Wall clock time and date at job start Mon Mar 30 2020 04:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 119.99896 * 2 1 4 4 H 1.48504 * 109.47431 * 264.83426 * 3 2 1 5 5 H 1.48497 * 109.47546 * 24.83492 * 3 2 1 6 6 H 1.48505 * 109.47355 * 144.83694 * 3 2 1 7 7 C 1.37877 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00371 * 4.91728 * 7 2 1 9 9 C 1.50701 * 119.99711 * 184.91447 * 7 2 1 10 10 H 1.08999 * 109.60685 * 335.48148 * 9 7 2 11 11 C 1.53341 * 109.73814 * 95.88908 * 9 7 2 12 12 C 1.53075 * 108.42410 * 52.30419 * 11 9 7 13 13 C 1.50174 * 109.89041 * 48.89946 * 12 11 9 14 14 O 1.21282 * 118.24422 * 162.43915 * 13 12 11 15 15 N 1.33345 * 123.51243 * 342.42037 * 13 12 11 16 16 C 1.45758 * 124.10587 * 2.22199 * 15 13 12 17 17 H 1.08998 * 109.13770 * 101.12871 * 16 15 13 18 18 C 1.50699 * 109.30205 * 220.61562 * 16 15 13 19 19 C 1.38220 * 119.61938 * 241.15481 * 18 16 15 20 20 C 1.38628 * 119.16421 * 180.02562 * 19 18 16 21 21 C 1.38671 * 118.42139 * 359.97438 * 20 19 18 22 22 C 1.38188 * 119.16302 * 359.97438 * 21 20 19 23 23 N 1.31860 * 119.61931 * 61.15329 * 18 16 15 24 24 H 0.96998 * 119.99812 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.67663 * 172.03551 * 11 9 7 26 26 H 1.09001 * 109.67583 * 292.53400 * 11 9 7 27 27 H 1.09006 * 109.40021 * 169.02827 * 12 11 9 28 28 H 1.08997 * 109.40137 * 288.77300 * 12 11 9 29 29 H 0.96997 * 117.95355 * 182.22365 * 15 13 12 30 30 H 1.07997 * 120.42020 * 0.02562 * 19 18 16 31 31 H 1.08004 * 120.79245 * 180.25292 * 20 19 18 32 32 H 1.08001 * 120.42306 * 180.02562 * 21 20 19 33 33 H 1.07994 * 119.62057 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6058 1.9835 -1.3944 5 1 1.3963 2.6817 0.5880 6 1 3.4879 1.4742 0.8063 7 6 2.0045 -1.1941 0.0005 8 1 1.4676 -2.1277 -0.0792 9 6 3.5074 -1.1964 0.1123 10 1 3.9022 -0.2455 -0.2455 11 6 3.9176 -1.4060 1.5749 12 6 3.2019 -2.6513 2.1044 13 6 3.3741 -3.7887 1.1390 14 8 3.1603 -4.9149 1.5350 15 7 3.7491 -3.6266 -0.1303 16 6 4.0825 -2.3388 -0.7260 17 1 5.1667 -2.2383 -0.7763 18 6 3.5109 -2.2712 -2.1187 19 6 4.3595 -2.1156 -3.1986 20 6 3.8236 -2.0540 -4.4756 21 6 2.4478 -2.1522 -4.6194 22 6 1.6624 -2.3077 -3.4931 23 7 2.2070 -2.3612 -2.2931 24 1 -0.4850 0.8400 -0.0004 25 1 4.9964 -1.5486 1.6367 26 1 3.6280 -0.5367 2.1655 27 1 3.6247 -2.9287 3.0700 28 1 2.1403 -2.4354 2.2239 29 1 3.8034 -4.4151 -0.6926 30 1 5.4267 -2.0429 -3.0495 31 1 4.4626 -1.9369 -5.3384 32 1 1.9959 -2.1086 -5.5994 33 1 0.5903 -2.3853 -3.5966 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709954500.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:27 Heat of formation + Delta-G solvation = -19.954658 kcal Electronic energy + Delta-G solvation = -18277.691953 eV Core-core repulsion = 15495.313691 eV Total energy + Delta-G solvation = -2782.378262 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.61362 -40.40345 -37.74482 -34.71927 -33.60903 -33.05833 -32.44352 -30.06904 -27.07091 -25.43557 -24.20358 -23.18094 -22.47702 -19.81869 -18.78634 -18.22254 -17.27463 -17.07187 -16.57159 -16.39420 -16.10346 -15.66586 -14.95156 -14.65191 -14.44119 -14.33475 -14.29132 -14.05810 -13.60578 -12.90666 -12.67779 -12.64219 -12.22617 -11.95289 -11.68971 -11.51598 -10.96736 -10.71355 -10.59357 -10.48044 -10.08040 -9.72614 -9.64812 -8.04119 -5.97937 0.31298 0.65268 1.37229 1.40105 1.47455 1.80109 2.46812 2.55236 3.14136 3.33970 3.52508 3.87365 3.99630 4.15033 4.23294 4.27666 4.40590 4.42329 4.48772 4.67499 4.82696 4.87492 4.99247 5.12413 5.17686 5.28527 5.35033 5.40831 5.49722 5.82267 5.96364 5.99839 6.51742 6.55501 7.10900 7.37082 7.50400 7.57667 9.12833 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.013644 C = 0.009021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.009562 B = 2051.620787 C = 3102.961238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.011 3.989 3 Si 0.915 3.085 4 H -0.283 1.283 5 H -0.304 1.304 6 H -0.232 1.232 7 C -0.440 4.440 8 H 0.048 0.952 9 C -0.009 4.009 10 H 0.053 0.947 11 C -0.110 4.110 12 C -0.115 4.115 13 C 0.533 3.467 14 O -0.623 6.623 15 N -0.687 5.687 16 C 0.200 3.800 17 H 0.113 0.887 18 C 0.096 3.904 19 C -0.165 4.165 20 C -0.085 4.085 21 C -0.172 4.172 22 C 0.061 3.939 23 N -0.452 5.452 24 H 0.253 0.747 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.081 0.919 29 H 0.391 0.609 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.156 0.844 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.967 -0.626 -7.687 15.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.183 4.183 3 Si 0.742 3.258 4 H -0.210 1.210 5 H -0.232 1.232 6 H -0.155 1.155 7 C -0.478 4.478 8 H 0.066 0.934 9 C -0.029 4.029 10 H 0.071 0.929 11 C -0.148 4.148 12 C -0.155 4.155 13 C 0.322 3.678 14 O -0.508 6.508 15 N -0.334 5.334 16 C 0.095 3.905 17 H 0.131 0.869 18 C -0.043 4.043 19 C -0.185 4.185 20 C -0.111 4.111 21 C -0.192 4.192 22 C -0.097 4.097 23 N -0.160 5.160 24 H 0.062 0.938 25 H 0.100 0.900 26 H 0.083 0.917 27 H 0.120 0.880 28 H 0.099 0.901 29 H 0.226 0.774 30 H 0.183 0.817 31 H 0.187 0.813 32 H 0.174 0.826 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 12.179 -0.959 -6.610 13.891 hybrid contribution -0.356 0.867 -1.045 1.403 sum 11.824 -0.092 -7.655 14.086 Atomic orbital electron populations 1.70071 1.08091 1.26506 1.54939 1.25643 0.94997 1.01484 0.96216 0.86235 0.80232 0.80841 0.78507 1.20964 1.23159 1.15491 1.20850 0.89872 0.93093 1.44020 0.93357 1.19651 0.95981 0.94305 0.92945 0.92878 1.21797 0.99232 0.96496 0.97238 1.21382 1.03366 0.93290 0.97420 1.20442 0.73628 0.90129 0.83607 1.90630 1.54659 1.27289 1.78189 1.45253 1.67344 1.10134 1.10657 1.20180 0.98223 0.83964 0.88149 0.86906 1.21514 0.89472 0.97370 0.95901 1.22310 1.02186 1.01225 0.92797 1.21892 0.95064 0.96057 0.98113 1.22411 0.95399 1.01028 1.00325 1.22994 1.00813 0.97325 0.88521 1.67812 1.13800 1.09183 1.25185 0.93797 0.90039 0.91742 0.87961 0.90118 0.77428 0.81733 0.81336 0.82649 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.52 13.96 21.45 0.30 -58.22 16 2 C 0.01 0.62 5.47 84.65 0.46 1.08 16 3 Si 0.92 41.76 26.99 68.60 1.85 43.61 16 4 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 5 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 6 H -0.23 -9.19 6.81 99.48 0.68 -8.51 16 7 C -0.44 -22.48 4.85 25.60 0.12 -22.35 16 8 H 0.05 2.91 7.13 -2.91 -0.02 2.89 16 9 C -0.01 -0.37 1.92 -11.45 -0.02 -0.39 16 10 H 0.05 2.06 5.28 -2.39 -0.01 2.05 16 11 C -0.11 -3.79 5.66 30.73 0.17 -3.62 16 12 C -0.12 -4.38 5.50 29.71 0.16 -4.22 16 13 C 0.53 22.05 7.27 87.71 0.64 22.68 16 14 O -0.62 -29.75 17.78 -3.04 -0.05 -29.80 16 15 N -0.69 -24.98 5.00 -450.23 -2.25 -27.23 16 16 C 0.20 6.69 3.12 44.36 0.14 6.83 16 17 H 0.11 2.78 7.85 -2.39 -0.02 2.76 16 18 C 0.10 3.35 5.50 42.55 0.23 3.59 16 19 C -0.17 -4.22 9.71 22.36 0.22 -4.01 16 20 C -0.09 -1.94 10.18 22.47 0.23 -1.71 16 21 C -0.17 -4.57 10.11 22.36 0.23 -4.35 16 22 C 0.06 2.21 11.18 84.67 0.95 3.16 16 23 N -0.45 -19.04 7.44 -183.89 -1.37 -20.41 16 24 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 25 H 0.08 2.21 8.13 -2.39 -0.02 2.19 16 26 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 28 H 0.08 3.61 7.44 -2.39 -0.02 3.60 16 29 H 0.39 13.53 8.65 -92.71 -0.80 12.73 16 30 H 0.17 2.87 7.94 -2.91 -0.02 2.85 16 31 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 33 H 0.14 4.93 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -73.01 273.86 2.31 -70.71 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 0.30 Total: 24.66 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 3.53 Total: -3.31 kcal Atomic # 7 Polarization: -102.54 SS G_CDS: -3.32 Total: -105.86 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.05 Total: -29.80 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.85 Total: 43.61 kcal Total: -73.01 2.31 -70.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954500.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.753 kcal (2) G-P(sol) polarization free energy of solvation -73.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds