Wall clock time and date at job start Mon Mar 30 2020 04:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99668 * 2 1 4 4 H 1.48507 * 109.46801 * 269.99622 * 3 2 1 5 5 H 1.48501 * 109.47471 * 29.99653 * 3 2 1 6 6 H 1.48492 * 109.47393 * 149.99795 * 3 2 1 7 7 C 1.37874 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00282 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99543 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.60632 * 60.32654 * 9 7 2 11 11 C 1.53344 * 109.60137 * 299.99744 * 9 7 2 12 12 C 1.53070 * 108.42534 * 307.61102 * 11 9 7 13 13 C 1.50168 * 109.89584 * 311.10257 * 12 11 9 14 14 O 1.21283 * 118.25154 * 197.60580 * 13 12 11 15 15 N 1.33354 * 123.50750 * 17.57658 * 13 12 11 16 16 C 1.45759 * 124.10773 * 357.78273 * 15 13 12 17 17 H 1.08995 * 109.29649 * 258.76156 * 16 15 13 18 18 C 1.50700 * 109.30091 * 139.38321 * 16 15 13 19 19 C 1.38225 * 119.62226 * 5.00163 * 18 16 15 20 20 C 1.38622 * 119.16133 * 179.97438 * 19 18 16 21 21 C 1.38671 * 118.42016 * 359.97438 * 20 19 18 22 22 C 1.38179 * 119.16434 * 0.02562 * 21 20 19 23 23 N 1.31857 * 119.61468 * 184.72398 * 18 16 15 24 24 H 0.96991 * 120.00025 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.67086 * 187.88014 * 11 9 7 26 26 H 1.08991 * 109.70550 * 67.36846 * 11 9 7 27 27 H 1.09007 * 109.39922 * 190.96855 * 12 11 9 28 28 H 1.09001 * 109.39908 * 71.23432 * 12 11 9 29 29 H 0.97004 * 117.94628 * 177.49432 * 15 13 12 30 30 H 1.08003 * 120.41423 * 359.95591 * 19 18 16 31 31 H 1.07997 * 120.78714 * 180.02562 * 20 19 18 32 32 H 1.08005 * 120.41396 * 180.02562 * 21 20 19 33 33 H 1.07998 * 119.61493 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8770 -0.6853 0.8933 11 6 4.0265 -0.4719 -1.2499 12 6 3.3544 -1.0920 -2.4774 13 6 3.4599 -2.5887 -2.4163 14 8 3.2791 -3.2191 -3.4365 15 7 3.7422 -3.2619 -1.3003 16 6 4.0282 -2.6331 -0.0167 17 1 5.1051 -2.6315 0.1515 18 6 3.3577 -3.4167 1.0822 19 6 2.7041 -4.5963 0.7792 20 6 2.0911 -5.3097 1.7975 21 6 2.1592 -4.8078 3.0885 22 6 2.8306 -3.6216 3.3153 23 7 3.4061 -2.9718 2.3225 24 1 -0.4850 0.8400 -0.0004 25 1 5.1074 -0.5914 -1.3238 26 1 3.7777 0.5876 -1.1913 27 1 3.8463 -0.7309 -3.3807 28 1 2.3035 -0.8036 -2.4991 29 1 3.7540 -4.2308 -1.3445 30 1 2.6712 -4.9575 -0.2381 31 1 1.5735 -6.2346 1.5905 32 1 1.6933 -5.3376 3.9063 33 1 2.8877 -3.2240 4.3177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709954504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:30 Heat of formation + Delta-G solvation = 7.655523 kcal Electronic energy + Delta-G solvation = -18265.971483 eV Core-core repulsion = 15484.790488 eV Total energy + Delta-G solvation = -2781.180995 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.36588 -39.04991 -36.25667 -33.43984 -32.15243 -31.82543 -30.73709 -28.57829 -25.44190 -23.97644 -23.30285 -21.83006 -20.94381 -18.24486 -17.39262 -16.57890 -15.93634 -15.66638 -15.42636 -14.82965 -14.43913 -14.35348 -14.02313 -13.23056 -13.01272 -12.80823 -12.67775 -12.62262 -12.45256 -11.42073 -11.21788 -10.78091 -10.53562 -10.37147 -10.04862 -9.71523 -9.45230 -9.23702 -9.13556 -8.86840 -8.63196 -8.59354 -8.31286 -6.12777 -4.11867 1.54536 1.71537 3.21512 3.32658 3.34520 3.36643 3.86390 4.23862 4.34773 4.71629 5.05887 5.16317 5.21597 5.36273 5.47273 5.56295 5.70626 5.74241 5.80520 5.97934 6.01412 6.06986 6.28323 6.46167 6.52827 6.57014 6.77394 6.86198 7.09634 7.14719 7.33895 7.63074 7.97229 8.40279 8.47956 8.87097 8.90405 9.47500 10.99934 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.011564 C = 0.008551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.416761 B = 2420.661859 C = 3273.523291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.297 1.297 6 H -0.263 1.263 7 C -0.504 4.504 8 H 0.074 0.926 9 C 0.011 3.989 10 H 0.059 0.941 11 C -0.129 4.129 12 C -0.119 4.119 13 C 0.546 3.454 14 O -0.582 6.582 15 N -0.707 5.707 16 C 0.205 3.795 17 H 0.077 0.923 18 C 0.163 3.837 19 C -0.175 4.175 20 C -0.073 4.073 21 C -0.191 4.191 22 C 0.106 3.894 23 N -0.464 5.464 24 H 0.264 0.736 25 H 0.049 0.951 26 H 0.059 0.941 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.387 0.613 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 -6.201 4.087 10.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.188 1.188 7 C -0.542 4.542 8 H 0.092 0.908 9 C -0.009 4.009 10 H 0.077 0.923 11 C -0.167 4.167 12 C -0.159 4.159 13 C 0.335 3.665 14 O -0.464 6.464 15 N -0.359 5.359 16 C 0.099 3.901 17 H 0.094 0.906 18 C 0.024 3.976 19 C -0.195 4.195 20 C -0.099 4.099 21 C -0.211 4.211 22 C -0.051 4.051 23 N -0.173 5.173 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.096 0.904 28 H 0.132 0.868 29 H 0.223 0.777 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 7.653 -5.373 3.744 10.072 hybrid contribution -0.435 -0.181 0.013 0.471 sum 7.218 -5.554 3.757 9.852 Atomic orbital electron populations 1.69890 1.06264 1.26954 1.50192 1.24937 0.94606 0.98772 0.94465 0.86976 0.80118 0.83944 0.78097 1.20355 1.22438 1.18818 1.20784 0.87728 0.94550 1.51095 0.90786 1.19528 0.98189 0.88478 0.94661 0.92308 1.22059 0.97952 1.00061 0.96595 1.21444 1.05154 0.90589 0.98679 1.20099 0.73320 0.91209 0.81849 1.90660 1.52264 1.69949 1.33480 1.45512 1.71425 1.09725 1.09253 1.19643 0.96829 0.94460 0.79184 0.90582 1.21133 0.93514 0.90730 0.92210 1.21792 1.00605 0.97029 1.00097 1.21420 0.96491 0.99144 0.92820 1.21985 1.02640 0.98843 0.97583 1.22628 0.93160 0.91346 0.98002 1.67297 1.19050 1.31280 0.99655 0.92610 0.93218 0.92311 0.90350 0.86814 0.77657 0.85408 0.85507 0.85527 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.38 13.96 55.43 0.77 -25.61 16 2 C 0.07 2.02 5.26 -17.82 -0.09 1.93 16 3 Si 0.88 20.71 24.30 -169.99 -4.13 16.58 16 4 H -0.28 -6.29 6.94 56.52 0.39 -5.90 16 5 H -0.30 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.26 -5.89 6.53 56.52 0.37 -5.52 16 7 C -0.50 -12.95 6.76 -34.44 -0.23 -13.18 16 8 H 0.07 2.14 7.28 -52.49 -0.38 1.76 16 9 C 0.01 0.23 1.61 -91.63 -0.15 0.08 16 10 H 0.06 1.32 7.23 -51.93 -0.38 0.94 16 11 C -0.13 -2.54 5.02 -26.52 -0.13 -2.67 16 12 C -0.12 -2.40 5.50 -28.10 -0.15 -2.55 16 13 C 0.55 11.29 7.45 -11.87 -0.09 11.20 16 14 O -0.58 -13.45 17.78 5.55 0.10 -13.35 16 15 N -0.71 -12.90 4.55 -55.99 -0.25 -13.16 16 16 C 0.20 3.78 3.24 -69.52 -0.23 3.55 16 17 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 18 C 0.16 3.01 4.72 -82.59 -0.39 2.62 16 19 C -0.18 -2.92 9.22 -39.44 -0.36 -3.28 16 20 C -0.07 -1.06 10.18 -39.28 -0.40 -1.46 16 21 C -0.19 -2.67 10.11 -39.44 -0.40 -3.07 16 22 C 0.11 1.68 11.18 -17.55 -0.20 1.48 16 23 N -0.46 -8.71 10.00 -9.48 -0.09 -8.81 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 26 H 0.06 1.21 3.55 -51.93 -0.18 1.02 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 28 H 0.11 2.58 7.28 -51.93 -0.38 2.20 16 29 H 0.39 6.28 6.59 -40.82 -0.27 6.02 16 30 H 0.13 1.97 5.97 -52.48 -0.31 1.66 16 31 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 32 H 0.13 1.36 8.06 -52.48 -0.42 0.94 16 33 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 266.22 15.07 4.01 4.01 Total: -1.00 -31.57 266.22 -6.04 -37.60 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.62 Total: 8.08 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.82 Total: -5.35 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: 0.42 Total: -47.57 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: 0.10 Total: -13.35 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.13 Total: 16.58 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.57 -6.04 -37.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.260 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds