Wall clock time and date at job start Mon Mar 30 2020 04:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46901 * 2 1 4 4 C 1.53002 * 109.47188 * 119.99966 * 2 1 3 5 5 C 1.50697 * 109.47021 * 185.00268 * 4 2 1 6 6 H 1.07995 * 119.99971 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99846 * 180.27854 * 5 4 2 8 8 N 1.31515 * 120.00018 * 359.71764 * 7 5 4 9 9 Si 1.86798 * 120.00016 * 179.72275 * 7 5 4 10 10 H 1.48496 * 109.47015 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47255 * 119.99903 * 9 7 5 12 12 H 1.48498 * 109.47068 * 239.99818 * 9 7 5 13 13 S 1.81396 * 109.47246 * 239.99969 * 2 1 3 14 14 O 1.42107 * 109.46921 * 300.27992 * 13 2 1 15 15 C 1.81399 * 102.99988 * 56.66536 * 13 2 1 16 16 C 1.53182 * 109.54378 * 175.72128 * 15 13 2 17 17 C 1.53095 * 109.16438 * 183.15440 * 16 15 13 18 18 O 1.42904 * 109.41080 * 57.60725 * 17 16 15 19 19 C 1.42901 * 114.10198 * 298.84032 * 18 17 16 20 20 C 1.53094 * 109.41151 * 61.15821 * 19 18 17 21 21 H 1.09002 * 109.47309 * 174.49182 * 1 2 3 22 22 H 1.09007 * 109.47178 * 294.48978 * 1 2 3 23 23 H 1.08999 * 109.47333 * 54.48942 * 1 2 3 24 24 H 1.09003 * 109.46996 * 64.99562 * 4 2 1 25 25 H 1.09001 * 109.47223 * 305.00087 * 4 2 1 26 26 H 0.97002 * 120.00104 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.54716 * 295.99044 * 15 13 2 28 28 H 1.08993 * 109.52243 * 303.06140 * 16 15 13 29 29 H 1.09002 * 109.52205 * 63.25234 * 16 15 13 30 30 H 1.09005 * 109.47793 * 297.62944 * 17 16 15 31 31 H 1.08992 * 109.48323 * 177.59175 * 17 16 15 32 32 H 1.09005 * 109.48217 * 301.17816 * 19 18 17 33 33 H 1.08998 * 109.49242 * 181.14680 * 19 18 17 34 34 H 1.09003 * 109.52330 * 182.48377 * 20 19 18 35 35 H 1.09001 * 109.52204 * 62.30355 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2309 -1.1979 2.3551 8 7 3.5769 -1.8422 3.2968 9 14 6.0932 -1.0727 2.4297 10 1 6.5847 -0.3021 1.2593 11 1 6.4931 -0.3812 3.6815 12 1 6.6822 -2.4356 2.4072 13 16 2.1347 -0.8551 -1.4811 14 8 1.6557 -2.1930 -1.4843 15 6 1.3550 0.0695 -2.8330 16 6 1.8549 -0.4689 -4.1771 17 6 1.2530 0.3679 -5.3090 18 8 1.6091 1.7398 -5.1265 19 6 1.1276 2.3106 -3.9080 20 6 1.7245 1.5517 -2.7199 21 1 -0.3634 -1.0229 -0.0986 22 1 -0.3634 0.4260 0.9353 23 1 -0.3634 0.5969 -0.8365 24 1 1.7516 -1.7715 1.2056 25 1 1.6054 -0.2617 2.1370 26 1 4.0616 -2.2521 4.0303 27 1 0.2723 -0.0418 -2.7741 28 1 2.9422 -0.4032 -4.2141 29 1 1.5478 -1.5087 -4.2900 30 1 0.1675 0.2694 -5.2962 31 1 1.6388 0.0164 -6.2658 32 1 0.0405 2.2374 -3.8770 33 1 1.4231 3.3584 -3.8556 34 1 1.3243 1.9570 -1.7906 35 1 2.8093 1.6583 -2.7275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709997197.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:11 Heat of formation + Delta-G solvation = -108.128190 kcal Electronic energy + Delta-G solvation = -16577.936657 eV Core-core repulsion = 13894.886104 eV Total energy + Delta-G solvation = -2683.050553 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.11490 -35.05192 -34.62146 -33.60654 -32.11351 -31.03703 -27.61420 -25.05320 -23.66230 -23.33733 -20.69397 -20.27198 -16.99001 -16.44482 -16.26100 -16.02036 -15.37880 -14.76626 -14.64725 -14.40384 -13.80675 -13.74605 -13.13459 -12.37561 -12.30697 -12.02356 -11.92276 -11.64988 -11.51709 -11.35660 -11.31182 -10.87744 -10.77354 -10.56834 -10.43470 -10.28944 -9.84190 -9.59953 -9.19074 -8.88357 -8.43802 -7.41207 -6.07861 -4.13649 2.14875 3.28586 3.34508 3.36923 3.39307 3.85919 4.37198 4.40683 4.74849 4.83241 5.03510 5.18948 5.23387 5.29483 5.43955 5.46957 5.60421 5.62126 5.69355 5.73504 5.81696 5.87585 6.02952 6.03944 6.24471 6.34033 6.56286 6.77925 7.15054 7.54323 7.60249 7.88146 8.23451 8.92917 9.52322 11.03260 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031664 B = 0.006457 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.068135 B = 4335.620243 C = 4556.614432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.387 4.387 3 H 0.112 0.888 4 C 0.043 3.957 5 C -0.536 4.536 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.283 1.283 13 S 1.263 4.737 14 O -0.849 6.849 15 C -0.436 4.436 16 C -0.128 4.128 17 C 0.067 3.933 18 O -0.384 6.384 19 C 0.064 3.936 20 C -0.128 4.128 21 H 0.051 0.949 22 H 0.059 0.941 23 H 0.044 0.956 24 H 0.022 0.978 25 H 0.027 0.973 26 H 0.262 0.738 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.044 0.956 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.493 7.959 -13.546 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.507 4.507 3 H 0.130 0.870 4 C 0.005 3.995 5 C -0.575 4.575 6 H 0.085 0.915 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.718 3.282 10 H -0.190 1.190 11 H -0.209 1.209 12 H -0.209 1.209 13 S 1.462 4.538 14 O -0.845 6.845 15 C -0.550 4.550 16 C -0.167 4.167 17 C -0.011 4.011 18 O -0.303 6.303 19 C -0.014 4.014 20 C -0.166 4.166 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.063 0.937 24 H 0.040 0.960 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.783 7.146 -13.593 15.461 hybrid contribution -1.586 -0.241 0.733 1.764 sum -3.370 6.906 -12.860 14.981 Atomic orbital electron populations 1.21872 0.95434 1.01360 1.01637 1.27417 0.99736 1.09504 1.14018 0.86986 1.18892 0.96062 0.95215 0.89346 1.21305 0.91494 1.35330 1.09322 0.91522 1.25041 0.98743 0.94792 0.95526 1.69977 1.35792 1.34951 1.11985 0.86548 0.85323 0.78045 0.78300 1.19046 1.20941 1.20855 1.70930 1.13637 0.84027 0.85225 1.93014 1.80274 1.26859 1.84338 1.27821 1.08754 1.05946 1.12466 1.21791 1.02060 0.99773 0.93033 1.22522 0.98485 0.81836 0.98239 1.87890 1.77670 1.25093 1.39626 1.22574 0.97415 0.97258 0.84117 1.21867 1.02973 0.92516 0.99278 0.93009 0.92158 0.93748 0.95957 0.95506 0.92801 0.89907 0.89849 0.90782 0.93702 0.88901 0.93763 0.88773 0.90114 0.89409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 8.85 37.16 0.33 -2.25 16 2 C -0.39 -7.48 2.18 -26.73 -0.06 -7.54 16 3 H 0.11 1.88 7.20 -51.93 -0.37 1.51 16 4 C 0.04 1.09 4.45 -27.88 -0.12 0.96 16 5 C -0.54 -14.09 8.53 -34.44 -0.29 -14.38 16 6 H 0.07 1.57 7.60 -52.49 -0.40 1.17 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 9 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 10 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 S 1.26 22.71 11.46 -107.50 -1.23 21.48 16 14 O -0.85 -20.27 18.11 -35.23 -0.64 -20.91 16 15 C -0.44 -6.00 2.15 -26.55 -0.06 -6.06 16 16 C -0.13 -1.60 5.43 -26.59 -0.14 -1.74 16 17 C 0.07 0.75 6.84 37.21 0.25 1.00 16 18 O -0.38 -4.74 10.76 -35.23 -0.38 -5.12 16 19 C 0.06 0.69 6.84 37.21 0.25 0.94 16 20 C -0.13 -1.46 5.12 -26.59 -0.14 -1.60 16 21 H 0.05 1.01 8.12 -51.93 -0.42 0.59 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.04 0.65 6.87 -51.93 -0.36 0.29 16 24 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.08 1.20 7.30 -51.93 -0.38 0.82 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.08 0.87 6.71 -51.93 -0.35 0.52 16 35 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 293.88 15.07 4.43 4.43 Total: -1.00 -33.55 293.88 -7.82 -41.37 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.64 Total: -2.11 kcal Atomic # 6 Polarization: -28.99 SS G_CDS: -0.07 Total: -29.07 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.59 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.02 Total: -26.03 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 22.71 SS G_CDS: -1.23 Total: 21.48 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -33.55 -7.82 -41.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709997197.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.756 kcal (2) G-P(sol) polarization free energy of solvation -33.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds