22 H 0.064 0.936 23 H 0.068 0.932 24 H 0.007 0.993 25 H 0.266 0.734 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.068 0.932 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.910 3.373 13.875 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.372 4.372 3 H 0.108 0.892 4 C -0.578 4.578 5 H 0.048 0.952 6 C -0.168 4.168 7 N -0.531 5.531 8 Si 0.758 3.242 9 H -0.212 1.212 10 H -0.194 1.194 11 H -0.197 1.197 12 S 1.482 4.518 13 O -0.920 6.920 14 C -0.552 4.552 15 H 0.082 0.918 16 C 0.010 3.990 17 O -0.308 6.308 18 C 0.051 3.949 19 C -0.219 4.219 20 C -0.201 4.201 21 C -0.154 4.154 22 H 0.083 0.917 23 H 0.087 0.913 24 H 0.026 0.974 25 H 0.075 0.925 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.488 3.181 14.410 16.548 hybrid contribution 0.529 -1.961 -3.491 4.039 sum 8.016 1.220 10.919 13.600 Atomic orbital electron populations 1.21389 0.95481 0.99137 1.01742 1.24903 0.99761 1.04893 1.07603 0.89243 1.20958 1.32603 1.11881 0.92344 0.95215 1.25470 0.94857 0.95424 1.01001 1.69912 1.36011 1.22917 1.24285 0.86022 0.79101 0.78710 0.80365 1.21199 1.19446 1.19697 1.68373 0.83653 0.95040 1.04762 1.92888 1.75475 1.38970 1.84638 1.28936 1.19742 1.03497 1.03006 0.91757 1.23173 0.82219 0.92353 1.01294 1.88847 1.26485 1.69418 1.46068 1.22349 0.95301 0.90084 0.87192 1.22284 1.03542 1.00446 0.95618 1.21942 0.96049 0.99764 1.02348 1.22831 0.96880 1.00191 0.95450 0.91723 0.91298 0.97415 0.92473 0.90053 0.87756 0.89427 0.91589 0.90776 0.94035 0.91321 0.89124 0.87450 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.88 71.98 0.64 -4.84 16 2 C -0.25 -11.60 2.43 29.85 0.07 -11.53 16 3 H 0.09 3.91 7.89 -2.39 -0.02 3.89 16 4 C -0.54 -29.86 8.10 25.60 0.21 -29.65 16 5 H 0.03 1.74 6.96 -2.91 -0.02 1.72 16 6 C 0.04 1.94 5.30 84.65 0.45 2.39 16 7 N -0.89 -49.65 11.39 21.45 0.24 -49.40 16 8 Si 0.93 44.88 29.54 68.60 2.03 46.90 16 9 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 12 S 1.28 47.80 11.99 -56.49 -0.68 47.13 16 13 O -0.92 -46.51 18.13 -148.98 -2.70 -49.21 16 14 C -0.43 -15.16 3.17 31.90 0.10 -15.06 16 15 H 0.06 2.76 7.45 -2.39 -0.02 2.74 16 16 C 0.09 2.73 6.48 72.66 0.47 3.20 16 17 O -0.39 -12.13 10.86 -148.98 -1.62 -13.75 16 18 C 0.09 2.20 1.19 -10.42 -0.01 2.18 16 19 C -0.16 -2.75 8.61 71.98 0.62 -2.13 16 20 C -0.14 -3.11 8.67 71.98 0.62 -2.48 16 21 C -0.11 -3.09 5.88 31.59 0.19 -2.90 16 22 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.07 3.49 6.26 -2.39 -0.01 3.47 16 24 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 26 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 27 H 0.10 2.46 8.02 -2.39 -0.02 2.45 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.07 1.13 8.11 -2.39 -0.02 1.11 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.11 2.23 7.37 -2.39 -0.02 2.21 16 35 H 0.07 1.96 7.70 -2.39 -0.02 1.94 16 Total: -1.00 -73.62 295.15 1.68 -71.94 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: 1.05 Total: 7.21 kcal Atomic # 6 Polarization: -64.17 SS G_CDS: 3.36 Total: -60.82 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.24 Total: -49.40 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -4.32 Total: -62.96 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 47.80 SS G_CDS: -0.68 Total: 47.13 kcal Total: -73.62 1.68 -71.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703088878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.354 kcal (2) G-P(sol) polarization free energy of solvation -73.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds