Wall clock time and date at job start Mon Mar 30 2020 04:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00391 * 2 1 4 4 H 1.48500 * 109.47089 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46664 * 120.00199 * 3 2 1 6 6 H 1.48497 * 109.47346 * 240.00308 * 3 2 1 7 7 C 1.37881 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00080 * 344.43215 * 7 2 1 9 9 C 1.50698 * 120.00037 * 164.42889 * 7 2 1 10 10 H 1.09005 * 109.47324 * 54.80288 * 9 7 2 11 11 N 1.46904 * 109.47316 * 294.80905 * 9 7 2 12 12 C 1.50702 * 109.47222 * 174.80425 * 9 7 2 13 13 N 1.36834 * 125.02922 * 99.70017 * 12 9 7 14 14 H 0.97002 * 125.06682 * 0.02562 * 13 12 9 15 15 C 1.37694 * 109.86864 * 179.82235 * 13 12 9 16 16 C 1.39127 * 133.50430 * 180.02562 * 15 13 12 17 17 C 1.37749 * 119.77623 * 180.37852 * 16 15 13 18 18 C 1.38833 * 120.66574 * 0.02562 * 17 16 15 19 19 C 1.36624 * 120.53162 * 359.97438 * 18 17 16 20 20 C 1.39637 * 119.76057 * 0.03506 * 19 18 17 21 21 C 1.34230 * 125.03479 * 280.00030 * 12 9 7 22 22 C 1.50699 * 126.50637 * 0.02562 * 21 12 9 23 23 O 1.42898 * 109.46805 * 89.99788 * 22 21 12 24 24 H 0.96998 * 119.99777 * 174.83097 * 1 2 3 25 25 H 1.00904 * 110.99471 * 294.08265 * 11 9 7 26 26 H 1.00901 * 110.99943 * 58.03150 * 11 9 7 27 27 H 1.07998 * 120.11049 * 0.40400 * 16 15 13 28 28 H 1.08001 * 119.66591 * 179.97438 * 17 16 15 29 29 H 1.08002 * 119.73194 * 180.02562 * 18 17 16 30 30 H 1.08002 * 120.11945 * 179.97438 * 19 18 17 31 31 H 1.08997 * 109.47738 * 209.99907 * 22 21 12 32 32 H 1.09003 * 109.46583 * 330.00400 * 22 21 12 33 33 H 0.96705 * 114.00111 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 1.2844 2.7464 0.0006 5 1 3.1031 1.6961 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 1.4942 -2.1124 0.2501 9 6 3.4700 -1.2180 -0.3509 10 1 4.0093 -0.5245 0.2944 11 7 3.6448 -0.8181 -1.7536 12 6 4.0109 -2.6108 -0.1544 13 7 4.2094 -3.5245 -1.1535 14 1 4.0234 -3.3720 -2.0932 15 6 4.7169 -4.6911 -0.6268 16 6 5.0916 -5.9099 -1.1834 17 6 5.5704 -6.9144 -0.3715 18 6 5.6830 -6.7239 0.9991 19 6 5.3208 -5.5351 1.5667 20 6 4.8327 -4.5032 0.7624 21 6 4.3638 -3.1409 1.0272 22 6 4.2914 -2.4631 2.3713 23 8 3.0147 -2.7129 2.9624 24 1 -0.4850 -0.8366 -0.0757 25 1 3.2359 -1.4981 -2.3770 26 1 3.2608 0.1003 -1.9183 27 1 5.0077 -6.0677 -2.2485 28 1 5.8604 -7.8599 -0.8055 29 1 6.0607 -7.5217 1.6214 30 1 5.4108 -5.3943 2.6337 31 1 5.0749 -2.8562 3.0191 32 1 4.4294 -1.3893 2.2445 33 1 2.8971 -2.3053 3.8315 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713813084.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:38 Heat of formation + Delta-G solvation = 3.722089 kcal Electronic energy + Delta-G solvation = -17675.975079 eV Core-core repulsion = 14894.623518 eV Total energy + Delta-G solvation = -2781.351561 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86681 -36.98373 -35.92920 -34.52011 -31.82438 -31.74491 -29.25455 -28.64297 -26.06960 -24.90544 -22.91043 -21.60908 -20.23785 -18.56732 -17.81647 -17.28461 -16.68293 -15.92711 -15.44473 -14.46744 -14.09791 -14.07593 -13.64940 -13.48543 -13.24566 -12.97987 -12.67408 -12.37595 -12.11477 -11.39023 -11.18248 -11.10948 -10.99514 -10.48774 -10.35735 -10.17927 -9.40678 -9.30025 -9.20165 -8.59607 -7.90051 -7.63990 -7.15399 -6.52867 -4.28534 1.55459 2.01045 3.19916 3.22181 3.30237 3.45335 3.64623 4.26986 4.30666 5.05877 5.10752 5.21358 5.28389 5.35903 5.53361 5.61539 5.78734 5.81078 5.85901 6.12624 6.19126 6.25831 6.31726 6.55488 6.66948 6.85870 6.97286 7.18126 7.35941 7.59841 7.65735 8.01214 8.12095 8.21612 8.28717 8.33412 8.78543 9.42766 10.75446 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.031436 B = 0.007355 C = 0.006601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.492471 B = 3806.226960 C = 4240.561913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.035 3.965 3 Si 1.039 2.961 4 H -0.282 1.282 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.615 4.615 8 H 0.063 0.937 9 C 0.230 3.770 10 H 0.060 0.940 11 N -0.861 5.861 12 C 0.183 3.817 13 N -0.584 5.584 14 H 0.413 0.587 15 C 0.084 3.916 16 C -0.127 4.127 17 C -0.118 4.118 18 C -0.153 4.153 19 C -0.078 4.078 20 C -0.080 4.080 21 C -0.211 4.211 22 C 0.166 3.834 23 O -0.557 6.557 24 H 0.271 0.729 25 H 0.319 0.681 26 H 0.339 0.661 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.037 0.963 32 H 0.048 0.952 33 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.491 -6.978 0.661 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.172 4.172 3 Si 0.867 3.133 4 H -0.208 1.208 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.655 4.655 8 H 0.082 0.918 9 C 0.120 3.880 10 H 0.077 0.923 11 N -0.393 5.393 12 C 0.072 3.928 13 N -0.186 5.186 14 H 0.250 0.750 15 C -0.022 4.022 16 C -0.148 4.148 17 C -0.137 4.137 18 C -0.172 4.172 19 C -0.096 4.096 20 C -0.085 4.085 21 C -0.218 4.218 22 C 0.088 3.912 23 O -0.361 6.361 24 H 0.081 0.919 25 H 0.129 0.871 26 H 0.155 0.845 27 H 0.132 0.868 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.133 0.867 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 10.948 -5.659 0.211 12.326 hybrid contribution -0.967 -1.382 -0.016 1.686 sum 9.981 -7.041 0.195 12.216 Atomic orbital electron populations 1.70804 1.06910 1.30741 1.44270 1.25778 0.96266 1.02117 0.93041 0.84081 0.75451 0.76324 0.77418 1.20764 1.20669 1.20018 1.22489 0.92851 0.97066 1.53107 0.91838 1.18208 0.95907 0.85927 0.87929 0.92286 1.59892 1.65361 1.07482 1.06570 1.20652 0.93302 0.92299 0.86497 1.41723 1.56464 1.10734 1.09719 0.74970 1.18256 1.01995 0.88700 0.93292 1.19945 1.04407 0.91233 0.99190 1.20614 1.01510 0.97980 0.93602 1.20479 1.04426 0.97411 0.94905 1.20174 0.98483 0.92170 0.98785 1.19084 1.02882 0.94378 0.92144 1.19425 1.14776 0.94005 0.93550 1.19980 0.84441 0.97035 0.89702 1.86715 1.35323 1.77492 1.36537 0.91887 0.87084 0.84496 0.86814 0.86469 0.86740 0.86728 0.94518 0.93356 0.78957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.70 55.43 0.76 -25.66 16 2 C 0.03 0.95 5.38 -17.82 -0.10 0.86 16 3 Si 1.04 23.45 26.42 -169.99 -4.49 18.96 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.27 -5.58 5.69 56.52 0.32 -5.25 16 7 C -0.62 -16.58 9.05 -34.44 -0.31 -16.89 16 8 H 0.06 1.97 7.99 -52.48 -0.42 1.55 16 9 C 0.23 5.29 2.33 -70.01 -0.16 5.13 16 10 H 0.06 1.38 6.11 -51.93 -0.32 1.07 16 11 N -0.86 -17.75 9.12 -6.65 -0.06 -17.81 16 12 C 0.18 3.99 6.00 -81.77 -0.49 3.50 16 13 N -0.58 -11.18 5.88 -6.95 -0.04 -11.22 16 14 H 0.41 6.90 7.80 -40.82 -0.32 6.59 16 15 C 0.08 1.58 7.28 -83.99 -0.61 0.97 16 16 C -0.13 -1.97 10.08 -39.43 -0.40 -2.37 16 17 C -0.12 -1.66 10.01 -39.54 -0.40 -2.05 16 18 C -0.15 -2.21 9.97 -39.94 -0.40 -2.61 16 19 C -0.08 -1.30 10.05 -39.64 -0.40 -1.70 16 20 C -0.08 -1.57 6.35 -105.14 -0.67 -2.24 16 21 C -0.21 -4.49 5.94 -102.71 -0.61 -5.10 16 22 C 0.17 3.17 7.33 36.01 0.26 3.44 16 23 O -0.56 -11.26 13.64 -35.23 -0.48 -11.74 16 24 H 0.27 8.13 8.73 -40.82 -0.36 7.77 16 25 H 0.32 6.16 7.81 -39.29 -0.31 5.85 16 26 H 0.34 7.12 5.49 -39.29 -0.22 6.90 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.91 7.28 -51.93 -0.38 0.53 16 33 H 0.37 5.37 9.12 45.56 0.42 5.79 16 LS Contribution 279.13 15.07 4.21 4.21 Total: -1.00 -31.79 279.13 -7.27 -39.06 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: -2.89 Total: 23.28 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -4.28 Total: -19.08 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: 0.66 Total: -54.68 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -0.48 Total: -11.74 kcal Atomic # 14 Polarization: 23.45 SS G_CDS: -4.49 Total: 18.96 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -31.79 -7.27 -39.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713813084.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.778 kcal (2) G-P(sol) polarization free energy of solvation -31.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds