Wall clock time and date at job start Mon Mar 30 2020 04:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46901 * 2 1 4 4 C 1.53002 * 109.47188 * 119.99966 * 2 1 3 5 5 C 1.50697 * 109.47021 * 185.00268 * 4 2 1 6 6 H 1.07995 * 119.99971 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99846 * 180.27854 * 5 4 2 8 8 N 1.31515 * 120.00018 * 359.71764 * 7 5 4 9 9 Si 1.86798 * 120.00016 * 179.72275 * 7 5 4 10 10 H 1.48496 * 109.47015 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47255 * 119.99903 * 9 7 5 12 12 H 1.48498 * 109.47068 * 239.99818 * 9 7 5 13 13 S 1.81396 * 109.47246 * 239.99969 * 2 1 3 14 14 O 1.42107 * 109.46921 * 300.27992 * 13 2 1 15 15 C 1.81399 * 102.99988 * 56.66536 * 13 2 1 16 16 C 1.53182 * 109.54378 * 175.72128 * 15 13 2 17 17 C 1.53095 * 109.16438 * 183.15440 * 16 15 13 18 18 O 1.42904 * 109.41080 * 57.60725 * 17 16 15 19 19 C 1.42901 * 114.10198 * 298.84032 * 18 17 16 20 20 C 1.53094 * 109.41151 * 61.15821 * 19 18 17 21 21 H 1.09002 * 109.47309 * 174.49182 * 1 2 3 22 22 H 1.09007 * 109.47178 * 294.48978 * 1 2 3 23 23 H 1.08999 * 109.47333 * 54.48942 * 1 2 3 24 24 H 1.09003 * 109.46996 * 64.99562 * 4 2 1 25 25 H 1.09001 * 109.47223 * 305.00087 * 4 2 1 26 26 H 0.97002 * 120.00104 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.54716 * 295.99044 * 15 13 2 28 28 H 1.08993 * 109.52243 * 303.06140 * 16 15 13 29 29 H 1.09002 * 109.52205 * 63.25234 * 16 15 13 30 30 H 1.09005 * 109.47793 * 297.62944 * 17 16 15 31 31 H 1.08992 * 109.48323 * 177.59175 * 17 16 15 32 32 H 1.09005 * 109.48217 * 301.17816 * 19 18 17 33 33 H 1.08998 * 109.49242 * 181.14680 * 19 18 17 34 34 H 1.09003 * 109.52330 * 182.48377 * 20 19 18 35 35 H 1.09001 * 109.52204 * 62.30355 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3127 6 1 4.0789 -0.0861 0.5392 7 6 4.2309 -1.1979 2.3551 8 7 3.5769 -1.8422 3.2968 9 14 6.0932 -1.0727 2.4297 10 1 6.5847 -0.3021 1.2593 11 1 6.4931 -0.3812 3.6815 12 1 6.6822 -2.4356 2.4072 13 16 2.1347 -0.8551 -1.4811 14 8 1.6557 -2.1930 -1.4843 15 6 1.3550 0.0695 -2.8330 16 6 1.8549 -0.4689 -4.1771 17 6 1.2530 0.3679 -5.3090 18 8 1.6091 1.7398 -5.1265 19 6 1.1276 2.3106 -3.9080 20 6 1.7245 1.5517 -2.7199 21 1 -0.3634 -1.0229 -0.0986 22 1 -0.3634 0.4260 0.9353 23 1 -0.3634 0.5969 -0.8365 24 1 1.7516 -1.7715 1.2056 25 1 1.6054 -0.2617 2.1370 26 1 4.0616 -2.2521 4.0303 27 1 0.2723 -0.0418 -2.7741 28 1 2.9422 -0.4032 -4.2141 29 1 1.5478 -1.5087 -4.2900 30 1 0.1675 0.2694 -5.2962 31 1 1.6388 0.0164 -6.2658 32 1 0.0405 2.2374 -3.8770 33 1 1.4231 3.3584 -3.8556 34 1 1.3243 1.9570 -1.7906 35 1 2.8093 1.6583 -2.7275 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709997197.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:10 Heat of formation + Delta-G solvation = -132.387662 kcal Electronic energy + Delta-G solvation = -16578.988627 eV Core-core repulsion = 13894.886104 eV Total energy + Delta-G solvation = -2684.102523 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.01903 -36.75132 -36.39171 -34.72324 -33.96330 -31.94308 -29.49789 -26.06831 -25.28667 -24.53229 -22.32375 -21.34230 -18.50711 -18.36586 -17.46250 -16.93128 -16.67969 -16.47902 -15.76030 -15.65696 -15.09987 -15.04334 -14.54469 -14.00497 -13.74466 -13.68511 -13.32656 -13.20770 -13.05827 -12.67314 -12.61447 -12.27180 -12.20708 -12.14817 -11.73891 -11.46563 -11.37030 -11.13818 -10.92630 -10.59343 -10.15553 -8.92409 -8.17033 -6.30373 0.70672 1.48997 1.50348 1.63702 1.91300 2.46899 2.97476 3.05113 3.19410 3.71898 3.79462 4.05950 4.12812 4.13160 4.26130 4.36322 4.38966 4.59557 4.60995 4.73217 4.80310 4.84136 4.89159 5.01122 5.06916 5.11869 5.18082 5.34546 5.42817 5.52511 5.80233 6.15578 6.31517 6.87831 7.41479 8.96211 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031664 B = 0.006457 C = 0.006143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.068135 B = 4335.620243 C = 4556.614432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.385 4.385 3 H 0.148 0.852 4 C 0.046 3.954 5 C -0.541 4.541 6 H 0.099 0.901 7 C -0.006 4.006 8 N -0.942 5.942 9 Si 0.962 3.038 10 H -0.233 1.233 11 H -0.282 1.282 12 H -0.288 1.288 13 S 1.274 4.726 14 O -0.920 6.920 15 C -0.413 4.413 16 C -0.134 4.134 17 C 0.069 3.931 18 O -0.395 6.395 19 C 0.062 3.938 20 C -0.132 4.132 21 H 0.021 0.979 22 H 0.061 0.939 23 H 0.083 0.917 24 H -0.031 1.031 25 H -0.001 1.001 26 H 0.262 0.738 27 H 0.078 0.922 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.113 0.887 32 H 0.048 0.952 33 H 0.118 0.882 34 H 0.092 0.908 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.285 10.699 -15.805 19.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.504 4.504 3 H 0.166 0.834 4 C 0.008 3.992 5 C -0.579 4.579 6 H 0.117 0.883 7 C -0.204 4.204 8 N -0.582 5.582 9 Si 0.785 3.215 10 H -0.155 1.155 11 H -0.208 1.208 12 H -0.214 1.214 13 S 1.477 4.523 14 O -0.915 6.915 15 C -0.531 4.531 16 C -0.173 4.173 17 C -0.008 4.008 18 O -0.314 6.314 19 C -0.016 4.016 20 C -0.171 4.171 21 H 0.040 0.960 22 H 0.080 0.920 23 H 0.102 0.898 24 H -0.013 1.013 25 H 0.017 0.983 26 H 0.070 0.930 27 H 0.097 0.903 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.131 0.869 32 H 0.066 0.934 33 H 0.136 0.864 34 H 0.111 0.889 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.567 9.881 -15.830 18.670 hybrid contribution -2.064 -1.035 1.337 2.668 sum -2.631 8.846 -14.493 17.182 Atomic orbital electron populations 1.21861 0.94468 1.00310 1.03466 1.27321 1.00714 1.10537 1.11791 0.83447 1.18706 0.96471 0.92575 0.91414 1.21891 0.91989 1.34492 1.09565 0.88329 1.26151 1.04470 0.94493 0.95260 1.70158 1.38126 1.36795 1.13135 0.85432 0.78539 0.78031 0.79455 1.15531 1.20774 1.21447 1.69921 1.14283 0.82553 0.85553 1.92929 1.82026 1.30904 1.85676 1.27542 1.08065 1.07002 1.10483 1.21912 1.03200 0.99503 0.92696 1.22576 0.98641 0.81271 0.98350 1.87892 1.77868 1.25295 1.40314 1.22727 0.97668 0.98226 0.82960 1.22030 1.04383 0.90121 1.00521 0.95969 0.91983 0.89786 1.01272 0.98295 0.92978 0.90344 0.88387 0.91928 0.93480 0.86879 0.93380 0.86399 0.88930 0.87754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 8.85 71.98 0.64 -4.39 16 2 C -0.39 -14.63 2.18 30.60 0.07 -14.56 16 3 H 0.15 4.51 7.20 -2.39 -0.02 4.49 16 4 C 0.05 2.43 4.45 29.85 0.13 2.57 16 5 C -0.54 -28.48 8.53 25.60 0.22 -28.26 16 6 H 0.10 4.41 7.60 -2.91 -0.02 4.38 16 7 C -0.01 -0.35 5.46 84.66 0.46 0.11 16 8 N -0.94 -58.00 13.29 21.45 0.28 -57.71 16 9 Si 0.96 41.75 29.54 68.60 2.03 43.78 16 10 H -0.23 -8.80 7.11 99.48 0.71 -8.09 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 12 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 13 S 1.27 45.04 11.46 -56.49 -0.65 44.39 16 14 O -0.92 -45.53 18.11 -148.98 -2.70 -48.23 16 15 C -0.41 -10.31 2.15 30.71 0.07 -10.24 16 16 C -0.13 -3.02 5.43 30.69 0.17 -2.85 16 17 C 0.07 1.32 6.84 72.01 0.49 1.81 16 18 O -0.39 -8.13 10.76 -148.98 -1.60 -9.73 16 19 C 0.06 1.05 6.84 72.01 0.49 1.54 16 20 C -0.13 -2.45 5.12 30.68 0.16 -2.29 16 21 H 0.02 0.88 8.12 -2.39 -0.02 0.86 16 22 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 23 H 0.08 2.26 6.87 -2.39 -0.02 2.24 16 24 H -0.03 -1.95 8.14 -2.39 -0.02 -1.97 16 25 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 26 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.08 2.08 7.30 -2.39 -0.02 2.06 16 28 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.12 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.09 1.54 6.71 -2.39 -0.02 1.52 16 35 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -76.98 293.88 1.30 -75.67 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.05 Total: 8.41 kcal Atomic # 6 Polarization: -59.47 SS G_CDS: 2.89 Total: -56.58 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.28 Total: -57.71 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -4.30 Total: -57.97 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.78 kcal Atomic # 16 Polarization: 45.04 SS G_CDS: -0.65 Total: 44.39 kcal Total: -76.98 1.30 -75.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709997197.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.714 kcal (2) G-P(sol) polarization free energy of solvation -76.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds