Wall clock time and date at job start Mon Mar 30 2020 04:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99754 * 2 1 4 4 H 1.48498 * 109.47176 * 270.00015 * 3 2 1 5 5 H 1.48501 * 109.47217 * 29.99829 * 3 2 1 6 6 H 1.48499 * 109.47204 * 149.99796 * 3 2 1 7 7 C 1.37872 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00231 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99980 * 180.02562 * 7 2 1 10 10 H 1.09007 * 109.73539 * 54.09643 * 9 7 2 11 11 C 1.53350 * 109.60512 * 293.69157 * 9 7 2 12 12 C 1.53074 * 108.42175 * 307.77226 * 11 9 7 13 13 C 1.50175 * 109.89241 * 311.10327 * 12 11 9 14 14 O 1.21287 * 118.24507 * 197.60688 * 13 12 11 15 15 N 1.32955 * 123.39581 * 17.52223 * 13 12 11 16 16 C 1.45749 * 124.41256 * 357.88824 * 15 13 12 17 17 H 1.09008 * 109.29983 * 258.75528 * 16 15 13 18 18 C 1.50695 * 109.30704 * 139.16900 * 16 15 13 19 19 C 1.38679 * 120.41424 * 327.69136 * 18 16 15 20 20 C 1.38628 * 118.41734 * 180.02562 * 19 18 16 21 21 C 1.38225 * 119.16447 * 359.97438 * 20 19 18 22 22 N 1.31857 * 120.76195 * 0.02562 * 21 20 19 23 23 C 1.31882 * 121.72360 * 359.69781 * 22 21 20 24 24 H 0.96996 * 120.00481 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.67403 * 67.50295 * 11 9 7 26 26 H 1.09000 * 109.67431 * 188.04140 * 11 9 7 27 27 H 1.09008 * 109.39909 * 71.22895 * 12 11 9 28 28 H 1.08998 * 109.40104 * 190.96666 * 12 11 9 29 29 H 0.97001 * 117.64383 * 177.87554 * 15 13 12 30 30 H 1.07998 * 120.79143 * 0.02562 * 19 18 16 31 31 H 1.08001 * 120.41502 * 180.02562 * 20 19 18 32 32 H 1.08000 * 119.61940 * 179.97438 * 21 20 19 33 33 H 1.08007 * 119.61280 * 180.30952 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 1 3.8793 -0.5920 0.8322 11 6 4.0266 -0.6137 -1.3217 12 6 3.3514 -1.3622 -2.4736 13 6 3.4534 -2.8437 -2.2498 14 8 3.2698 -3.5810 -3.1952 15 7 3.7358 -3.3878 -1.0701 16 6 4.0246 -2.6279 0.1396 17 1 5.1019 -2.6106 0.3056 18 6 3.3500 -3.2868 1.3150 19 6 2.1437 -3.9508 1.1505 20 6 1.5593 -4.5418 2.2599 21 6 2.1940 -4.4507 3.4845 22 7 3.3409 -3.8111 3.6037 23 6 3.9282 -3.2418 2.5692 24 1 -0.4850 0.8400 -0.0004 25 1 3.7798 0.4464 -1.3782 26 1 5.1071 -0.7433 -1.3832 27 1 2.3010 -1.0753 -2.5255 28 1 3.8429 -1.1029 -3.4113 29 1 3.7499 -4.3561 -1.0128 30 1 1.6708 -4.0062 0.1811 31 1 0.6203 -5.0675 2.1685 32 1 1.7450 -4.9081 4.3537 33 1 4.8700 -2.7307 2.7047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709955039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:57 Heat of formation + Delta-G solvation = -22.834974 kcal Electronic energy + Delta-G solvation = -18250.165570 eV Core-core repulsion = 15467.662408 eV Total energy + Delta-G solvation = -2782.503162 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77619 -40.49770 -37.96504 -35.02557 -33.80909 -32.91977 -32.54790 -29.99123 -27.13647 -25.46289 -24.42654 -23.35710 -22.55639 -19.86313 -18.69925 -18.35413 -17.41111 -17.27743 -16.82867 -16.50851 -16.12695 -15.58378 -15.16266 -14.63324 -14.58405 -14.48605 -14.35775 -14.09995 -13.81391 -13.10877 -12.82054 -12.48688 -12.25484 -12.06317 -11.64374 -11.59762 -11.02384 -10.80729 -10.63092 -10.51919 -10.30352 -10.05819 -9.62148 -8.18931 -6.21060 0.29916 0.48720 1.36855 1.42157 1.49236 1.76443 2.39793 2.48911 3.01179 3.18070 3.59960 3.79263 3.87970 4.08372 4.17566 4.18188 4.24346 4.33446 4.35860 4.59212 4.76073 4.80287 4.94416 5.01820 5.18955 5.22763 5.29453 5.39537 5.48156 5.73426 5.89234 5.92415 6.36981 6.47000 6.86543 7.11905 7.33724 7.42805 8.96022 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017944 B = 0.011517 C = 0.008680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.018485 B = 2430.522881 C = 3225.208827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.018 3.982 3 Si 0.923 3.077 4 H -0.267 1.267 5 H -0.312 1.312 6 H -0.233 1.233 7 C -0.496 4.496 8 H 0.056 0.944 9 C -0.005 4.005 10 H 0.060 0.940 11 C -0.121 4.121 12 C -0.118 4.118 13 C 0.538 3.462 14 O -0.618 6.618 15 N -0.693 5.693 16 C 0.203 3.797 17 H 0.113 0.887 18 C -0.126 4.126 19 C -0.057 4.057 20 C -0.181 4.181 21 C 0.084 3.916 22 N -0.505 5.505 23 C 0.097 3.903 24 H 0.259 0.741 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.395 0.605 30 H 0.112 0.888 31 H 0.145 0.855 32 H 0.178 0.822 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.890 -4.330 3.734 11.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.179 4.179 3 Si 0.750 3.250 4 H -0.193 1.193 5 H -0.240 1.240 6 H -0.156 1.156 7 C -0.534 4.534 8 H 0.074 0.926 9 C -0.024 4.024 10 H 0.078 0.922 11 C -0.159 4.159 12 C -0.158 4.158 13 C 0.327 3.673 14 O -0.503 6.503 15 N -0.341 5.341 16 C 0.098 3.902 17 H 0.130 0.870 18 C -0.128 4.128 19 C -0.083 4.083 20 C -0.201 4.201 21 C -0.072 4.072 22 N -0.214 5.214 23 C -0.060 4.060 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.118 0.882 29 H 0.231 0.769 30 H 0.130 0.870 31 H 0.163 0.837 32 H 0.195 0.805 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 10.068 -4.289 4.090 11.683 hybrid contribution -1.221 0.633 -0.914 1.651 sum 8.847 -3.656 3.176 10.086 Atomic orbital electron populations 1.70041 1.08261 1.27400 1.53361 1.25687 0.95032 1.02283 0.94894 0.86199 0.80097 0.79896 0.78817 1.19306 1.24004 1.15580 1.21270 0.90337 0.93447 1.48335 0.92622 1.19634 0.95442 0.91990 0.95359 0.92195 1.21949 0.99995 0.98866 0.95051 1.21395 1.03503 0.90331 1.00536 1.20163 0.73469 0.91882 0.81798 1.90654 1.54152 1.63526 1.41939 1.45276 1.69616 1.10357 1.08825 1.19895 0.98773 0.91184 0.80310 0.86953 1.20959 0.96415 0.98434 0.97015 1.21417 0.93886 0.93782 0.99214 1.22314 1.01955 1.01910 0.93929 1.23068 0.91249 0.95493 0.97419 1.67689 1.11091 1.09371 1.33241 1.22845 1.00114 0.95994 0.87049 0.93178 0.92831 0.89342 0.90112 0.88198 0.76942 0.87011 0.83716 0.80493 0.80437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.83 13.96 21.45 0.30 -55.53 16 2 C 0.02 0.94 5.46 84.65 0.46 1.40 16 3 Si 0.92 40.06 24.69 68.60 1.69 41.76 16 4 H -0.27 -11.14 6.94 99.48 0.69 -10.45 16 5 H -0.31 -14.37 7.11 99.48 0.71 -13.67 16 6 H -0.23 -8.84 6.38 99.48 0.63 -8.21 16 7 C -0.50 -23.76 6.45 25.60 0.17 -23.60 16 8 H 0.06 2.97 5.13 -2.91 -0.01 2.96 16 9 C -0.01 -0.19 1.82 -11.45 -0.02 -0.21 16 10 H 0.06 2.16 6.80 -2.38 -0.02 2.15 16 11 C -0.12 -4.04 5.19 30.74 0.16 -3.88 16 12 C -0.12 -4.34 5.50 29.71 0.16 -4.18 16 13 C 0.54 20.72 7.44 87.77 0.65 21.37 16 14 O -0.62 -27.75 17.78 -3.05 -0.05 -27.81 16 15 N -0.69 -22.67 4.12 -450.75 -1.86 -24.53 16 16 C 0.20 6.18 3.03 44.36 0.13 6.31 16 17 H 0.11 2.56 8.08 -2.38 -0.02 2.54 16 18 C -0.13 -4.00 4.41 -19.78 -0.09 -4.08 16 19 C -0.06 -1.96 7.48 22.47 0.17 -1.80 16 20 C -0.18 -5.51 10.11 22.36 0.23 -5.29 16 21 C 0.08 2.39 11.18 84.69 0.95 3.34 16 22 N -0.51 -15.57 10.36 -195.84 -2.03 -17.60 16 23 C 0.10 2.83 10.85 84.67 0.92 3.75 16 24 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 25 H 0.05 1.88 4.31 -2.39 -0.01 1.87 16 26 H 0.09 2.29 8.13 -2.39 -0.02 2.28 16 27 H 0.08 3.52 7.43 -2.38 -0.02 3.50 16 28 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.40 11.98 8.44 -92.71 -0.78 11.20 16 30 H 0.11 4.32 6.67 -2.91 -0.02 4.30 16 31 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 32 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 33 H 0.18 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -65.79 265.86 2.21 -63.58 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.27 Total: 27.00 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 3.89 Total: -6.87 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -3.59 Total: -97.66 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.05 Total: -27.81 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 1.69 Total: 41.76 kcal Total: -65.79 2.21 -63.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709955039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.748 kcal (2) G-P(sol) polarization free energy of solvation -65.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds