Wall clock time and date at job start Mon Mar 30 2020 04:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48490 * 109.47280 * 274.53031 * 3 2 1 5 5 H 1.48502 * 109.47094 * 34.53358 * 3 2 1 6 6 H 1.48498 * 109.46939 * 154.52630 * 3 2 1 7 7 C 1.37872 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99771 * 186.17070 * 7 2 1 9 9 C 1.50701 * 120.00389 * 6.44908 * 7 2 1 10 10 H 1.08996 * 109.46485 * 305.23825 * 9 7 2 11 11 N 1.46892 * 109.47068 * 65.23485 * 9 7 2 12 12 C 1.50695 * 109.47111 * 185.23772 * 9 7 2 13 13 N 1.36832 * 125.03352 * 265.02379 * 12 9 7 14 14 H 0.96998 * 125.06440 * 359.97438 * 13 12 9 15 15 C 1.37689 * 109.87112 * 180.02562 * 13 12 9 16 16 C 1.39133 * 133.50644 * 180.02562 * 15 13 12 17 17 C 1.37745 * 119.78038 * 179.97438 * 16 15 13 18 18 C 1.38835 * 120.66575 * 0.02562 * 17 16 15 19 19 C 1.36620 * 120.52764 * 0.02562 * 18 17 16 20 20 C 1.39640 * 119.76554 * 359.96192 * 19 18 17 21 21 C 1.34238 * 125.03753 * 84.72218 * 12 9 7 22 22 C 1.50703 * 126.50056 * 359.97037 * 21 12 9 23 23 O 1.42901 * 109.47122 * 90.00194 * 22 21 12 24 24 H 0.96996 * 119.99647 * 359.97438 * 1 2 3 25 25 H 1.00904 * 111.00647 * 294.08653 * 11 9 7 26 26 H 1.00897 * 111.00514 * 58.04158 * 11 9 7 27 27 H 1.08007 * 120.10978 * 359.95341 * 16 15 13 28 28 H 1.07994 * 119.66353 * 179.97438 * 17 16 15 29 29 H 1.08001 * 119.73182 * 180.02562 * 18 17 16 30 30 H 1.08006 * 120.11915 * 179.97438 * 19 18 17 31 31 H 1.08995 * 109.47167 * 209.99973 * 22 21 12 32 32 H 1.08997 * 109.46916 * 330.00446 * 22 21 12 33 33 H 0.96699 * 114.00475 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4009 2.1017 -1.3956 5 1 1.4978 2.6231 0.7937 6 1 3.5913 1.4144 0.6022 7 6 2.0045 -1.1940 0.0005 8 1 3.0798 -1.1967 0.1011 9 6 1.2582 -2.4951 -0.1455 10 1 0.4848 -2.5581 0.6200 11 7 0.6372 -2.5568 -1.4752 12 6 2.2182 -3.6456 0.0145 13 7 2.8418 -4.2972 -1.0145 14 1 2.7314 -4.0876 -1.9551 15 6 3.6484 -5.2955 -0.5158 16 6 4.4852 -6.2362 -1.1079 17 6 5.1802 -7.1263 -0.3192 18 6 5.0544 -7.0954 1.0631 19 6 4.2375 -6.1808 1.6653 20 6 3.5238 -5.2689 0.8850 21 6 2.5928 -4.1793 1.1879 22 6 2.1379 -3.7434 2.5569 23 8 0.9651 -4.4728 2.9238 24 1 -0.4849 0.8400 0.0004 25 1 -0.0804 -1.8541 -1.5723 26 1 1.3307 -2.4681 -2.2027 27 1 4.5892 -6.2687 -2.1825 28 1 5.8289 -7.8560 -0.7808 29 1 5.6067 -7.8001 1.6670 30 1 4.1443 -6.1630 2.7412 31 1 2.9284 -3.9383 3.2816 32 1 1.9128 -2.6770 2.5425 33 1 0.6155 -4.2429 3.7956 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000713813086.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:40 Heat of formation + Delta-G solvation = -4.427024 kcal Electronic energy + Delta-G solvation = -17546.864602 eV Core-core repulsion = 14765.159669 eV Total energy + Delta-G solvation = -2781.704933 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.74018 -36.85730 -35.94316 -34.37633 -31.70333 -31.40450 -29.14725 -28.47485 -26.12234 -24.93715 -23.11598 -21.59345 -20.27301 -18.53274 -17.16012 -16.83566 -16.56746 -15.79503 -15.23556 -14.45419 -14.15950 -13.87279 -13.81711 -13.41287 -13.18158 -12.85666 -12.82208 -11.99017 -11.56182 -11.23299 -11.12860 -11.07648 -10.99822 -10.85893 -10.35435 -10.16341 -9.95698 -9.28153 -9.11494 -8.76517 -7.66488 -7.48468 -6.99482 -6.24864 -4.41219 1.64452 2.09664 3.13183 3.21768 3.24552 3.37044 3.76456 4.22921 4.35437 4.98606 5.18142 5.22889 5.37063 5.43883 5.66366 5.80270 5.88557 5.92734 6.15813 6.30193 6.34241 6.44160 6.50405 6.66215 6.92697 7.06964 7.11242 7.30735 7.54412 7.60260 7.81699 7.89174 8.21946 8.27641 8.46082 8.64202 8.78955 9.28906 10.74173 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.006961 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.010866 B = 4021.565021 C = 4338.760099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.071 3.929 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.257 3.743 10 H 0.075 0.925 11 N -0.852 5.852 12 C 0.184 3.816 13 N -0.583 5.583 14 H 0.413 0.587 15 C 0.083 3.917 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.154 4.154 19 C -0.079 4.079 20 C -0.079 4.079 21 C -0.216 4.216 22 C 0.159 3.841 23 O -0.571 6.571 24 H 0.267 0.733 25 H 0.355 0.645 26 H 0.309 0.691 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.038 0.962 32 H 0.065 0.935 33 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.165 -7.798 1.175 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.133 4.133 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.591 4.591 8 H 0.077 0.923 9 C 0.147 3.853 10 H 0.093 0.907 11 N -0.379 5.379 12 C 0.073 3.927 13 N -0.184 5.184 14 H 0.250 0.750 15 C -0.024 4.024 16 C -0.148 4.148 17 C -0.139 4.139 18 C -0.173 4.173 19 C -0.098 4.098 20 C -0.085 4.085 21 C -0.222 4.222 22 C 0.081 3.919 23 O -0.376 6.376 24 H 0.077 0.923 25 H 0.169 0.831 26 H 0.117 0.883 27 H 0.131 0.869 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 5.821 -8.639 0.692 10.440 hybrid contribution 0.794 2.302 -0.068 2.436 sum 6.615 -6.337 0.623 9.181 Atomic orbital electron populations 1.69879 1.05843 1.27504 1.49085 1.25008 0.94920 0.99386 0.93988 0.86486 0.80047 0.82825 0.78168 1.20584 1.20918 1.19679 1.21701 0.94201 0.90611 1.52601 0.92317 1.17929 0.90506 0.86504 0.90379 0.90704 1.59482 1.17046 1.57002 1.04416 1.21122 0.92840 0.93102 0.85634 1.41754 1.38916 1.28744 1.09023 0.74984 1.18274 0.97267 0.93560 0.93347 1.19938 0.99311 0.96598 0.98932 1.20589 1.00524 0.99182 0.93652 1.20457 1.01657 1.00612 0.94610 1.20163 0.96116 0.94615 0.98860 1.19107 0.99773 0.97566 0.92008 1.19402 1.07001 1.02153 0.93683 1.20159 0.85581 0.94981 0.91148 1.86607 1.45335 1.66719 1.38930 0.92278 0.83063 0.88271 0.86903 0.86603 0.86873 0.86837 0.94417 0.91734 0.78767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.37 12.17 55.43 0.67 -22.70 16 2 C 0.07 1.82 5.34 -17.82 -0.10 1.73 16 3 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.55 -14.12 8.65 -34.44 -0.30 -14.42 16 8 H 0.06 1.55 7.75 -52.48 -0.41 1.14 16 9 C 0.26 6.20 2.51 -70.02 -0.18 6.02 16 10 H 0.08 2.04 7.91 -51.93 -0.41 1.63 16 11 N -0.85 -18.99 9.03 -6.66 -0.06 -19.05 16 12 C 0.18 4.10 5.98 -81.77 -0.49 3.61 16 13 N -0.58 -11.39 5.90 -6.95 -0.04 -11.43 16 14 H 0.41 7.12 8.07 -40.82 -0.33 6.79 16 15 C 0.08 1.57 7.28 -83.99 -0.61 0.96 16 16 C -0.13 -2.02 10.08 -39.43 -0.40 -2.42 16 17 C -0.12 -1.73 10.01 -39.54 -0.40 -2.13 16 18 C -0.15 -2.28 9.97 -39.95 -0.40 -2.68 16 19 C -0.08 -1.35 10.05 -39.64 -0.40 -1.75 16 20 C -0.08 -1.59 6.35 -105.14 -0.67 -2.26 16 21 C -0.22 -4.69 5.94 -102.71 -0.61 -5.30 16 22 C 0.16 3.09 7.18 36.01 0.26 3.35 16 23 O -0.57 -10.77 13.64 -35.23 -0.48 -11.25 16 24 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 25 H 0.35 8.41 7.80 -39.29 -0.31 8.11 16 26 H 0.31 6.33 8.14 -39.29 -0.32 6.01 16 27 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.11 1.74 8.06 -52.48 -0.42 1.32 16 31 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 1.33 7.83 -51.93 -0.41 0.93 16 33 H 0.37 4.86 9.12 45.56 0.42 5.27 16 LS Contribution 286.27 15.07 4.31 4.31 Total: -1.00 -29.19 286.27 -7.91 -37.10 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -3.01 Total: 23.20 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -4.28 Total: -15.28 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: 0.57 Total: -53.18 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.48 Total: -11.25 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.19 -7.91 -37.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713813086.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.668 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds