Wall clock time and date at job start Mon Mar 30 2020 04:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86808 * 119.99790 * 2 1 4 4 H 1.48498 * 109.46944 * 269.99942 * 3 2 1 5 5 H 1.48496 * 109.47078 * 30.00210 * 3 2 1 6 6 H 1.48499 * 109.46955 * 150.00225 * 3 2 1 7 7 C 1.37879 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99754 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00029 * 180.02562 * 7 2 1 10 10 H 1.09001 * 109.47556 * 59.99494 * 9 7 2 11 11 N 1.46905 * 109.46910 * 299.99533 * 9 7 2 12 12 C 1.50700 * 109.47079 * 179.97438 * 9 7 2 13 13 C 1.34234 * 125.03121 * 244.99544 * 12 9 7 14 14 C 1.46492 * 106.99828 * 179.97438 * 13 12 9 15 15 C 1.40701 * 106.03436 * 0.02562 * 14 13 12 16 16 C 1.39089 * 119.33540 * 179.97438 * 15 14 13 17 17 C 1.37793 * 119.77186 * 0.02562 * 16 15 14 18 18 C 1.38787 * 120.66865 * 359.97438 * 17 16 15 19 19 C 1.36657 * 120.53075 * 0.02562 * 18 17 16 20 20 C 1.50704 * 120.11836 * 180.02562 * 19 18 17 21 21 O 1.42898 * 109.47102 * 359.95942 * 20 19 18 22 22 N 1.36835 * 125.03080 * 64.69674 * 12 9 7 23 23 H 0.97001 * 125.06153 * 359.97438 * 22 12 9 24 24 H 0.97001 * 119.99716 * 359.97438 * 1 2 3 25 25 H 1.00901 * 110.99869 * 300.00472 * 11 9 7 26 26 H 1.00896 * 110.99543 * 63.95595 * 11 9 7 27 27 H 1.08003 * 126.49963 * 0.04135 * 13 12 9 28 28 H 1.07992 * 120.11578 * 179.97438 * 16 15 14 29 29 H 1.08005 * 119.66129 * 179.97438 * 17 16 15 30 30 H 1.08007 * 119.73168 * 180.02562 * 18 17 16 31 31 H 1.08999 * 109.46745 * 119.95847 * 20 19 18 32 32 H 1.08995 * 109.46981 * 239.95314 * 20 19 18 33 33 H 0.96696 * 113.99912 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 1 3.8747 -0.6807 0.8905 11 7 4.0017 -0.5007 -1.1988 12 6 4.0140 -2.6148 -0.0001 13 6 4.7085 -3.1866 0.9962 14 6 4.9917 -4.5639 0.5853 15 6 4.4157 -4.7154 -0.6894 16 6 4.5238 -5.9372 -1.3452 17 6 5.1905 -6.9812 -0.7415 18 6 5.7569 -6.8266 0.5161 19 6 5.6626 -5.6348 1.1782 20 6 6.2816 -5.4771 2.5432 21 8 6.9050 -6.7039 2.9282 22 7 3.8247 -3.5147 -1.0133 23 1 3.3471 -3.3332 -1.8378 24 1 -0.4850 0.8401 0.0004 25 1 3.6784 -0.9578 -2.0383 26 1 3.7322 0.4715 -1.1898 27 1 5.0018 -2.7201 1.9251 28 1 4.0861 -6.0676 -2.3238 29 1 5.2730 -7.9293 -1.2521 30 1 6.2764 -7.6548 0.9751 31 1 7.0284 -4.6836 2.5139 32 1 5.5071 -5.2205 3.2659 33 1 7.3255 -6.6753 3.7985 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713725916.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:08 Heat of formation + Delta-G solvation = 5.431021 kcal Electronic energy + Delta-G solvation = -17189.604693 eV Core-core repulsion = 14408.327237 eV Total energy + Delta-G solvation = -2781.277456 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.79808 -37.59967 -36.13263 -34.56394 -32.01395 -31.83503 -29.07748 -28.64511 -26.37655 -25.44994 -22.81182 -21.41342 -20.28283 -19.48082 -17.32171 -17.23748 -16.73954 -15.65838 -15.49919 -14.88022 -14.69739 -14.23861 -13.89507 -13.62493 -13.45345 -12.91225 -12.61054 -12.39919 -11.93667 -11.83444 -11.29703 -11.13728 -10.96885 -10.74895 -10.42649 -10.39239 -10.19746 -9.74805 -9.03174 -8.92677 -7.88749 -7.56652 -7.06468 -6.38065 -4.44438 1.52441 2.09131 3.02452 3.17326 3.18472 3.38810 3.72215 4.09593 4.26652 4.29174 4.91729 5.08234 5.29487 5.35796 5.49070 5.61347 5.63810 5.73514 5.83356 5.90072 6.18235 6.23025 6.44176 6.50998 6.70026 6.87973 7.00333 7.16368 7.23380 7.46810 7.66309 7.73214 7.85684 8.05898 8.12391 8.30495 8.67142 9.19201 10.74046 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.034404 B = 0.005739 C = 0.005349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.673143 B = 4877.617325 C = 5233.002356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.257 1.257 7 C -0.558 4.558 8 H 0.077 0.923 9 C 0.225 3.775 10 H 0.067 0.933 11 N -0.847 5.847 12 C 0.168 3.832 13 C -0.239 4.239 14 C -0.091 4.091 15 C 0.090 3.910 16 C -0.127 4.127 17 C -0.118 4.118 18 C -0.130 4.130 19 C -0.056 4.056 20 C 0.121 3.879 21 O -0.572 6.572 22 N -0.580 5.580 23 H 0.414 0.586 24 H 0.269 0.731 25 H 0.328 0.672 26 H 0.322 0.678 27 H 0.138 0.862 28 H 0.114 0.886 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.697 -8.365 1.137 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.129 4.129 3 Si 0.701 3.299 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.182 1.182 7 C -0.597 4.597 8 H 0.095 0.905 9 C 0.115 3.885 10 H 0.085 0.915 11 N -0.381 5.381 12 C 0.058 3.942 13 C -0.263 4.263 14 C -0.096 4.096 15 C -0.018 4.018 16 C -0.148 4.148 17 C -0.137 4.137 18 C -0.150 4.150 19 C -0.057 4.057 20 C 0.044 3.956 21 O -0.377 6.377 22 N -0.181 5.181 23 H 0.251 0.749 24 H 0.079 0.921 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.156 0.844 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.142 0.858 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 10.957 -8.541 0.741 13.913 hybrid contribution -0.933 1.410 -0.074 1.692 sum 10.025 -7.131 0.667 12.320 Atomic orbital electron populations 1.69891 1.06252 1.27477 1.48344 1.25027 0.94887 0.99118 0.93818 0.87001 0.80461 0.83679 0.78719 1.20042 1.21452 1.18160 1.21602 0.89410 0.95205 1.53508 0.90469 1.18329 0.93839 0.84790 0.91501 0.91504 1.59687 1.66933 1.05906 1.05542 1.20567 0.94488 0.92097 0.87087 1.21217 1.10816 0.92970 1.01342 1.18843 1.01996 0.94253 0.94507 1.18136 0.99871 0.87896 0.95905 1.19990 1.03801 0.90912 1.00047 1.20654 0.99544 0.97751 0.95755 1.20326 1.02223 0.97356 0.95061 1.18699 0.98983 0.93065 0.94951 1.20804 0.95515 0.85613 0.93641 1.86433 1.75702 1.35733 1.39825 1.41728 1.48344 1.08982 1.19077 0.74937 0.92130 0.86081 0.86119 0.84388 0.86779 0.86402 0.85753 0.92426 0.92331 0.77595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.47 13.96 55.43 0.77 -24.70 16 2 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.87 19.80 24.61 -169.99 -4.18 15.61 16 4 H -0.27 -5.95 7.01 56.52 0.40 -5.55 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 7 C -0.56 -14.62 9.29 -34.44 -0.32 -14.94 16 8 H 0.08 2.26 7.98 -52.48 -0.42 1.84 16 9 C 0.23 5.05 2.70 -70.01 -0.19 4.86 16 10 H 0.07 1.54 7.15 -51.93 -0.37 1.17 16 11 N -0.85 -17.55 9.14 -6.65 -0.06 -17.61 16 12 C 0.17 3.49 5.82 -81.77 -0.48 3.01 16 13 C -0.24 -4.69 10.78 -37.67 -0.41 -5.09 16 14 C -0.09 -1.70 6.16 -105.14 -0.65 -2.34 16 15 C 0.09 1.64 7.28 -83.99 -0.61 1.03 16 16 C -0.13 -2.00 10.08 -39.43 -0.40 -2.40 16 17 C -0.12 -1.73 10.01 -39.54 -0.40 -2.12 16 18 C -0.13 -2.04 9.32 -39.95 -0.37 -2.41 16 19 C -0.06 -0.94 5.87 -104.69 -0.61 -1.55 16 20 C 0.12 1.63 7.29 36.01 0.26 1.89 16 21 O -0.57 -6.79 12.12 -35.23 -0.43 -7.21 16 22 N -0.58 -10.93 6.07 -6.95 -0.04 -10.97 16 23 H 0.41 7.09 8.96 -40.82 -0.37 6.72 16 24 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.33 6.35 8.98 -39.29 -0.35 6.00 16 26 H 0.32 6.78 4.29 -39.29 -0.17 6.61 16 27 H 0.14 2.44 8.06 -52.48 -0.42 2.02 16 28 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 29 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 30 H 0.12 1.80 6.96 -52.48 -0.37 1.44 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.38 2.51 9.12 45.56 0.42 2.93 16 LS Contribution 278.85 15.07 4.20 4.20 Total: -1.00 -30.60 278.85 -6.92 -37.52 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -2.91 Total: 21.27 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -4.27 Total: -18.11 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.67 Total: -53.28 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.43 Total: -7.21 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -4.18 Total: 15.61 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.60 -6.92 -37.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713725916.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.949 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds