Wall clock time and date at job start Mon Mar 30 2020 03:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48497 * 109.46847 * 270.00070 * 3 2 1 5 5 H 1.48502 * 109.46888 * 29.99755 * 3 2 1 6 6 H 1.48493 * 109.47164 * 149.99639 * 3 2 1 7 7 C 1.37882 * 119.99434 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00432 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99802 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47491 * 180.02562 * 10 9 7 12 12 O 1.20833 * 119.99747 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00262 * 179.72204 * 11 10 9 14 14 C 1.45202 * 116.99836 * 180.27336 * 13 11 10 15 15 C 1.52994 * 109.46919 * 180.02562 * 14 13 11 16 16 F 1.39902 * 110.75242 * 59.30133 * 15 14 13 17 17 C 1.55306 * 110.84843 * 182.77650 * 15 14 13 18 18 C 1.55205 * 100.82944 * 152.17967 * 17 15 14 19 19 O 1.43647 * 105.26175 * 323.81877 * 18 17 15 20 20 C 1.43240 * 109.97001 * 24.28088 * 19 18 17 21 21 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 60.00101 * 9 7 2 23 23 H 1.08994 * 109.46990 * 300.00247 * 9 7 2 24 24 H 1.09004 * 109.47066 * 60.00203 * 10 9 7 25 25 H 1.09000 * 109.47234 * 300.00712 * 10 9 7 26 26 H 1.08998 * 109.47630 * 300.00638 * 14 13 11 27 27 H 1.09004 * 109.46770 * 60.01042 * 14 13 11 28 28 H 1.09004 * 111.12395 * 270.24327 * 17 15 14 29 29 H 1.08999 * 111.12772 * 34.40231 * 17 15 14 30 30 H 1.08992 * 110.37547 * 204.79973 * 18 17 15 31 31 H 1.09001 * 110.21139 * 82.74855 * 18 17 15 32 32 H 1.09005 * 109.83312 * 238.77727 * 20 19 18 33 33 H 1.09002 * 109.90380 * 117.84764 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 1.4644 -2.1295 0.0005 9 6 3.5115 -1.1943 0.0011 10 6 4.0214 -2.6368 0.0023 11 6 5.5283 -2.6369 0.0035 12 8 6.1326 -1.5905 0.0039 13 8 6.1994 -3.7994 0.0103 14 6 7.6494 -3.7235 0.0172 15 6 8.2340 -5.1373 0.0237 16 9 7.8118 -5.8535 -1.1015 17 6 9.7845 -5.0939 0.1015 18 6 10.0790 -6.4446 0.8070 19 8 9.0075 -6.6217 1.7471 20 6 7.8568 -5.8820 1.3224 21 1 -0.4849 0.8401 -0.0004 22 1 3.8745 -0.6802 0.8912 23 1 3.8751 -0.6806 -0.8888 24 1 3.6583 -3.1512 -0.8875 25 1 3.6576 -3.1500 0.8924 26 1 7.9898 -3.1939 -0.8726 27 1 7.9809 -3.1888 0.9074 28 1 10.2271 -5.0623 -0.8941 29 1 10.1242 -4.2536 0.7071 30 1 11.0356 -6.4002 1.3276 31 1 10.0821 -7.2565 0.0797 32 1 7.5742 -5.1636 2.0919 33 1 7.0278 -6.5633 1.1304 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813101289.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:52 Heat of formation + Delta-G solvation = -211.890297 kcal Electronic energy + Delta-G solvation = -17795.858933 eV Core-core repulsion = 14542.095741 eV Total energy + Delta-G solvation = -3253.763192 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 246.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.93363 -41.58931 -40.05710 -37.79979 -35.64557 -33.84619 -33.34995 -30.87647 -28.72709 -27.14027 -24.11471 -23.36865 -21.96533 -21.44884 -19.38460 -18.61655 -18.28703 -17.88291 -17.46977 -16.87531 -16.32639 -16.26486 -15.88022 -15.59422 -15.40859 -14.87935 -14.74565 -14.23381 -13.94768 -13.82162 -13.36414 -12.94046 -12.86698 -12.65637 -12.33950 -12.20152 -12.09970 -12.00932 -11.79871 -11.67097 -11.47231 -11.37616 -10.79165 -10.68177 -8.32003 -6.36622 1.14137 1.35004 1.36936 1.47143 1.50365 2.34535 2.62952 2.90889 3.03493 3.09992 3.35560 3.45491 3.81778 3.94314 4.10342 4.18186 4.21355 4.33333 4.37628 4.57146 4.72210 4.73558 4.75673 4.82741 4.95736 5.18488 5.29304 5.35436 5.57682 5.79084 6.20749 6.65345 6.74333 7.28643 8.83655 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.054686 B = 0.004126 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.893057 B = 6784.184864 C = 6965.317884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.533 4.533 8 H 0.050 0.950 9 C 0.002 3.998 10 C -0.093 4.093 11 C 0.473 3.527 12 O -0.536 6.536 13 O -0.355 6.355 14 C 0.045 3.955 15 C 0.086 3.914 16 F -0.202 7.202 17 C -0.163 4.163 18 C 0.045 3.955 19 O -0.396 6.396 20 C 0.036 3.964 21 H 0.268 0.732 22 H 0.020 0.980 23 H 0.017 0.983 24 H 0.112 0.888 25 H 0.116 0.884 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.483 -11.133 1.062 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.765 3.235 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.571 4.571 8 H 0.068 0.932 9 C -0.036 4.036 10 C -0.130 4.130 11 C 0.318 3.682 12 O -0.425 6.425 13 O -0.272 6.272 14 C -0.029 4.029 15 C 0.067 3.933 16 F -0.182 7.182 17 C -0.200 4.200 18 C -0.031 4.031 19 O -0.316 6.316 20 C -0.041 4.041 21 H 0.077 0.923 22 H 0.038 0.962 23 H 0.035 0.965 24 H 0.130 0.870 25 H 0.134 0.866 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 22.548 -10.880 1.217 25.065 hybrid contribution -0.264 0.926 -0.436 1.057 sum 22.284 -9.954 0.781 24.418 Atomic orbital electron populations 1.70028 1.07943 1.28239 1.52118 1.25830 0.95512 1.03012 0.94078 0.85794 0.79359 0.79155 0.79218 1.19299 1.20490 1.17975 1.21349 0.90977 0.93889 1.50906 0.93165 1.19329 0.94321 0.92678 0.97245 1.21360 0.84402 1.00764 1.06492 1.24320 0.92273 0.80915 0.70714 1.90622 1.71035 1.33991 1.46871 1.86557 1.21667 1.34814 1.84182 1.23697 0.77331 0.96245 1.05600 1.22643 0.97019 0.89442 0.84146 1.92894 1.91631 1.79733 1.53974 1.23939 0.89652 1.00877 1.05536 1.23705 0.91676 0.95677 0.92039 1.88433 1.22940 1.71468 1.48725 1.23747 0.89770 0.96058 0.94519 0.92285 0.96173 0.96498 0.86982 0.86629 0.89333 0.87530 0.86378 0.86076 0.86300 0.91292 0.88421 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.25 13.96 21.45 0.30 -57.95 16 2 C 0.01 0.79 5.47 84.66 0.46 1.25 16 3 Si 0.94 45.02 27.47 68.60 1.88 46.90 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.26 -11.89 6.54 99.48 0.65 -11.24 16 7 C -0.53 -30.02 9.66 25.60 0.25 -29.78 16 8 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 9 C 0.00 0.09 3.33 29.85 0.10 0.19 16 10 C -0.09 -3.44 5.75 29.85 0.17 -3.27 16 11 C 0.47 16.28 7.96 71.23 0.57 16.85 16 12 O -0.54 -21.10 15.73 21.94 0.35 -20.75 16 13 O -0.36 -10.17 9.99 -51.41 -0.51 -10.69 16 14 C 0.05 0.99 4.57 71.98 0.33 1.32 16 15 C 0.09 1.62 1.35 -9.53 -0.01 1.60 16 16 F -0.20 -4.83 16.95 44.97 0.76 -4.06 16 17 C -0.16 -1.85 6.45 32.14 0.21 -1.64 16 18 C 0.04 0.56 7.78 72.74 0.57 1.13 16 19 O -0.40 -7.81 11.36 -148.98 -1.69 -9.50 16 20 C 0.04 0.70 7.04 72.45 0.51 1.21 16 21 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 22 H 0.02 0.97 7.16 -2.38 -0.02 0.95 16 23 H 0.02 0.80 7.53 -2.39 -0.02 0.79 16 24 H 0.11 3.89 8.14 -2.38 -0.02 3.87 16 25 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 26 H 0.09 1.89 8.13 -2.39 -0.02 1.87 16 27 H 0.11 2.00 8.11 -2.38 -0.02 1.98 16 28 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.12 0.94 8.04 -2.39 -0.02 0.92 16 30 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.10 1.75 7.80 -2.38 -0.02 1.73 16 33 H 0.08 1.70 8.11 -2.39 -0.02 1.68 16 Total: -1.00 -69.55 287.45 5.28 -64.27 By element: Atomic # 1 Polarization: 1.88 SS G_CDS: 1.04 Total: 2.93 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 3.15 Total: -11.14 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.30 Total: -57.95 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -1.86 Total: -40.94 kcal Atomic # 9 Polarization: -4.83 SS G_CDS: 0.76 Total: -4.06 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.90 kcal Total: -69.55 5.28 -64.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813101289.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.621 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds