Wall clock time and date at job start Mon Mar 30 2020 04:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31523 * 119.99908 * 179.72112 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 359.71709 * 7 5 4 10 10 H 1.48500 * 109.47210 * 90.00069 * 9 7 5 11 11 H 1.48504 * 109.47424 * 210.00300 * 9 7 5 12 12 H 1.48502 * 109.46888 * 330.00390 * 9 7 5 13 13 S 1.81399 * 109.47359 * 120.00032 * 2 1 3 14 14 O 1.42102 * 109.46735 * 61.39210 * 13 2 1 15 15 C 1.81396 * 102.99872 * 305.00204 * 13 2 1 16 16 C 1.53177 * 109.54250 * 304.55135 * 15 13 2 17 17 C 1.53094 * 109.15934 * 183.15640 * 16 15 13 18 18 O 1.42904 * 109.42003 * 57.61163 * 17 16 15 19 19 C 1.42901 * 114.09420 * 298.84097 * 18 17 16 20 20 C 1.53096 * 109.41457 * 61.15660 * 19 18 17 21 21 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 22 22 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 23 23 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 25 25 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 26 26 H 0.96995 * 120.00181 * 179.97438 * 8 7 5 27 27 H 1.08998 * 109.54600 * 64.82355 * 15 13 2 28 28 H 1.08999 * 109.52497 * 303.05718 * 16 15 13 29 29 H 1.08995 * 109.52051 * 63.25215 * 16 15 13 30 30 H 1.08998 * 109.48271 * 297.62465 * 17 16 15 31 31 H 1.09004 * 109.48101 * 177.59700 * 17 16 15 32 32 H 1.08999 * 109.48047 * 301.17194 * 19 18 17 33 33 H 1.09002 * 109.48942 * 181.14323 * 19 18 17 34 34 H 1.09002 * 109.52220 * 182.48067 * 20 19 18 35 35 H 1.09001 * 109.52535 * 62.29548 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 5.5401 -1.0905 -2.4195 9 14 3.3009 -2.1031 -3.6988 10 1 2.9338 -1.1567 -4.7827 11 1 4.1620 -3.1793 -4.2519 12 1 2.0685 -2.7009 -3.1252 13 16 2.1347 -0.8551 1.4811 14 8 1.6878 -2.2039 1.4649 15 6 1.3149 0.0374 2.8308 16 6 1.6359 1.5315 2.7265 17 6 1.0055 2.2649 3.9133 18 8 1.4966 1.7053 5.1330 19 6 1.1849 0.3216 5.3072 20 6 1.8225 -0.4899 4.1764 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.6052 -0.2616 -2.1370 25 1 1.7516 -1.7714 -1.2057 26 1 6.0241 -1.4941 -3.1568 27 1 0.2371 -0.1109 2.7643 28 1 2.7165 1.6739 2.7427 29 1 1.2293 1.9273 1.7959 30 1 -0.0783 2.1560 3.8738 31 1 1.2665 3.3223 3.8674 32 1 0.1034 0.1872 5.2859 33 1 1.5751 -0.0212 6.2655 34 1 1.5494 -1.5398 4.2827 35 1 2.9069 -0.3884 4.2218 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709997198.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:13 Heat of formation + Delta-G solvation = -127.966783 kcal Electronic energy + Delta-G solvation = -16603.587443 eV Core-core repulsion = 13919.676624 eV Total energy + Delta-G solvation = -2683.910819 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02854 -36.76979 -36.42377 -34.73861 -34.06050 -31.96475 -29.95260 -26.06731 -25.01017 -24.50481 -22.21536 -21.35642 -18.92987 -18.38085 -17.48263 -16.94986 -16.69559 -16.42180 -15.79199 -15.66879 -15.25076 -14.91018 -14.60451 -14.22740 -14.02799 -13.76253 -13.43026 -13.23713 -13.11976 -12.66553 -12.60350 -12.42015 -12.19968 -11.81366 -11.74742 -11.57026 -11.38888 -11.33241 -10.93713 -10.76133 -10.18135 -8.89514 -8.28072 -6.29919 0.68450 1.29246 1.34395 1.43450 1.89807 2.34544 2.95065 3.04701 3.08174 3.71013 3.78296 4.02100 4.09526 4.11683 4.24912 4.35903 4.41208 4.58940 4.60102 4.71276 4.77789 4.82040 4.87276 4.94919 5.01021 5.10365 5.16389 5.18016 5.32491 5.39705 5.60750 6.26960 6.31247 6.77533 7.35288 8.86139 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.039174 B = 0.006230 C = 0.006156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.585749 B = 4493.210959 C = 4547.150577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.381 4.381 3 H 0.147 0.853 4 C 0.005 3.995 5 C -0.532 4.532 6 H 0.080 0.920 7 C 0.022 3.978 8 N -0.932 5.932 9 Si 0.919 3.081 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.272 1.272 13 S 1.264 4.736 14 O -0.916 6.916 15 C -0.411 4.411 16 C -0.133 4.133 17 C 0.062 3.938 18 O -0.396 6.396 19 C 0.070 3.930 20 C -0.135 4.135 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.027 0.973 24 H 0.027 0.973 25 H -0.008 1.008 26 H 0.267 0.733 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.673 8.131 12.669 17.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.500 4.500 3 H 0.165 0.835 4 C -0.033 4.033 5 C -0.570 4.570 6 H 0.098 0.902 7 C -0.177 4.177 8 N -0.572 5.572 9 Si 0.745 3.255 10 H -0.185 1.185 11 H -0.208 1.208 12 H -0.197 1.197 13 S 1.468 4.532 14 O -0.912 6.912 15 C -0.529 4.529 16 C -0.171 4.171 17 C -0.015 4.015 18 O -0.315 6.315 19 C -0.008 4.008 20 C -0.174 4.174 21 H 0.099 0.901 22 H 0.091 0.909 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.011 0.989 26 H 0.076 0.924 27 H 0.101 0.899 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.068 0.932 33 H 0.130 0.870 34 H 0.082 0.918 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.803 7.363 12.724 16.643 hybrid contribution -2.544 -1.270 -1.518 3.223 sum -10.348 6.093 11.206 16.425 Atomic orbital electron populations 1.21905 0.93645 1.00880 1.03929 1.27183 1.01132 1.10498 1.11177 0.83532 1.19287 0.95799 0.94321 0.93899 1.21527 0.90872 1.34825 1.09788 0.90218 1.25664 0.95399 0.96579 1.00075 1.69981 1.07645 1.46399 1.33164 0.86117 0.79206 0.79530 0.80643 1.18459 1.20792 1.19660 1.70415 1.13590 0.83132 0.86067 1.92919 1.82358 1.30119 1.85774 1.27531 1.08477 1.06526 1.10400 1.22025 1.04218 0.90216 1.00650 1.22726 0.97457 0.98466 0.82897 1.87896 1.79115 1.24384 1.40097 1.22578 0.98859 0.81028 0.98353 1.21912 1.02915 0.99732 0.92831 0.90101 0.90913 0.95334 0.95489 0.98919 0.92401 0.89937 0.88318 0.88774 0.93088 0.86556 0.93227 0.86977 0.91761 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 8.96 71.98 0.64 -3.87 16 2 C -0.38 -13.54 2.12 30.59 0.06 -13.47 16 3 H 0.15 4.33 7.29 -2.39 -0.02 4.32 16 4 C 0.01 0.24 3.51 29.85 0.10 0.35 16 5 C -0.53 -28.33 9.09 25.60 0.23 -28.10 16 6 H 0.08 4.21 7.85 -2.91 -0.02 4.18 16 7 C 0.02 1.23 5.47 84.65 0.46 1.69 16 8 N -0.93 -55.41 13.96 21.45 0.30 -55.11 16 9 Si 0.92 44.69 27.46 68.60 1.88 46.57 16 10 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.27 -13.35 6.55 99.48 0.65 -12.69 16 13 S 1.26 44.41 11.50 -56.49 -0.65 43.76 16 14 O -0.92 -43.90 18.07 -148.98 -2.69 -46.60 16 15 C -0.41 -10.23 2.06 30.71 0.06 -10.17 16 16 C -0.13 -2.54 5.11 30.68 0.16 -2.38 16 17 C 0.06 1.07 6.84 72.01 0.49 1.57 16 18 O -0.40 -8.40 10.77 -148.98 -1.60 -10.00 16 19 C 0.07 1.35 6.84 72.01 0.49 1.84 16 20 C -0.14 -3.10 5.43 30.69 0.17 -2.93 16 21 H 0.08 1.96 6.31 -2.38 -0.02 1.94 16 22 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 23 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.03 1.23 7.56 -2.39 -0.02 1.21 16 25 H -0.01 -0.40 7.15 -2.38 -0.02 -0.41 16 26 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 27 H 0.08 2.10 7.18 -2.39 -0.02 2.09 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.09 1.57 6.54 -2.39 -0.02 1.56 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -72.29 289.39 1.12 -71.17 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: 1.00 Total: 5.68 kcal Atomic # 6 Polarization: -58.36 SS G_CDS: 2.88 Total: -55.48 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: 0.30 Total: -55.11 kcal Atomic # 8 Polarization: -52.30 SS G_CDS: -4.30 Total: -56.59 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Atomic # 16 Polarization: 44.41 SS G_CDS: -0.65 Total: 43.76 kcal Total: -72.29 1.12 -71.17 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709997198.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.794 kcal (2) G-P(sol) polarization free energy of solvation -72.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds