Wall clock time and date at job start Mon Mar 30 2020 04:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 S 1.81399 * 109.47359 * 120.00032 * 2 1 3 14 14 O 1.42102 * 109.46735 * 61.39210 * 13 2 1 15 15 C 1.81396 * 102.99872 * 305.00204 * 13 2 1 16 16 C 1.53177 * 109.54250 * 304.55135 * 15 13 2 17 17 C 1.53094 * 109.15934 * 183.15640 * 16 15 13 18 18 O 1.42904 * 109.42003 * 57.61163 * 17 16 15 19 19 C 1.42901 * 114.09420 * 298.84097 * 18 17 16 20 20 C 1.53096 * 109.41457 * 61.15660 * 19 18 17 21 21 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 22 22 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 23 23 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 25 25 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 26 26 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.54600 * 64.82355 * 15 13 2 28 28 H 1.08999 * 109.52497 * 303.05718 * 16 15 13 29 29 H 1.08995 * 109.52051 * 63.25215 * 16 15 13 30 30 H 1.08998 * 109.48271 * 297.62465 * 17 16 15 31 31 H 1.09004 * 109.48101 * 177.59700 * 17 16 15 32 32 H 1.08999 * 109.48047 * 301.17194 * 19 18 17 33 33 H 1.09002 * 109.48942 * 181.14323 * 19 18 17 34 34 H 1.09002 * 109.52220 * 182.48067 * 20 19 18 35 35 H 1.09001 * 109.52535 * 62.29548 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 5.5401 -1.0905 -2.4195 9 14 3.3009 -2.1031 -3.6988 10 1 2.9338 -1.1567 -4.7827 11 1 4.1620 -3.1793 -4.2519 12 1 2.0685 -2.7009 -3.1252 13 16 2.1347 -0.8551 1.4811 14 8 1.6878 -2.2039 1.4649 15 6 1.3149 0.0374 2.8308 16 6 1.6359 1.5315 2.7265 17 6 1.0055 2.2649 3.9133 18 8 1.4966 1.7053 5.1330 19 6 1.1849 0.3216 5.3072 20 6 1.8225 -0.4899 4.1764 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6052 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 6.0241 -1.4941 -3.1568 27 1 0.2371 -0.1109 2.7643 28 1 2.7165 1.6739 2.7427 29 1 1.2293 1.9273 1.7959 30 1 -0.0783 2.1560 3.8738 31 1 1.2665 3.3223 3.8674 32 1 0.1034 0.1872 5.2859 33 1 1.5751 -0.0212 6.2655 34 1 1.5494 -1.5398 4.2827 35 1 2.9069 -0.3884 4.2218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709997198.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:13 Heat of formation + Delta-G solvation = -104.146580 kcal Electronic energy + Delta-G solvation = -16602.554521 eV Core-core repulsion = 13919.676624 eV Total energy + Delta-G solvation = -2682.877897 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.12171 -35.13982 -34.75031 -33.62013 -32.16964 -31.05594 -28.16702 -25.06993 -23.66960 -23.14686 -20.63873 -20.26206 -17.06936 -16.80490 -16.31280 -16.02837 -15.44612 -14.78418 -14.57904 -14.42865 -13.86483 -13.75467 -12.97596 -12.69125 -12.31622 -12.26848 -12.09151 -11.87661 -11.62623 -11.49908 -11.33346 -10.95561 -10.74045 -10.62759 -10.34901 -9.90839 -9.87017 -9.77039 -9.34369 -8.94859 -8.61366 -7.45770 -6.13357 -4.13421 2.08560 3.25872 3.28834 3.35871 3.42123 3.85984 4.33033 4.40412 4.73072 4.81133 5.02668 5.17708 5.22236 5.23037 5.40738 5.44636 5.50718 5.55884 5.61673 5.70731 5.75057 5.81238 6.01798 6.03330 6.20110 6.25133 6.40907 6.56377 7.06490 7.15019 7.20990 7.64576 8.38384 8.87528 9.49477 10.98660 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.039174 B = 0.006230 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.585749 B = 4493.210959 C = 4547.150577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.383 4.383 3 H 0.118 0.882 4 C 0.006 3.994 5 C -0.536 4.536 6 H 0.084 0.916 7 C 0.076 3.924 8 N -0.893 5.893 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.266 1.266 13 S 1.274 4.726 14 O -0.850 6.850 15 C -0.436 4.436 16 C -0.129 4.129 17 C 0.064 3.936 18 O -0.383 6.383 19 C 0.067 3.933 20 C -0.128 4.128 21 H 0.047 0.953 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.265 0.735 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.044 0.956 31 H 0.095 0.905 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.440 6.263 11.800 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.502 4.502 3 H 0.136 0.864 4 C -0.032 4.032 5 C -0.574 4.574 6 H 0.102 0.898 7 C -0.127 4.127 8 N -0.531 5.531 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.190 1.190 13 S 1.472 4.528 14 O -0.846 6.846 15 C -0.550 4.550 16 C -0.167 4.167 17 C -0.013 4.013 18 O -0.302 6.302 19 C -0.011 4.011 20 C -0.167 4.167 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.113 0.887 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.574 5.514 11.897 14.668 hybrid contribution -2.901 -0.782 -1.386 3.309 sum -9.475 4.732 10.510 14.921 Atomic orbital electron populations 1.21915 0.95343 1.01726 1.01624 1.27274 0.99588 1.09842 1.13513 0.86378 1.19371 0.97563 0.95251 0.91045 1.21146 0.89233 1.36365 1.10626 0.89755 1.24939 0.94699 0.95322 0.97726 1.69886 1.06443 1.44673 1.32096 0.86884 0.80582 0.80201 0.82422 1.20142 1.21061 1.19020 1.71247 1.12288 0.84220 0.85024 1.92995 1.80526 1.26663 1.84385 1.27836 1.09121 1.05618 1.12462 1.21878 1.03196 0.92338 0.99288 1.22573 0.97114 0.97551 0.84108 1.87897 1.78855 1.24096 1.39364 1.22519 0.98596 0.81643 0.98306 1.21796 1.02059 0.99901 0.92941 0.93358 0.92211 0.92920 0.95989 0.96041 0.92491 0.89909 0.89241 0.90137 0.93806 0.88739 0.93736 0.88862 0.90786 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.96 37.16 0.33 -2.12 16 2 C -0.38 -7.10 2.12 -26.73 -0.06 -7.15 16 3 H 0.12 1.92 7.29 -51.92 -0.38 1.54 16 4 C 0.01 0.14 3.51 -27.88 -0.10 0.04 16 5 C -0.54 -14.23 9.09 -34.44 -0.31 -14.54 16 6 H 0.08 2.22 7.85 -52.49 -0.41 1.81 16 7 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 8 N -0.89 -26.25 13.96 55.43 0.77 -25.47 16 9 Si 0.87 21.63 27.46 -169.99 -4.67 16.97 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.60 6.55 56.52 0.37 -6.23 16 13 S 1.27 22.58 11.50 -107.50 -1.24 21.34 16 14 O -0.85 -19.81 18.07 -35.23 -0.64 -20.45 16 15 C -0.44 -5.90 2.06 -26.55 -0.05 -5.95 16 16 C -0.13 -1.46 5.11 -26.59 -0.14 -1.59 16 17 C 0.06 0.68 6.84 37.21 0.25 0.94 16 18 O -0.38 -4.72 10.77 -35.23 -0.38 -5.10 16 19 C 0.07 0.74 6.84 37.21 0.25 1.00 16 20 C -0.13 -1.59 5.43 -26.59 -0.14 -1.73 16 21 H 0.05 0.67 6.31 -51.93 -0.33 0.34 16 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.02 0.51 7.56 -51.93 -0.39 0.12 16 25 H 0.02 0.55 7.15 -51.93 -0.37 0.18 16 26 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.08 1.16 7.18 -51.93 -0.37 0.79 16 28 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 0.85 6.54 -51.93 -0.34 0.51 16 30 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 289.39 15.07 4.36 4.36 Total: -1.00 -33.23 289.39 -7.41 -40.64 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -5.57 Total: -3.21 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: -0.06 Total: -29.08 kcal Atomic # 7 Polarization: -26.25 SS G_CDS: 0.77 Total: -25.47 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -1.02 Total: -25.55 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 22.58 SS G_CDS: -1.24 Total: 21.34 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -33.23 -7.41 -40.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709997198.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.508 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds