Wall clock time and date at job start Mon Mar 30 2020 04:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99896 * 2 1 4 4 H 1.48504 * 109.47431 * 264.83426 * 3 2 1 5 5 H 1.48497 * 109.47546 * 24.83492 * 3 2 1 6 6 H 1.48505 * 109.47355 * 144.83694 * 3 2 1 7 7 C 1.37877 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00371 * 4.91728 * 7 2 1 9 9 C 1.50701 * 119.99711 * 184.91447 * 7 2 1 10 10 H 1.08999 * 109.60685 * 335.48148 * 9 7 2 11 11 C 1.53341 * 109.73814 * 95.88908 * 9 7 2 12 12 C 1.53075 * 108.42410 * 52.30419 * 11 9 7 13 13 C 1.50174 * 109.89041 * 48.89946 * 12 11 9 14 14 O 1.21282 * 118.24422 * 162.43915 * 13 12 11 15 15 N 1.33345 * 123.51243 * 342.42037 * 13 12 11 16 16 C 1.45758 * 124.10587 * 2.22199 * 15 13 12 17 17 H 1.08998 * 109.13770 * 101.12871 * 16 15 13 18 18 C 1.50699 * 109.30205 * 220.61562 * 16 15 13 19 19 C 1.38220 * 119.61938 * 241.15481 * 18 16 15 20 20 C 1.38628 * 119.16421 * 180.02562 * 19 18 16 21 21 C 1.38671 * 118.42139 * 359.97438 * 20 19 18 22 22 C 1.38188 * 119.16302 * 359.97438 * 21 20 19 23 23 N 1.31860 * 119.61931 * 61.15329 * 18 16 15 24 24 H 0.96998 * 119.99812 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.67663 * 172.03551 * 11 9 7 26 26 H 1.09001 * 109.67583 * 292.53400 * 11 9 7 27 27 H 1.09006 * 109.40021 * 169.02827 * 12 11 9 28 28 H 1.08997 * 109.40137 * 288.77300 * 12 11 9 29 29 H 0.96997 * 117.95355 * 182.22365 * 15 13 12 30 30 H 1.07997 * 120.42020 * 0.02562 * 19 18 16 31 31 H 1.08004 * 120.79245 * 180.25292 * 20 19 18 32 32 H 1.08001 * 120.42306 * 180.02562 * 21 20 19 33 33 H 1.07994 * 119.62057 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6058 1.9835 -1.3944 5 1 1.3963 2.6817 0.5880 6 1 3.4879 1.4742 0.8063 7 6 2.0045 -1.1941 0.0005 8 1 1.4676 -2.1277 -0.0792 9 6 3.5074 -1.1964 0.1123 10 1 3.9022 -0.2455 -0.2455 11 6 3.9176 -1.4060 1.5749 12 6 3.2019 -2.6513 2.1044 13 6 3.3741 -3.7887 1.1390 14 8 3.1603 -4.9149 1.5350 15 7 3.7491 -3.6266 -0.1303 16 6 4.0825 -2.3388 -0.7260 17 1 5.1667 -2.2383 -0.7763 18 6 3.5109 -2.2712 -2.1187 19 6 4.3595 -2.1156 -3.1986 20 6 3.8236 -2.0540 -4.4756 21 6 2.4478 -2.1522 -4.6194 22 6 1.6624 -2.3077 -3.4931 23 7 2.2070 -2.3612 -2.2931 24 1 -0.4850 0.8400 -0.0004 25 1 4.9964 -1.5486 1.6367 26 1 3.6280 -0.5367 2.1655 27 1 3.6247 -2.9287 3.0700 28 1 2.1403 -2.4354 2.2239 29 1 3.8034 -4.4151 -0.6926 30 1 5.4267 -2.0429 -3.0495 31 1 4.4626 -1.9369 -5.3384 32 1 1.9959 -2.1086 -5.5994 33 1 0.5903 -2.3853 -3.5966 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709954500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:28 Heat of formation + Delta-G solvation = 2.311276 kcal Electronic energy + Delta-G solvation = -18276.726430 eV Core-core repulsion = 15495.313691 eV Total energy + Delta-G solvation = -2781.412739 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.16836 -38.95448 -36.11287 -33.00416 -32.02459 -31.65461 -30.99964 -28.49689 -25.37269 -23.86541 -22.94289 -21.71226 -20.97065 -18.08582 -17.11485 -16.80243 -15.80379 -15.55318 -15.30090 -14.85469 -14.34545 -14.09494 -13.42489 -13.04792 -13.00179 -12.89047 -12.74057 -12.35941 -12.30726 -11.45435 -11.08198 -10.90479 -10.62889 -10.36898 -9.87480 -9.79131 -9.33675 -9.17926 -9.04653 -8.69195 -8.53892 -8.32350 -8.20897 -6.00826 -3.93531 1.55709 1.82026 3.23982 3.31456 3.35107 3.45346 4.01242 4.41923 4.50090 4.81685 5.06905 5.23808 5.30765 5.42997 5.49276 5.58127 5.78036 5.81488 5.93348 6.00976 6.07874 6.21270 6.34103 6.51596 6.57751 6.65946 6.84316 6.91050 7.01659 7.20903 7.47289 7.69843 8.09048 8.55593 8.77439 8.98689 9.19001 9.60063 11.11935 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.013644 C = 0.009021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.009562 B = 2051.620787 C = 3102.961238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.858 3.142 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.266 1.266 7 C -0.473 4.473 8 H 0.096 0.904 9 C 0.000 4.000 10 H 0.046 0.954 11 C -0.114 4.114 12 C -0.118 4.118 13 C 0.540 3.460 14 O -0.587 6.587 15 N -0.696 5.696 16 C 0.201 3.799 17 H 0.066 0.934 18 C 0.128 3.872 19 C -0.176 4.176 20 C -0.092 4.092 21 C -0.183 4.183 22 C 0.095 3.905 23 N -0.395 5.395 24 H 0.260 0.740 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.113 0.887 29 H 0.387 0.613 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.989 -1.347 -6.268 11.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.686 3.314 4 H -0.208 1.208 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.511 4.511 8 H 0.113 0.887 9 C -0.020 4.020 10 H 0.064 0.936 11 C -0.153 4.153 12 C -0.158 4.158 13 C 0.329 3.671 14 O -0.468 6.468 15 N -0.344 5.344 16 C 0.095 3.905 17 H 0.084 0.916 18 C -0.011 4.011 19 C -0.196 4.196 20 C -0.118 4.118 21 C -0.204 4.204 22 C -0.063 4.063 23 N -0.103 5.103 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.131 0.869 29 H 0.220 0.780 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.142 0.858 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 8.153 -1.686 -5.172 9.801 hybrid contribution 0.883 1.217 -1.358 2.026 sum 9.036 -0.469 -6.530 11.158 Atomic orbital electron populations 1.69883 1.06006 1.26305 1.50960 1.24939 0.94526 0.97921 0.95278 0.87177 0.80477 0.85298 0.78432 1.20759 1.21688 1.19088 1.20863 0.87446 0.95428 1.47394 0.88650 1.19597 0.99088 0.92565 0.90740 0.93551 1.21848 0.96920 0.97240 0.99273 1.21425 1.05019 0.93079 0.96235 1.20177 0.73862 0.90342 0.82766 1.90654 1.52896 1.25977 1.77320 1.45269 1.68579 1.09270 1.11332 1.20009 0.95928 0.85911 0.88691 0.91626 1.21336 0.89680 0.95332 0.94787 1.21924 1.00710 1.03536 0.93448 1.21343 0.95216 0.98232 0.97024 1.22108 0.94757 1.03231 1.00262 1.22944 1.00542 0.95152 0.87660 1.68033 1.11718 1.07342 1.23168 0.92989 0.94174 0.91591 0.90550 0.86871 0.77962 0.85606 0.85798 0.85824 0.83440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.96 55.43 0.77 -25.18 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.86 20.28 26.99 -169.99 -4.59 15.69 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -5.87 6.81 56.52 0.38 -5.49 16 7 C -0.47 -11.86 4.85 -34.44 -0.17 -12.03 16 8 H 0.10 2.72 7.13 -52.49 -0.37 2.35 16 9 C 0.00 -0.01 1.92 -91.63 -0.18 -0.18 16 10 H 0.05 0.99 5.28 -51.93 -0.27 0.71 16 11 C -0.11 -2.15 5.66 -26.52 -0.15 -2.30 16 12 C -0.12 -2.29 5.50 -28.10 -0.15 -2.45 16 13 C 0.54 11.27 7.27 -11.88 -0.09 11.18 16 14 O -0.59 -13.88 17.78 5.56 0.10 -13.78 16 15 N -0.70 -13.09 5.00 -55.99 -0.28 -13.37 16 16 C 0.20 3.64 3.12 -69.52 -0.22 3.43 16 17 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 18 C 0.13 2.35 5.50 -82.59 -0.45 1.90 16 19 C -0.18 -2.64 9.71 -39.44 -0.38 -3.03 16 20 C -0.09 -1.26 10.18 -39.28 -0.40 -1.66 16 21 C -0.18 -2.67 10.11 -39.44 -0.40 -3.07 16 22 C 0.09 1.70 11.18 -17.55 -0.20 1.50 16 23 N -0.40 -8.22 7.44 -9.47 -0.07 -8.29 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 25 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 26 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 28 H 0.11 2.44 7.44 -51.93 -0.39 2.06 16 29 H 0.39 6.85 8.65 -40.82 -0.35 6.50 16 30 H 0.13 1.52 7.94 -52.49 -0.42 1.10 16 31 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 33 H 0.15 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 273.86 15.07 4.13 4.13 Total: -1.00 -31.28 273.86 -6.72 -38.00 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -3.90 Total: 7.63 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.88 Total: -4.82 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.42 Total: -46.85 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: 0.10 Total: -13.78 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.59 Total: 15.69 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -31.28 -6.72 -38.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.310 kcal (2) G-P(sol) polarization free energy of solvation -31.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds