Wall clock time and date at job start Mon Mar 30 2020 04:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99906 * 2 1 4 4 H 1.48490 * 109.47280 * 274.53031 * 3 2 1 5 5 H 1.48502 * 109.47094 * 34.53358 * 3 2 1 6 6 H 1.48498 * 109.46939 * 154.52630 * 3 2 1 7 7 C 1.37872 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99771 * 186.17070 * 7 2 1 9 9 C 1.50701 * 120.00389 * 6.44908 * 7 2 1 10 10 H 1.08996 * 109.46485 * 305.23825 * 9 7 2 11 11 N 1.46892 * 109.47068 * 65.23485 * 9 7 2 12 12 C 1.50695 * 109.47111 * 185.23772 * 9 7 2 13 13 N 1.36832 * 125.03352 * 265.02379 * 12 9 7 14 14 H 0.96998 * 125.06440 * 359.97438 * 13 12 9 15 15 C 1.37689 * 109.87112 * 180.02562 * 13 12 9 16 16 C 1.39133 * 133.50644 * 180.02562 * 15 13 12 17 17 C 1.37745 * 119.78038 * 179.97438 * 16 15 13 18 18 C 1.38835 * 120.66575 * 0.02562 * 17 16 15 19 19 C 1.36620 * 120.52764 * 0.02562 * 18 17 16 20 20 C 1.39640 * 119.76554 * 359.96192 * 19 18 17 21 21 C 1.34238 * 125.03753 * 84.72218 * 12 9 7 22 22 C 1.50703 * 126.50056 * 359.97037 * 21 12 9 23 23 O 1.42901 * 109.47122 * 90.00194 * 22 21 12 24 24 H 0.96996 * 119.99647 * 359.97438 * 1 2 3 25 25 H 1.00904 * 111.00647 * 294.08653 * 11 9 7 26 26 H 1.00897 * 111.00514 * 58.04158 * 11 9 7 27 27 H 1.08007 * 120.10978 * 359.95341 * 16 15 13 28 28 H 1.07994 * 119.66353 * 179.97438 * 17 16 15 29 29 H 1.08001 * 119.73182 * 180.02562 * 18 17 16 30 30 H 1.08006 * 120.11915 * 179.97438 * 19 18 17 31 31 H 1.08995 * 109.47167 * 209.99973 * 22 21 12 32 32 H 1.08997 * 109.46916 * 330.00446 * 22 21 12 33 33 H 0.96699 * 114.00475 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4009 2.1017 -1.3956 5 1 1.4978 2.6231 0.7937 6 1 3.5913 1.4144 0.6022 7 6 2.0045 -1.1940 0.0005 8 1 3.0798 -1.1967 0.1011 9 6 1.2582 -2.4951 -0.1455 10 1 0.4848 -2.5581 0.6200 11 7 0.6372 -2.5568 -1.4752 12 6 2.2182 -3.6456 0.0145 13 7 2.8418 -4.2972 -1.0145 14 1 2.7314 -4.0876 -1.9551 15 6 3.6484 -5.2955 -0.5158 16 6 4.4852 -6.2362 -1.1079 17 6 5.1802 -7.1263 -0.3192 18 6 5.0544 -7.0954 1.0631 19 6 4.2375 -6.1808 1.6653 20 6 3.5238 -5.2689 0.8850 21 6 2.5928 -4.1793 1.1879 22 6 2.1379 -3.7434 2.5569 23 8 0.9651 -4.4728 2.9238 24 1 -0.4849 0.8400 0.0004 25 1 -0.0804 -1.8541 -1.5723 26 1 1.3307 -2.4681 -2.2027 27 1 4.5892 -6.2687 -2.1825 28 1 5.8289 -7.8560 -0.7808 29 1 5.6067 -7.8001 1.6670 30 1 4.1443 -6.1630 2.7412 31 1 2.9284 -3.9383 3.2816 32 1 1.9128 -2.6770 2.5425 33 1 0.6155 -4.2429 3.7956 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000713813086.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:40 Heat of formation + Delta-G solvation = -26.598548 kcal Electronic energy + Delta-G solvation = -17547.826032 eV Core-core repulsion = 14765.159669 eV Total energy + Delta-G solvation = -2782.666363 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.17040 -38.25027 -37.43543 -36.16522 -33.36504 -33.06763 -30.50159 -29.91020 -27.98881 -26.51975 -24.73780 -22.94400 -21.74585 -20.07227 -18.73192 -18.57224 -18.17025 -17.17481 -16.91757 -16.19823 -15.62231 -15.34665 -15.30555 -14.79874 -14.66529 -14.55398 -14.28067 -13.55955 -13.37122 -12.95883 -12.82594 -12.57317 -12.40226 -12.37111 -11.97475 -11.84792 -11.60621 -10.80340 -10.77373 -10.45616 -9.43757 -8.94830 -8.51206 -8.16720 -6.44821 0.33130 0.81989 1.34504 1.37934 1.47530 1.79225 2.29060 2.38401 2.99603 3.07326 3.84860 3.85835 4.00588 4.20412 4.33097 4.38778 4.48392 4.60993 4.65646 4.77065 4.89373 5.05760 5.07485 5.29859 5.34961 5.56915 5.67913 5.78371 5.86188 5.96486 6.10425 6.36042 6.56623 6.67687 6.79406 6.92385 7.03227 7.28767 8.76600 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026635 B = 0.006961 C = 0.006452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.010866 B = 4021.565021 C = 4338.760099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.032 3.968 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.275 1.275 7 C -0.560 4.560 8 H 0.045 0.955 9 C 0.270 3.730 10 H 0.033 0.967 11 N -0.843 5.843 12 C 0.150 3.850 13 N -0.580 5.580 14 H 0.419 0.581 15 C 0.065 3.935 16 C -0.134 4.134 17 C -0.107 4.107 18 C -0.146 4.146 19 C -0.093 4.093 20 C -0.114 4.114 21 C -0.234 4.234 22 C 0.163 3.837 23 O -0.588 6.588 24 H 0.270 0.730 25 H 0.346 0.654 26 H 0.320 0.680 27 H 0.139 0.861 28 H 0.158 0.842 29 H 0.150 0.850 30 H 0.125 0.875 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.260 -9.290 0.907 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.170 4.170 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.200 1.200 7 C -0.599 4.599 8 H 0.064 0.936 9 C 0.159 3.841 10 H 0.051 0.949 11 N -0.370 5.370 12 C 0.038 3.962 13 N -0.183 5.183 14 H 0.257 0.743 15 C -0.041 4.041 16 C -0.155 4.155 17 C -0.126 4.126 18 C -0.165 4.165 19 C -0.111 4.111 20 C -0.119 4.119 21 C -0.241 4.241 22 C 0.086 3.914 23 O -0.395 6.395 24 H 0.079 0.921 25 H 0.159 0.841 26 H 0.130 0.870 27 H 0.157 0.843 28 H 0.175 0.825 29 H 0.168 0.832 30 H 0.143 0.857 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 7.919 -10.142 0.424 12.875 hybrid contribution 0.207 2.607 0.058 2.616 sum 8.125 -7.535 0.483 11.092 Atomic orbital electron populations 1.69971 1.06916 1.28264 1.49549 1.25667 0.95621 1.02135 0.93592 0.85548 0.78585 0.79211 0.78313 1.19851 1.20515 1.19958 1.21798 0.93559 0.91796 1.52798 0.93644 1.17503 0.89693 0.87174 0.89725 0.94908 1.59409 1.17004 1.56376 1.04199 1.20809 0.94377 0.93976 0.87003 1.41625 1.38991 1.28871 1.08775 0.74286 1.18718 0.97908 0.94077 0.93414 1.20361 0.98579 0.95900 1.00654 1.21150 0.99355 0.98573 0.93533 1.20936 1.00307 0.99867 0.95393 1.20450 0.96415 0.94709 0.99554 1.19363 1.00924 0.98447 0.93171 1.19870 1.07289 1.02767 0.94154 1.20075 0.86394 0.93576 0.91373 1.86541 1.45388 1.66664 1.40951 0.92095 0.84071 0.87048 0.84342 0.82491 0.83223 0.85713 0.91931 0.94116 0.76174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.09 12.17 21.45 0.26 -48.83 16 2 C 0.03 1.66 5.34 84.65 0.45 2.11 16 3 Si 0.96 41.72 29.54 68.60 2.03 43.74 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.56 -29.65 8.65 25.60 0.22 -29.43 16 8 H 0.05 2.48 7.75 -2.91 -0.02 2.46 16 9 C 0.27 13.62 2.51 43.42 0.11 13.73 16 10 H 0.03 1.91 7.91 -2.39 -0.02 1.90 16 11 N -0.84 -38.87 9.03 -174.98 -1.58 -40.45 16 12 C 0.15 6.91 5.98 40.86 0.24 7.16 16 13 N -0.58 -22.97 5.90 -175.92 -1.04 -24.01 16 14 H 0.42 14.61 8.07 -92.71 -0.75 13.86 16 15 C 0.07 2.43 7.28 39.03 0.28 2.71 16 16 C -0.13 -3.87 10.08 22.37 0.23 -3.65 16 17 C -0.11 -2.59 10.01 22.30 0.22 -2.37 16 18 C -0.15 -3.72 9.97 22.03 0.22 -3.50 16 19 C -0.09 -2.98 10.05 22.23 0.22 -2.76 16 20 C -0.11 -4.53 6.35 -20.20 -0.13 -4.66 16 21 C -0.23 -10.42 5.94 -18.63 -0.11 -10.53 16 22 C 0.16 6.57 7.18 71.24 0.51 7.08 16 23 O -0.59 -22.62 13.64 -148.98 -2.03 -24.66 16 24 H 0.27 13.81 8.31 -92.71 -0.77 13.04 16 25 H 0.35 16.98 7.80 -89.69 -0.70 16.28 16 26 H 0.32 13.42 8.14 -89.70 -0.73 12.69 16 27 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 28 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.12 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.04 1.79 7.83 -2.39 -0.02 1.77 16 33 H 0.39 10.41 9.12 -74.06 -0.68 9.74 16 Total: -1.00 -64.29 286.27 -1.56 -65.86 By element: Atomic # 1 Polarization: 54.14 SS G_CDS: -1.68 Total: 52.46 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 2.48 Total: -24.11 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -2.36 Total: -113.29 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -2.03 Total: -24.66 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -64.29 -1.56 -65.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000713813086.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.260 kcal (2) G-P(sol) polarization free energy of solvation -64.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds