Wall clock time and date at job start Mon Mar 30 2020 03:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48497 * 109.46847 * 270.00070 * 3 2 1 5 5 H 1.48502 * 109.46888 * 29.99755 * 3 2 1 6 6 H 1.48493 * 109.47164 * 149.99639 * 3 2 1 7 7 C 1.37882 * 119.99434 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00432 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99802 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47491 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99747 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00262 * 179.72204 * 11 10 9 14 14 C 1.45202 * 116.99836 * 180.27336 * 13 11 10 15 15 C 1.52994 * 109.46919 * 180.02562 * 14 13 11 16 16 F 1.39902 * 110.75242 * 59.30133 * 15 14 13 17 17 C 1.55306 * 110.84843 * 182.77650 * 15 14 13 18 18 C 1.55205 * 100.82944 * 152.17967 * 17 15 14 19 19 O 1.43647 * 105.26175 * 323.81877 * 18 17 15 20 20 C 1.43240 * 109.97001 * 24.28088 * 19 18 17 21 21 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 60.00101 * 9 7 2 23 23 H 1.08994 * 109.46990 * 300.00247 * 9 7 2 24 24 H 1.09004 * 109.47066 * 60.00203 * 10 9 7 25 25 H 1.09000 * 109.47234 * 300.00712 * 10 9 7 26 26 H 1.08998 * 109.47630 * 300.00638 * 14 13 11 27 27 H 1.09004 * 109.46770 * 60.01042 * 14 13 11 28 28 H 1.09004 * 111.12395 * 270.24327 * 17 15 14 29 29 H 1.08999 * 111.12772 * 34.40231 * 17 15 14 30 30 H 1.08992 * 110.37547 * 204.79973 * 18 17 15 31 31 H 1.09001 * 110.21139 * 82.74855 * 18 17 15 32 32 H 1.09005 * 109.83312 * 238.77727 * 20 19 18 33 33 H 1.09002 * 109.90380 * 117.84764 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5115 -1.1943 0.0011 10 6 4.0214 -2.6368 0.0023 11 6 5.5283 -2.6369 0.0035 12 8 6.1326 -1.5905 0.0039 13 8 6.1994 -3.7994 0.0103 14 6 7.6494 -3.7235 0.0172 15 6 8.2340 -5.1373 0.0237 16 9 7.8118 -5.8535 -1.1015 17 6 9.7845 -5.0939 0.1015 18 6 10.0790 -6.4446 0.8070 19 8 9.0075 -6.6217 1.7471 20 6 7.8568 -5.8820 1.3224 21 1 -0.4849 0.8401 -0.0004 22 1 3.8745 -0.6802 0.8912 23 1 3.8751 -0.6806 -0.8888 24 1 3.6583 -3.1512 -0.8875 25 1 3.6576 -3.1500 0.8924 26 1 7.9898 -3.1939 -0.8726 27 1 7.9809 -3.1888 0.9074 28 1 10.2271 -5.0623 -0.8941 29 1 10.1242 -4.2536 0.7071 30 1 11.0356 -6.4002 1.3276 31 1 10.0821 -7.2565 0.0797 32 1 7.5742 -5.1636 2.0919 33 1 7.0278 -6.5633 1.1304 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000813101289.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:52 Heat of formation + Delta-G solvation = -190.742796 kcal Electronic energy + Delta-G solvation = -17794.941908 eV Core-core repulsion = 14542.095741 eV Total energy + Delta-G solvation = -3252.846167 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.03628 -40.25221 -39.28984 -36.47365 -33.67952 -32.93895 -31.46360 -30.14626 -27.21604 -25.84120 -23.19053 -21.90389 -21.11746 -19.87796 -17.70970 -17.60002 -17.04278 -16.65045 -16.27710 -15.78014 -15.50765 -14.94851 -14.58478 -14.29941 -14.12572 -13.70099 -13.42660 -12.82180 -12.59712 -12.46480 -12.22770 -12.02739 -11.59112 -11.39184 -11.10049 -11.05265 -10.65903 -10.38999 -10.21043 -9.99549 -9.97453 -9.75547 -9.29438 -8.58564 -6.09887 -4.10093 2.56167 2.65093 3.31849 3.34022 3.38970 3.47255 3.65840 3.90465 4.17044 4.24592 4.43403 4.50048 4.70739 4.96789 5.04072 5.17734 5.22934 5.24680 5.33163 5.35139 5.50146 5.66162 5.93764 5.95879 6.35943 6.47594 6.64854 7.18734 7.26044 7.66907 8.06532 8.43619 8.92366 9.51591 11.02688 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.054686 B = 0.004126 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.893057 B = 6784.184864 C = 6965.317884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.071 3.929 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.095 4.095 11 C 0.460 3.540 12 O -0.509 6.509 13 O -0.357 6.357 14 C 0.052 3.948 15 C 0.090 3.910 16 F -0.186 7.186 17 C -0.173 4.173 18 C 0.051 3.949 19 O -0.377 6.377 20 C 0.037 3.963 21 H 0.265 0.735 22 H 0.026 0.974 23 H 0.021 0.979 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.155 -11.290 0.958 23.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.131 4.131 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.186 1.186 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.132 4.132 11 C 0.304 3.696 12 O -0.396 6.396 13 O -0.275 6.275 14 C -0.023 4.023 15 C 0.072 3.928 16 F -0.167 7.167 17 C -0.211 4.211 18 C -0.025 4.025 19 O -0.297 6.297 20 C -0.039 4.039 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.040 0.960 24 H 0.119 0.881 25 H 0.119 0.881 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 20.202 -11.003 1.116 23.031 hybrid contribution 0.436 1.108 -0.405 1.258 sum 20.638 -9.895 0.711 22.898 Atomic orbital electron populations 1.69905 1.06276 1.27104 1.50493 1.24957 0.94728 0.99198 0.94199 0.86799 0.80543 0.83429 0.78788 1.20152 1.21272 1.18647 1.21022 0.88773 0.94845 1.51963 0.90598 1.19491 0.97003 0.89518 0.97943 1.21577 0.82950 1.03657 1.05066 1.24847 0.92791 0.80691 0.71281 1.90631 1.70591 1.32983 1.45414 1.86604 1.19471 1.36556 1.84891 1.23345 0.79645 0.94790 1.04555 1.22456 0.94849 0.90722 0.84800 1.92923 1.91228 1.79411 1.53115 1.23883 0.92543 1.00404 1.04254 1.23464 0.91566 0.95404 0.92051 1.88451 1.22296 1.71202 1.47711 1.23766 0.89789 0.96099 0.94291 0.92559 0.95585 0.96030 0.88126 0.88105 0.89740 0.89143 0.87910 0.87963 0.88718 0.91398 0.88969 0.89091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.47 6.54 56.52 0.37 -6.10 16 7 C -0.53 -14.77 9.66 -34.44 -0.33 -15.11 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.14 16 10 C -0.10 -1.82 5.75 -27.89 -0.16 -1.98 16 11 C 0.46 8.29 7.96 36.00 0.29 8.58 16 12 O -0.51 -10.46 15.73 -18.76 -0.30 -10.75 16 13 O -0.36 -5.43 9.99 -39.26 -0.39 -5.83 16 14 C 0.05 0.62 4.57 37.15 0.17 0.79 16 15 C 0.09 0.94 1.35 -88.67 -0.12 0.82 16 16 F -0.19 -2.36 16.95 2.25 0.04 -2.32 16 17 C -0.17 -1.24 6.45 -24.34 -0.16 -1.40 16 18 C 0.05 0.39 7.78 38.33 0.30 0.69 16 19 O -0.38 -4.04 11.36 -35.23 -0.40 -4.44 16 20 C 0.04 0.39 7.04 37.88 0.27 0.66 16 21 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 22 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 23 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 24 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 25 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 26 H 0.08 1.00 8.13 -51.93 -0.42 0.57 16 27 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 28 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.10 0.59 8.04 -51.93 -0.42 0.17 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.90 7.80 -51.93 -0.40 0.49 16 33 H 0.09 0.98 8.11 -51.93 -0.42 0.55 16 LS Contribution 287.45 15.07 4.33 4.33 Total: -1.00 -32.70 287.45 -5.10 -37.80 By element: Atomic # 1 Polarization: 0.25 SS G_CDS: -4.55 Total: -4.30 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 0.06 Total: -5.13 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: -1.09 Total: -21.02 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -32.70 -5.10 -37.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813101289.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.939 kcal (2) G-P(sol) polarization free energy of solvation -32.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds