Wall clock time and date at job start Mon Mar 30 2020 04:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99839 * 2 1 4 4 H 1.48494 * 109.46978 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46969 * 299.99388 * 3 2 1 6 6 H 1.48497 * 109.47225 * 59.99360 * 3 2 1 7 7 C 1.37881 * 120.00026 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99677 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99919 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.60443 * 60.32183 * 9 7 2 11 11 C 1.53345 * 109.60413 * 299.99826 * 9 7 2 12 12 C 1.53069 * 108.45474 * 172.69392 * 11 9 7 13 13 C 1.50262 * 109.84963 * 48.87417 * 12 11 9 14 14 O 1.21284 * 118.22955 * 162.42243 * 13 12 11 15 15 N 1.33351 * 123.52487 * 342.47366 * 13 12 11 16 16 C 1.45748 * 124.10650 * 2.17524 * 15 13 12 17 17 H 1.09000 * 109.14082 * 101.14730 * 16 15 13 18 18 C 1.50700 * 109.29943 * 220.63607 * 16 15 13 19 19 C 1.38235 * 119.61573 * 245.76259 * 18 16 15 20 20 C 1.38625 * 119.15991 * 179.75625 * 19 18 16 21 21 C 1.38673 * 118.42046 * 0.50459 * 20 19 18 22 22 C 1.38184 * 119.16304 * 359.73165 * 21 20 19 23 23 N 1.31849 * 119.62349 * 66.03087 * 18 16 15 24 24 H 0.97000 * 120.00240 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.67371 * 292.44856 * 11 9 7 26 26 H 1.09004 * 109.67368 * 52.94603 * 11 9 7 27 27 H 1.08995 * 109.40188 * 169.04476 * 12 11 9 28 28 H 1.08994 * 109.40577 * 288.79250 * 12 11 9 29 29 H 0.96998 * 117.94656 * 182.19081 * 15 13 12 30 30 H 1.07995 * 120.41737 * 359.97438 * 19 18 16 31 31 H 1.08000 * 120.79227 * 180.26438 * 20 19 18 32 32 H 1.07997 * 120.41989 * 179.76195 * 21 20 19 33 33 H 1.07996 * 119.61507 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6283 -2.5619 -0.8918 11 6 0.3679 -2.5833 1.2513 12 6 -0.5186 -3.8258 1.1357 13 6 0.3183 -5.0169 0.7635 14 8 -0.1458 -6.1229 0.9434 15 7 1.5442 -4.9233 0.2471 16 6 2.2420 -3.6637 0.0216 17 1 2.9647 -3.5072 0.8224 18 6 2.9666 -3.7250 -1.2984 19 6 4.3484 -3.6946 -1.3212 20 6 5.0053 -3.7567 -2.5403 21 6 4.2443 -3.8368 -3.6968 22 6 2.8663 -3.8575 -3.5960 23 7 2.2751 -3.8017 -2.4184 24 1 -0.4850 0.8400 -0.0004 25 1 0.9954 -2.6615 2.1391 26 1 -0.2563 -1.6923 1.3204 27 1 -1.0089 -4.0109 2.0914 28 1 -1.2748 -3.6610 0.3682 29 1 2.0000 -5.7449 0.0061 30 1 4.9091 -3.6269 -0.4007 31 1 6.0841 -3.7392 -2.5886 32 1 4.7225 -3.8828 -4.6640 33 1 2.2665 -3.9193 -4.4920 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709954505.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:33 Heat of formation + Delta-G solvation = -30.759500 kcal Electronic energy + Delta-G solvation = -17896.525422 eV Core-core repulsion = 15113.678627 eV Total energy + Delta-G solvation = -2782.846795 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.60979 -40.50420 -37.74261 -35.06873 -33.43316 -33.18260 -32.45587 -30.14096 -26.88448 -25.28888 -24.34956 -23.29314 -22.58172 -19.88205 -18.84105 -18.08512 -17.50200 -17.07212 -16.69841 -16.43788 -16.26469 -15.75014 -14.95473 -14.72427 -14.48981 -14.46029 -14.20394 -13.74727 -13.12452 -12.87946 -12.75907 -12.68847 -12.43522 -12.30132 -11.65358 -11.61814 -10.92441 -10.77300 -10.67558 -10.43573 -10.15392 -10.00881 -9.77136 -8.06938 -6.18838 0.26145 0.52459 1.42393 1.45987 1.54673 1.65971 2.37285 2.50554 3.05757 3.23469 3.43646 3.79062 3.95717 4.11478 4.26215 4.36006 4.37558 4.40291 4.50873 4.64240 4.81031 4.85722 4.94449 5.18980 5.29184 5.33529 5.35256 5.63240 5.82925 5.91224 5.96066 6.04382 6.23294 6.46165 6.89199 7.23369 7.27950 7.48399 8.98644 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.014634 B = 0.011710 C = 0.007250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.918878 B = 2390.448430 C = 3861.014099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.019 3.981 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.514 4.514 8 H 0.059 0.941 9 C 0.053 3.947 10 H 0.012 0.988 11 C -0.112 4.112 12 C -0.127 4.127 13 C 0.528 3.472 14 O -0.612 6.612 15 N -0.693 5.693 16 C 0.197 3.803 17 H 0.093 0.907 18 C 0.117 3.883 19 C -0.169 4.169 20 C -0.076 4.076 21 C -0.171 4.171 22 C 0.076 3.924 23 N -0.502 5.502 24 H 0.260 0.740 25 H 0.049 0.951 26 H 0.082 0.918 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.394 0.606 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.167 0.833 33 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.189 -4.845 -3.901 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.553 4.553 8 H 0.077 0.923 9 C 0.034 3.966 10 H 0.030 0.970 11 C -0.151 4.151 12 C -0.167 4.167 13 C 0.317 3.683 14 O -0.496 6.496 15 N -0.341 5.341 16 C 0.092 3.908 17 H 0.110 0.890 18 C -0.021 4.021 19 C -0.189 4.189 20 C -0.102 4.102 21 C -0.191 4.191 22 C -0.082 4.082 23 N -0.212 5.212 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.229 0.771 30 H 0.169 0.831 31 H 0.186 0.814 32 H 0.184 0.816 33 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.792 -5.073 -3.692 10.801 hybrid contribution 1.006 0.865 -0.297 1.360 sum 9.799 -4.208 -3.989 11.385 Atomic orbital electron populations 1.69991 1.07055 1.27012 1.51141 1.25590 0.95508 1.01951 0.94976 0.85661 0.79395 0.80301 0.77241 1.18822 1.21605 1.20666 1.21241 0.92960 0.90788 1.50298 0.92270 1.18797 0.92541 0.90944 0.94297 0.97014 1.21677 0.98398 0.96480 0.98503 1.21643 0.98479 0.93049 1.03493 1.20531 0.81693 0.90806 0.75310 1.90636 1.71504 1.29421 1.58047 1.45461 1.16410 1.09870 1.62407 1.20142 0.94571 0.84004 0.92095 0.88955 1.21265 0.91654 0.95600 0.93543 1.22223 0.94266 1.01456 1.00955 1.21958 1.02068 0.94777 0.91398 1.22466 0.94606 1.00972 1.01016 1.23170 0.94043 0.95750 0.95199 1.67351 1.42774 1.11776 0.99299 0.93062 0.93273 0.89922 0.88012 0.89598 0.77116 0.83134 0.81373 0.81564 0.81711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.11 11.31 21.45 0.24 -49.87 16 2 C 0.02 0.98 5.29 84.66 0.45 1.43 16 3 Si 0.95 41.42 29.54 68.60 2.03 43.45 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.51 -25.88 8.13 25.60 0.21 -25.67 16 8 H 0.06 2.88 7.72 -2.91 -0.02 2.86 16 9 C 0.05 2.50 1.56 -11.45 -0.02 2.48 16 10 H 0.01 0.64 7.68 -2.39 -0.02 0.63 16 11 C -0.11 -5.01 5.17 30.73 0.16 -4.86 16 12 C -0.13 -5.15 6.04 29.73 0.18 -4.97 16 13 C 0.53 22.00 7.72 87.74 0.68 22.68 16 14 O -0.61 -28.30 17.78 -3.04 -0.05 -28.35 16 15 N -0.69 -26.12 5.11 -450.14 -2.30 -28.42 16 16 C 0.20 7.59 2.78 44.36 0.12 7.71 16 17 H 0.09 3.29 7.83 -2.39 -0.02 3.27 16 18 C 0.12 4.23 5.20 42.56 0.22 4.45 16 19 C -0.17 -4.78 9.71 22.36 0.22 -4.56 16 20 C -0.08 -1.71 10.18 22.47 0.23 -1.48 16 21 C -0.17 -3.88 10.11 22.36 0.23 -3.66 16 22 C 0.08 2.25 11.18 84.67 0.95 3.20 16 23 N -0.50 -19.23 9.71 -183.89 -1.79 -21.02 16 24 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 25 H 0.05 2.06 8.13 -2.39 -0.02 2.04 16 26 H 0.08 4.15 5.95 -2.38 -0.01 4.14 16 27 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 28 H 0.09 3.59 8.14 -2.39 -0.02 3.57 16 29 H 0.39 13.50 8.65 -92.71 -0.80 12.70 16 30 H 0.15 3.54 7.94 -2.91 -0.02 3.51 16 31 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 32 H 0.17 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.17 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -65.18 280.51 2.07 -63.11 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.32 Total: 24.35 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 3.62 Total: -3.25 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -3.85 Total: -99.31 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.05 Total: -28.35 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -65.18 2.07 -63.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709954505.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.350 kcal (2) G-P(sol) polarization free energy of solvation -65.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds