Wall clock time and date at job start Mon Mar 30 2020 04:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99668 * 2 1 4 4 H 1.48507 * 109.46801 * 269.99622 * 3 2 1 5 5 H 1.48501 * 109.47471 * 29.99653 * 3 2 1 6 6 H 1.48492 * 109.47393 * 149.99795 * 3 2 1 7 7 C 1.37874 * 120.00059 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00282 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99543 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.60632 * 60.32654 * 9 7 2 11 11 C 1.53344 * 109.60137 * 299.99744 * 9 7 2 12 12 C 1.53070 * 108.42534 * 307.61102 * 11 9 7 13 13 C 1.50168 * 109.89584 * 311.10257 * 12 11 9 14 14 O 1.21283 * 118.25154 * 197.60580 * 13 12 11 15 15 N 1.33354 * 123.50750 * 17.57658 * 13 12 11 16 16 C 1.45759 * 124.10773 * 357.78273 * 15 13 12 17 17 H 1.08995 * 109.29649 * 258.76156 * 16 15 13 18 18 C 1.50700 * 109.30091 * 139.38321 * 16 15 13 19 19 C 1.38225 * 119.62226 * 5.00163 * 18 16 15 20 20 C 1.38622 * 119.16133 * 179.97438 * 19 18 16 21 21 C 1.38671 * 118.42016 * 359.97438 * 20 19 18 22 22 C 1.38179 * 119.16434 * 0.02562 * 21 20 19 23 23 N 1.31857 * 119.61468 * 184.72398 * 18 16 15 24 24 H 0.96991 * 120.00025 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.67086 * 187.88014 * 11 9 7 26 26 H 1.08991 * 109.70550 * 67.36846 * 11 9 7 27 27 H 1.09007 * 109.39922 * 190.96855 * 12 11 9 28 28 H 1.09001 * 109.39908 * 71.23432 * 12 11 9 29 29 H 0.97004 * 117.94628 * 177.49432 * 15 13 12 30 30 H 1.08003 * 120.41423 * 359.95591 * 19 18 16 31 31 H 1.07997 * 120.78714 * 180.02562 * 20 19 18 32 32 H 1.08005 * 120.41396 * 180.02562 * 21 20 19 33 33 H 1.07998 * 119.61493 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0005 9 6 3.5116 -1.1939 0.0011 10 1 3.8770 -0.6853 0.8933 11 6 4.0265 -0.4719 -1.2499 12 6 3.3544 -1.0920 -2.4774 13 6 3.4599 -2.5887 -2.4163 14 8 3.2791 -3.2191 -3.4365 15 7 3.7422 -3.2619 -1.3003 16 6 4.0282 -2.6331 -0.0167 17 1 5.1051 -2.6315 0.1515 18 6 3.3577 -3.4167 1.0822 19 6 2.7041 -4.5963 0.7792 20 6 2.0911 -5.3097 1.7975 21 6 2.1592 -4.8078 3.0885 22 6 2.8306 -3.6216 3.3153 23 7 3.4061 -2.9718 2.3225 24 1 -0.4850 0.8400 -0.0004 25 1 5.1074 -0.5914 -1.3238 26 1 3.7777 0.5876 -1.1913 27 1 3.8463 -0.7309 -3.3807 28 1 2.3035 -0.8036 -2.4991 29 1 3.7540 -4.2308 -1.3445 30 1 2.6712 -4.9575 -0.2381 31 1 1.5735 -6.2346 1.5905 32 1 1.6933 -5.3376 3.9063 33 1 2.8877 -3.2240 4.3177 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709954504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:30 Heat of formation + Delta-G solvation = -15.316289 kcal Electronic energy + Delta-G solvation = -18266.967615 eV Core-core repulsion = 15484.790488 eV Total energy + Delta-G solvation = -2782.177127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.81338 -40.47689 -37.90214 -35.12721 -33.67965 -33.39905 -32.16566 -30.14334 -27.17490 -25.61280 -24.59980 -23.24453 -22.46775 -19.98666 -18.92717 -18.19722 -17.40495 -17.19138 -16.81787 -16.41379 -16.09151 -15.81839 -15.54023 -14.76682 -14.70653 -14.44046 -14.19711 -14.08122 -13.83553 -12.99897 -12.70117 -12.44066 -12.31159 -12.07334 -11.69261 -11.54378 -11.08922 -10.81350 -10.68642 -10.59179 -10.29618 -10.02244 -9.66619 -8.21458 -6.22435 0.30913 0.50851 1.34852 1.41914 1.49921 1.71310 2.37057 2.38582 2.97319 3.16948 3.40185 3.75644 3.91990 4.07197 4.16334 4.18913 4.26587 4.34262 4.36771 4.59649 4.72803 4.77444 4.87649 4.96242 5.16026 5.19130 5.28953 5.34519 5.43860 5.70718 5.86352 5.90469 6.32366 6.40387 6.80647 7.19580 7.30386 7.40122 8.95074 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018757 B = 0.011564 C = 0.008551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.416761 B = 2420.661859 C = 3273.523291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.016 3.984 3 Si 0.933 3.067 4 H -0.262 1.262 5 H -0.310 1.310 6 H -0.239 1.239 7 C -0.481 4.481 8 H 0.031 0.969 9 C 0.008 3.992 10 H 0.056 0.944 11 C -0.126 4.126 12 C -0.119 4.119 13 C 0.541 3.459 14 O -0.612 6.612 15 N -0.695 5.695 16 C 0.207 3.793 17 H 0.106 0.894 18 C 0.135 3.865 19 C -0.191 4.191 20 C -0.077 4.077 21 C -0.182 4.182 22 C 0.088 3.912 23 N -0.495 5.495 24 H 0.261 0.739 25 H 0.089 0.911 26 H 0.054 0.946 27 H 0.105 0.895 28 H 0.082 0.918 29 H 0.397 0.603 30 H 0.132 0.868 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.326 -6.623 4.848 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.181 4.181 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.239 1.239 6 H -0.163 1.163 7 C -0.519 4.519 8 H 0.049 0.951 9 C -0.012 4.012 10 H 0.074 0.926 11 C -0.163 4.163 12 C -0.158 4.158 13 C 0.331 3.669 14 O -0.495 6.495 15 N -0.346 5.346 16 C 0.101 3.899 17 H 0.124 0.876 18 C -0.003 4.003 19 C -0.212 4.212 20 C -0.103 4.103 21 C -0.201 4.201 22 C -0.069 4.069 23 N -0.204 5.204 24 H 0.070 0.930 25 H 0.108 0.892 26 H 0.072 0.928 27 H 0.123 0.877 28 H 0.100 0.900 29 H 0.235 0.765 30 H 0.150 0.850 31 H 0.176 0.824 32 H 0.182 0.818 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.555 -5.819 4.524 12.068 hybrid contribution -1.066 -0.203 -0.123 1.093 sum 8.489 -6.023 4.401 11.301 Atomic orbital electron populations 1.70054 1.08290 1.27527 1.53394 1.25711 0.95127 1.02474 0.94754 0.86090 0.79559 0.79371 0.78926 1.18798 1.23856 1.16258 1.20875 0.90052 0.92443 1.48506 0.95087 1.19466 0.95137 0.91041 0.95530 0.92600 1.22023 1.00264 0.99171 0.94875 1.21420 1.03596 0.90390 1.00427 1.20227 0.73201 0.91508 0.81988 1.90644 1.53801 1.70487 1.34591 1.45399 1.70185 1.10322 1.08711 1.19652 0.98399 0.92687 0.79146 0.87648 1.21174 0.95020 0.91748 0.92388 1.21973 1.01017 0.97127 1.01040 1.21872 0.95773 1.00003 0.92637 1.22416 1.01157 0.98074 0.98484 1.23201 0.93033 0.92082 0.98561 1.67242 1.20440 1.32516 1.00236 0.93037 0.89209 0.92791 0.87668 0.89983 0.76467 0.85043 0.82412 0.81775 0.80713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.08 13.96 21.45 0.30 -57.78 16 2 C 0.02 0.87 5.26 84.65 0.45 1.32 16 3 Si 0.93 42.37 24.30 68.60 1.67 44.04 16 4 H -0.26 -11.20 6.94 99.48 0.69 -10.51 16 5 H -0.31 -14.66 7.11 99.48 0.71 -13.96 16 6 H -0.24 -9.82 6.53 99.48 0.65 -9.17 16 7 C -0.48 -24.98 6.76 25.60 0.17 -24.80 16 8 H 0.03 1.85 7.28 -2.91 -0.02 1.83 16 9 C 0.01 0.32 1.61 -11.45 -0.02 0.30 16 10 H 0.06 2.38 7.23 -2.39 -0.02 2.37 16 11 C -0.13 -4.61 5.02 30.73 0.15 -4.46 16 12 C -0.12 -4.62 5.50 29.70 0.16 -4.46 16 13 C 0.54 21.91 7.45 87.71 0.65 22.56 16 14 O -0.61 -27.97 17.78 -3.04 -0.05 -28.02 16 15 N -0.69 -24.55 4.55 -450.22 -2.05 -26.60 16 16 C 0.21 7.29 3.24 44.36 0.14 7.44 16 17 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 18 C 0.13 4.87 4.72 42.55 0.20 5.07 16 19 C -0.19 -6.20 9.22 22.36 0.21 -6.00 16 20 C -0.08 -2.08 10.18 22.47 0.23 -1.86 16 21 C -0.18 -4.62 10.11 22.36 0.23 -4.39 16 22 C 0.09 2.63 11.18 84.67 0.95 3.58 16 23 N -0.49 -18.06 10.00 -183.90 -1.84 -19.89 16 24 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 25 H 0.09 2.62 8.13 -2.39 -0.02 2.60 16 26 H 0.05 2.05 3.55 -2.39 -0.01 2.04 16 27 H 0.11 3.49 8.14 -2.38 -0.02 3.47 16 28 H 0.08 3.75 7.28 -2.39 -0.02 3.73 16 29 H 0.40 12.51 6.59 -92.71 -0.61 11.90 16 30 H 0.13 3.99 5.97 -2.91 -0.02 3.98 16 31 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 33 H 0.18 4.06 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -70.15 266.22 2.00 -68.15 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: 0.46 Total: 25.81 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 3.52 Total: -5.70 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -3.59 Total: -104.27 kcal Atomic # 8 Polarization: -27.97 SS G_CDS: -0.05 Total: -28.02 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.67 Total: 44.04 kcal Total: -70.15 2.00 -68.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.833 kcal (2) G-P(sol) polarization free energy of solvation -70.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds