Wall clock time and date at job start Mon Mar 30 2020 04:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99839 * 2 1 4 4 H 1.48494 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46969 * 299.99388 * 3 2 1 6 6 H 1.48497 * 109.47225 * 59.99360 * 3 2 1 7 7 C 1.37881 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99919 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.60443 * 60.32183 * 9 7 2 11 11 C 1.53345 * 109.60413 * 299.99826 * 9 7 2 12 12 C 1.53069 * 108.45474 * 172.69392 * 11 9 7 13 13 C 1.50262 * 109.84963 * 48.87417 * 12 11 9 14 14 O 1.21284 * 118.22955 * 162.42243 * 13 12 11 15 15 N 1.33351 * 123.52487 * 342.47366 * 13 12 11 16 16 C 1.45748 * 124.10650 * 2.17524 * 15 13 12 17 17 H 1.09000 * 109.14082 * 101.14730 * 16 15 13 18 18 C 1.50700 * 109.29943 * 220.63607 * 16 15 13 19 19 C 1.38235 * 119.61573 * 245.76259 * 18 16 15 20 20 C 1.38625 * 119.15991 * 179.75625 * 19 18 16 21 21 C 1.38673 * 118.42046 * 0.50459 * 20 19 18 22 22 C 1.38184 * 119.16304 * 359.73165 * 21 20 19 23 23 N 1.31849 * 119.62349 * 66.03087 * 18 16 15 24 24 H 0.97000 * 120.00240 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.67371 * 292.44856 * 11 9 7 26 26 H 1.09004 * 109.67368 * 52.94603 * 11 9 7 27 27 H 1.08995 * 109.40188 * 169.04476 * 12 11 9 28 28 H 1.08994 * 109.40577 * 288.79250 * 12 11 9 29 29 H 0.96998 * 117.94656 * 182.19081 * 15 13 12 30 30 H 1.07995 * 120.41737 * 359.97438 * 19 18 16 31 31 H 1.08000 * 120.79227 * 180.26438 * 20 19 18 32 32 H 1.07997 * 120.41989 * 179.76195 * 21 20 19 33 33 H 1.07996 * 119.61507 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6283 -2.5619 -0.8918 11 6 0.3679 -2.5833 1.2513 12 6 -0.5186 -3.8258 1.1357 13 6 0.3183 -5.0169 0.7635 14 8 -0.1458 -6.1229 0.9434 15 7 1.5442 -4.9233 0.2471 16 6 2.2420 -3.6637 0.0216 17 1 2.9647 -3.5072 0.8224 18 6 2.9666 -3.7250 -1.2984 19 6 4.3484 -3.6946 -1.3212 20 6 5.0053 -3.7567 -2.5403 21 6 4.2443 -3.8368 -3.6968 22 6 2.8663 -3.8575 -3.5960 23 7 2.2751 -3.8017 -2.4184 24 1 -0.4850 0.8400 -0.0004 25 1 0.9954 -2.6615 2.1391 26 1 -0.2563 -1.6923 1.3204 27 1 -1.0089 -4.0109 2.0914 28 1 -1.2748 -3.6610 0.3682 29 1 2.0000 -5.7449 0.0061 30 1 4.9091 -3.6269 -0.4007 31 1 6.0841 -3.7392 -2.5886 32 1 4.7225 -3.8828 -4.6640 33 1 2.2665 -3.9193 -4.4920 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709954505.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:33 Heat of formation + Delta-G solvation = -11.081909 kcal Electronic energy + Delta-G solvation = -17895.672137 eV Core-core repulsion = 15113.678627 eV Total energy + Delta-G solvation = -2781.993511 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.19207 -39.04500 -36.06481 -33.28462 -32.09309 -31.70241 -30.96090 -28.52472 -25.19990 -23.62885 -23.16166 -21.73830 -21.08016 -18.17088 -17.16959 -16.70696 -15.88031 -15.64893 -15.40722 -14.85169 -14.51596 -14.25173 -13.41349 -13.24610 -13.05899 -12.93201 -12.66628 -12.41802 -11.59715 -11.24502 -11.05798 -10.93713 -10.68229 -10.56568 -9.88888 -9.86340 -9.50209 -9.19157 -9.05842 -8.78097 -8.64982 -8.49235 -8.30359 -6.10738 -4.17566 1.43497 1.63457 3.22742 3.31684 3.33274 3.33924 3.89377 4.30127 4.38728 4.69154 5.02529 5.10044 5.21944 5.34556 5.43528 5.56490 5.82984 5.89726 6.00104 6.07528 6.18276 6.26010 6.43384 6.45388 6.54158 6.97499 6.98801 7.11156 7.39282 7.60341 7.83121 7.87534 7.99984 8.27195 8.46074 8.82728 8.89448 9.47207 10.95405 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.011710 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.918878 B = 2390.448430 C = 3861.014099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.511 4.511 8 H 0.057 0.943 9 C 0.050 3.950 10 H 0.053 0.947 11 C -0.119 4.119 12 C -0.134 4.134 13 C 0.529 3.471 14 O -0.587 6.587 15 N -0.706 5.706 16 C 0.191 3.809 17 H 0.080 0.920 18 C 0.150 3.850 19 C -0.164 4.164 20 C -0.080 4.080 21 C -0.186 4.186 22 C 0.098 3.902 23 N -0.457 5.457 24 H 0.262 0.738 25 H 0.040 0.960 26 H 0.108 0.892 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.385 0.615 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.127 0.873 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.629 -4.761 -3.323 9.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.550 4.550 8 H 0.075 0.925 9 C 0.031 3.969 10 H 0.071 0.929 11 C -0.157 4.157 12 C -0.174 4.174 13 C 0.318 3.682 14 O -0.468 6.468 15 N -0.355 5.355 16 C 0.086 3.914 17 H 0.097 0.903 18 C 0.011 3.989 19 C -0.184 4.184 20 C -0.106 4.106 21 C -0.206 4.206 22 C -0.059 4.059 23 N -0.166 5.166 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.126 0.874 27 H 0.100 0.900 28 H 0.111 0.889 29 H 0.218 0.782 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.145 0.855 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.199 -4.987 -3.110 8.542 hybrid contribution 1.757 0.854 -0.373 1.988 sum 7.956 -4.133 -3.483 9.618 Atomic orbital electron populations 1.69858 1.05821 1.26574 1.49952 1.24886 0.94828 0.98988 0.94842 0.86555 0.80098 0.83834 0.77657 1.19824 1.21059 1.20903 1.20966 0.92750 0.89908 1.51337 0.92525 1.19000 0.92246 0.89849 0.95816 0.92945 1.21845 0.98527 0.96750 0.98589 1.21722 0.98932 0.94104 1.02622 1.20494 0.81214 0.91177 0.75311 1.90650 1.70818 1.28728 1.56646 1.45573 1.16984 1.09339 1.63558 1.20295 0.95420 0.85509 0.90221 0.90257 1.21412 0.90369 0.92691 0.94420 1.21968 0.95433 1.02130 0.98915 1.21458 1.00054 0.96640 0.92480 1.22037 0.95705 1.03756 0.99081 1.22732 0.92212 0.95279 0.95721 1.67481 1.40934 1.10195 0.97954 0.92824 0.94098 0.87373 0.90017 0.88931 0.78184 0.85038 0.85394 0.85474 0.83305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.72 11.31 55.43 0.63 -23.09 16 2 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 3 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.51 -12.83 8.13 -34.44 -0.28 -13.11 16 8 H 0.06 1.40 7.72 -52.49 -0.41 1.00 16 9 C 0.05 1.15 1.56 -91.63 -0.14 1.01 16 10 H 0.05 1.38 7.68 -51.93 -0.40 0.98 16 11 C -0.12 -2.61 5.17 -26.52 -0.14 -2.75 16 12 C -0.13 -2.69 6.04 -28.06 -0.17 -2.86 16 13 C 0.53 11.02 7.72 -11.83 -0.09 10.92 16 14 O -0.59 -13.59 17.78 5.55 0.10 -13.49 16 15 N -0.71 -13.36 5.11 -55.96 -0.29 -13.65 16 16 C 0.19 3.71 2.78 -69.53 -0.19 3.51 16 17 H 0.08 1.46 7.83 -51.93 -0.41 1.05 16 18 C 0.15 2.76 5.20 -82.59 -0.43 2.33 16 19 C -0.16 -2.53 9.71 -39.44 -0.38 -2.91 16 20 C -0.08 -1.06 10.18 -39.28 -0.40 -1.46 16 21 C -0.19 -2.44 10.11 -39.44 -0.40 -2.84 16 22 C 0.10 1.53 11.18 -17.55 -0.20 1.33 16 23 N -0.46 -8.77 9.71 -9.47 -0.09 -8.86 16 24 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.04 0.86 8.13 -51.93 -0.42 0.44 16 26 H 0.11 2.64 5.95 -51.93 -0.31 2.33 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 29 H 0.38 6.69 8.65 -40.82 -0.35 6.33 16 30 H 0.13 1.75 7.94 -52.49 -0.42 1.33 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.15 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 280.51 15.07 4.23 4.23 Total: -1.00 -29.83 280.51 -7.32 -37.15 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.96 Total: 7.67 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.92 Total: -5.19 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.25 Total: -45.61 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.10 Total: -13.49 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.83 -7.32 -37.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954505.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.070 kcal (2) G-P(sol) polarization free energy of solvation -29.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds