Wall clock time and date at job start Mon Mar 30 2020 03:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.99023 * 2 1 4 4 C 1.54104 * 109.87375 * 121.08320 * 2 1 3 5 5 C 1.54809 * 104.18720 * 117.39437 * 4 2 1 6 6 H 1.09003 * 110.90622 * 97.35025 * 5 4 2 7 7 S 1.81395 * 110.90806 * 220.91818 * 5 4 2 8 8 O 1.42103 * 109.47113 * 291.38598 * 7 5 4 9 9 C 1.81396 * 103.00178 * 174.99925 * 7 5 4 10 10 C 1.52996 * 109.47320 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.54993 * 102.09430 * 339.12028 * 5 4 2 20 20 O 1.43736 * 109.88064 * 238.91206 * 2 1 3 21 21 H 1.08998 * 109.47363 * 298.91971 * 1 2 3 22 22 H 1.09004 * 109.46962 * 58.91740 * 1 2 3 23 23 H 1.08993 * 109.47200 * 178.91483 * 1 2 3 24 24 H 1.09009 * 109.46817 * 181.08095 * 3 2 1 25 25 H 1.08997 * 109.47227 * 301.07704 * 3 2 1 26 26 H 1.08998 * 109.47219 * 61.08590 * 3 2 1 27 27 H 1.08999 * 110.48876 * 358.71379 * 4 2 1 28 28 H 1.09008 * 110.48421 * 236.06947 * 4 2 1 29 29 H 1.09004 * 109.46947 * 59.99958 * 9 7 5 30 30 H 1.09000 * 109.47486 * 300.00386 * 9 7 5 31 31 H 1.09004 * 109.47066 * 60.00127 * 10 9 7 32 32 H 1.08994 * 109.47405 * 299.99958 * 10 9 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.08994 * 110.62168 * 155.52570 * 19 5 4 35 35 H 1.09005 * 110.61754 * 278.52707 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 6 2.0539 -0.7482 1.2412 5 6 2.8323 -1.9525 0.6577 6 1 3.9003 -1.7394 0.6106 7 16 2.5173 -3.4558 1.6227 8 8 3.1094 -3.3264 2.9080 9 6 3.3912 -4.7361 0.6806 10 6 3.2199 -6.0878 1.3766 11 6 3.9455 -7.1515 0.5936 12 1 4.4761 -6.8896 -0.3099 13 6 3.9371 -8.4581 1.0340 14 7 3.2913 -8.7769 2.1344 15 14 4.8428 -9.7752 0.0675 16 1 6.2395 -9.8791 0.5612 17 1 4.1566 -11.0800 0.2459 18 1 4.8526 -9.4139 -1.3728 19 6 2.2281 -2.0714 -0.7646 20 8 2.0188 -0.6980 -1.1576 21 1 -0.3634 0.4969 0.8995 22 1 -0.3633 0.5306 -0.8802 23 1 -0.3633 -1.0274 -0.0195 24 1 3.1429 1.4280 -0.0194 25 1 1.6788 1.9606 -0.8801 26 1 1.7103 1.9491 0.8995 27 1 1.2236 -1.0930 1.8575 28 1 2.7196 -0.1078 1.8199 29 1 4.4511 -4.4875 0.6264 30 1 2.9790 -4.7910 -0.3269 31 1 2.1601 -6.3366 1.4312 32 1 3.6325 -6.0327 2.3840 33 1 3.2851 -9.6962 2.4440 34 1 2.9294 -2.5613 -1.4399 35 1 1.2812 -2.6108 -0.7355 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000705495622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:19 Heat of formation + Delta-G solvation = -101.952677 kcal Electronic energy + Delta-G solvation = -16070.581054 eV Core-core repulsion = 13387.798291 eV Total energy + Delta-G solvation = -2682.782763 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.78326 -35.22410 -33.71983 -33.19019 -31.91237 -30.91221 -27.56921 -26.15207 -25.15514 -22.32313 -21.02146 -20.18443 -17.14953 -16.77000 -16.28987 -15.85149 -15.10712 -14.57210 -14.42522 -14.04994 -13.91290 -13.60849 -13.28503 -12.95840 -12.42559 -12.31041 -12.18284 -11.86381 -11.77024 -11.47872 -11.15295 -11.00021 -10.92557 -10.78650 -10.74627 -10.15870 -10.08091 -9.73238 -9.47660 -9.03621 -8.43488 -7.78988 -6.06468 -4.10762 1.88809 3.06935 3.28667 3.35091 3.37843 3.77291 4.11940 4.41085 4.45430 4.67002 4.79180 4.94306 5.01110 5.23132 5.28744 5.41779 5.45471 5.52974 5.61374 5.68420 5.74285 5.81398 5.89837 5.95636 6.00412 6.10051 6.13133 6.75917 6.88626 7.46260 7.57615 7.88488 8.29412 8.93854 9.53583 11.04195 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046828 B = 0.004746 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.787666 B = 5898.171986 C = 6187.481150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.099 3.901 3 C -0.143 4.143 4 C -0.112 4.112 5 C -0.460 4.460 6 H 0.096 0.904 7 S 1.228 4.772 8 O -0.849 6.849 9 C -0.415 4.415 10 C 0.038 3.962 11 C -0.519 4.519 12 H 0.057 0.943 13 C 0.058 3.942 14 N -0.893 5.893 15 Si 0.895 3.105 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.273 1.273 19 C 0.080 3.920 20 O -0.367 6.367 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.029 0.971 32 H 0.023 0.977 33 H 0.263 0.737 34 H 0.097 0.903 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.634 16.507 -5.355 18.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 C -0.201 4.201 4 C -0.150 4.150 5 C -0.575 4.575 6 H 0.115 0.885 7 S 1.428 4.572 8 O -0.844 6.844 9 C -0.554 4.554 10 C 0.000 4.000 11 C -0.559 4.559 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.531 5.531 15 Si 0.723 3.277 16 H -0.207 1.207 17 H -0.210 1.210 18 H -0.198 1.198 19 C 0.003 3.997 20 O -0.286 6.286 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.100 0.900 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.047 0.953 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.116 0.884 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.155 16.429 -4.581 18.905 hybrid contribution 2.883 -0.500 -0.437 2.959 sum -5.272 15.929 -5.018 17.513 Atomic orbital electron populations 1.22286 0.94565 1.03014 1.02425 1.22098 0.93718 0.93038 0.85301 1.21899 1.01703 0.94208 1.02247 1.22658 0.99676 0.95160 0.97553 1.29343 1.05656 1.15218 1.07250 0.88503 1.70234 1.17983 0.85603 0.83386 1.93097 1.79549 1.83111 1.28646 1.27594 1.08249 1.10150 1.09452 1.18797 0.98138 0.87354 0.95756 1.21143 1.32761 0.92370 1.09618 0.92449 1.25042 0.95522 0.98743 0.95114 1.69961 1.42151 1.18959 1.22066 0.86539 0.79794 0.81044 0.80318 1.20688 1.21038 1.19768 1.23186 1.00016 0.84397 0.92103 1.88871 1.85973 1.20803 1.32961 0.91540 0.91883 0.91548 0.92089 0.91929 0.91367 0.89993 0.90375 0.90763 0.87542 0.95284 0.95903 0.92757 0.88438 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 8.61 37.16 0.32 -1.09 16 2 C 0.10 1.05 1.19 -90.04 -0.11 0.94 16 3 C -0.14 -1.34 8.67 37.16 0.32 -1.02 16 4 C -0.11 -1.29 5.88 -25.20 -0.15 -1.44 16 5 C -0.46 -6.05 3.65 -24.73 -0.09 -6.14 16 6 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 7 S 1.23 19.53 12.51 -107.50 -1.34 18.19 16 8 O -0.85 -19.02 18.14 -35.23 -0.64 -19.66 16 9 C -0.41 -7.99 5.64 37.16 0.21 -7.78 16 10 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 11 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 15 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 C 0.08 0.92 6.75 38.21 0.26 1.18 16 20 O -0.37 -4.65 10.85 -35.23 -0.38 -5.03 16 21 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.53 8.11 -51.93 -0.42 0.10 16 24 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.82 7.37 -51.93 -0.38 0.44 16 28 H 0.08 0.91 7.70 -51.92 -0.40 0.51 16 29 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 30 H 0.11 1.73 7.99 -51.92 -0.41 1.32 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 0.69 8.02 -51.93 -0.42 0.28 16 LS Contribution 302.26 15.07 4.55 4.55 Total: -1.00 -35.50 302.26 -7.68 -43.19 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -5.80 Total: -3.95 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 0.21 Total: -27.81 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -1.02 Total: -24.68 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 19.53 SS G_CDS: -1.34 Total: 18.19 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -35.50 -7.68 -43.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705495622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.767 kcal (2) G-P(sol) polarization free energy of solvation -35.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds