Wall clock time and date at job start Mon Mar 30 2020 03:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.99023 * 2 1 4 4 C 1.54104 * 109.87375 * 121.08320 * 2 1 3 5 5 C 1.54809 * 104.18720 * 117.39437 * 4 2 1 6 6 H 1.09003 * 110.90622 * 97.35025 * 5 4 2 7 7 S 1.81395 * 110.90806 * 220.91818 * 5 4 2 8 8 O 1.42103 * 109.47113 * 291.38598 * 7 5 4 9 9 C 1.81396 * 103.00178 * 174.99925 * 7 5 4 10 10 C 1.52996 * 109.47320 * 179.97438 * 9 7 5 11 11 C 1.50702 * 109.47159 * 179.97438 * 10 9 7 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72211 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 C 1.54993 * 102.09430 * 339.12028 * 5 4 2 20 20 O 1.43736 * 109.88064 * 238.91206 * 2 1 3 21 21 H 1.08998 * 109.47363 * 298.91971 * 1 2 3 22 22 H 1.09004 * 109.46962 * 58.91740 * 1 2 3 23 23 H 1.08993 * 109.47200 * 178.91483 * 1 2 3 24 24 H 1.09009 * 109.46817 * 181.08095 * 3 2 1 25 25 H 1.08997 * 109.47227 * 301.07704 * 3 2 1 26 26 H 1.08998 * 109.47219 * 61.08590 * 3 2 1 27 27 H 1.08999 * 110.48876 * 358.71379 * 4 2 1 28 28 H 1.09008 * 110.48421 * 236.06947 * 4 2 1 29 29 H 1.09004 * 109.46947 * 59.99958 * 9 7 5 30 30 H 1.09000 * 109.47486 * 300.00386 * 9 7 5 31 31 H 1.09004 * 109.47066 * 60.00127 * 10 9 7 32 32 H 1.08994 * 109.47405 * 299.99958 * 10 9 7 33 33 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 34 34 H 1.08994 * 110.62168 * 155.52570 * 19 5 4 35 35 H 1.09005 * 110.61754 * 278.52707 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0530 1.4378 0.0000 4 6 2.0539 -0.7482 1.2412 5 6 2.8323 -1.9525 0.6577 6 1 3.9003 -1.7394 0.6106 7 16 2.5173 -3.4558 1.6227 8 8 3.1094 -3.3264 2.9080 9 6 3.3912 -4.7361 0.6806 10 6 3.2199 -6.0878 1.3766 11 6 3.9455 -7.1515 0.5936 12 1 4.4761 -6.8896 -0.3099 13 6 3.9371 -8.4581 1.0340 14 7 3.2913 -8.7769 2.1344 15 14 4.8428 -9.7752 0.0675 16 1 6.2395 -9.8791 0.5612 17 1 4.1566 -11.0800 0.2459 18 1 4.8526 -9.4139 -1.3728 19 6 2.2281 -2.0714 -0.7646 20 8 2.0188 -0.6980 -1.1576 21 1 -0.3634 0.4969 0.8995 22 1 -0.3633 0.5306 -0.8802 23 1 -0.3633 -1.0274 -0.0195 24 1 3.1429 1.4280 -0.0194 25 1 1.6788 1.9606 -0.8801 26 1 1.7103 1.9491 0.8995 27 1 1.2236 -1.0930 1.8575 28 1 2.7196 -0.1078 1.8199 29 1 4.4511 -4.4875 0.6264 30 1 2.9790 -4.7910 -0.3269 31 1 2.1601 -6.3366 1.4312 32 1 3.6325 -6.0327 2.3840 33 1 3.2851 -9.6962 2.4440 34 1 2.9294 -2.5613 -1.4399 35 1 1.2812 -2.6108 -0.7355 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705495622.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:19 Heat of formation + Delta-G solvation = -127.498314 kcal Electronic energy + Delta-G solvation = -16071.688796 eV Core-core repulsion = 13387.798291 eV Total energy + Delta-G solvation = -2683.890505 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.67242 -36.85203 -35.75111 -34.02022 -32.98774 -32.80536 -28.23206 -27.55387 -26.65184 -23.65452 -22.64598 -21.02557 -18.80017 -18.33137 -17.51199 -16.92650 -16.51607 -16.07750 -15.75697 -15.53990 -15.13051 -14.79793 -14.30625 -14.13484 -13.98690 -13.58390 -13.16129 -13.10504 -12.88516 -12.81212 -12.62796 -12.53521 -12.22795 -11.96714 -11.90291 -11.85462 -11.64940 -11.47889 -10.69894 -10.60395 -10.57345 -9.25796 -8.22093 -6.35139 0.54136 1.40140 1.41214 1.52713 1.71111 2.39869 2.72734 2.97798 3.10534 3.46928 3.75929 3.93024 4.03937 4.20192 4.25796 4.32427 4.44675 4.64494 4.72913 4.78376 4.82558 4.88772 4.96153 4.99235 5.04279 5.07731 5.31609 5.40899 5.46690 5.49209 5.75823 6.03955 6.16546 6.79501 7.34405 8.89039 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046828 B = 0.004746 C = 0.004524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.787666 B = 5898.171986 C = 6187.481150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 C -0.145 4.145 4 C -0.118 4.118 5 C -0.449 4.449 6 H 0.083 0.917 7 S 1.290 4.710 8 O -0.917 6.917 9 C -0.418 4.418 10 C 0.035 3.965 11 C -0.542 4.542 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.932 5.932 15 Si 0.967 3.033 16 H -0.280 1.280 17 H -0.278 1.278 18 H -0.257 1.257 19 C 0.076 3.924 20 O -0.383 6.383 21 H 0.082 0.918 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.142 0.858 31 H 0.027 0.973 32 H -0.025 1.025 33 H 0.266 0.734 34 H 0.104 0.896 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.512 17.305 -7.193 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 C -0.202 4.202 4 C -0.157 4.157 5 C -0.567 4.567 6 H 0.101 0.899 7 S 1.492 4.508 8 O -0.913 6.913 9 C -0.556 4.556 10 C -0.003 4.003 11 C -0.581 4.581 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.572 5.572 15 Si 0.791 3.209 16 H -0.206 1.206 17 H -0.203 1.203 18 H -0.181 1.181 19 C -0.001 4.001 20 O -0.302 6.302 21 H 0.100 0.900 22 H 0.085 0.915 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.104 0.896 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.160 0.840 31 H 0.046 0.954 32 H -0.007 1.007 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.029 17.199 -6.418 20.458 hybrid contribution 3.141 -0.602 0.120 3.200 sum -5.888 16.597 -6.298 18.703 Atomic orbital electron populations 1.22311 0.92631 1.03891 1.03484 1.22279 0.95207 0.93109 0.83912 1.21944 1.00952 0.93848 1.03470 1.22814 1.00025 0.94395 0.98469 1.29143 1.05571 1.13702 1.08308 0.89859 1.69386 1.15347 0.85165 0.80892 1.92976 1.80402 1.84804 1.33105 1.27536 1.08272 1.08437 1.11377 1.18662 0.97349 0.90593 0.93679 1.21639 1.32944 0.93395 1.10081 0.91698 1.26020 0.96338 1.01417 0.96108 1.70095 1.43677 1.19650 1.23814 0.85416 0.78094 0.77934 0.79425 1.20606 1.20331 1.18077 1.23403 1.01574 0.84679 0.90431 1.88865 1.86323 1.21204 1.33844 0.89952 0.91466 0.90801 0.93326 0.91312 0.89621 0.88286 0.90707 0.92172 0.83956 0.95423 1.00684 0.92563 0.87798 0.87543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 8.61 71.98 0.62 -1.64 16 2 C 0.09 1.76 1.19 -10.42 -0.01 1.75 16 3 C -0.14 -2.39 8.67 71.98 0.62 -1.77 16 4 C -0.12 -2.49 5.88 31.58 0.19 -2.30 16 5 C -0.45 -11.11 3.65 31.89 0.12 -10.99 16 6 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 7 S 1.29 40.42 12.51 -56.49 -0.71 39.71 16 8 O -0.92 -42.06 18.14 -148.98 -2.70 -44.77 16 9 C -0.42 -16.01 5.64 71.98 0.41 -15.60 16 10 C 0.04 1.85 4.98 29.85 0.15 2.00 16 11 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 13 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 14 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 15 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 19 C 0.08 1.54 6.75 72.66 0.49 2.03 16 20 O -0.38 -8.69 10.85 -148.98 -1.62 -10.31 16 21 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 22 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 23 H 0.07 0.90 8.11 -2.39 -0.02 0.88 16 24 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.10 1.73 7.37 -2.39 -0.02 1.72 16 28 H 0.07 1.64 7.70 -2.38 -0.02 1.62 16 29 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.14 4.33 7.99 -2.39 -0.02 4.31 16 31 H 0.03 1.42 8.14 -2.38 -0.02 1.40 16 32 H -0.03 -1.54 8.14 -2.39 -0.02 -1.56 16 33 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 34 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 1.52 8.02 -2.38 -0.02 1.50 16 Total: -1.00 -78.49 302.26 1.60 -76.89 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: 1.04 Total: 5.45 kcal Atomic # 6 Polarization: -59.68 SS G_CDS: 3.27 Total: -56.40 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: 0.28 Total: -56.48 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -4.32 Total: -55.07 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: 40.42 SS G_CDS: -0.71 Total: 39.71 kcal Total: -78.49 1.60 -76.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705495622.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.608 kcal (2) G-P(sol) polarization free energy of solvation -78.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds