Wall clock time and date at job start Mon Mar 30 2020 04:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48498 * 109.47398 * 240.00274 * 3 2 1 5 5 H 1.48497 * 109.47282 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47056 * 120.00516 * 3 2 1 7 7 C 1.37879 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.53505 * 114.20197 * 180.02562 * 9 7 2 11 11 N 1.47069 * 87.98218 * 220.34320 * 10 9 7 12 12 C 1.34773 * 136.05714 * 207.08308 * 11 10 9 13 13 O 1.21787 * 119.99853 * 359.72762 * 12 11 10 14 14 C 1.41520 * 120.00240 * 180.02562 * 12 11 10 15 15 C 1.35617 * 120.00067 * 186.28334 * 14 12 11 16 16 C 1.41663 * 120.00058 * 8.10573 * 15 14 12 17 17 C 1.38284 * 126.26159 * 217.62381 * 16 15 14 18 18 C 1.39783 * 107.08219 * 179.90451 * 17 16 15 19 19 C 1.35505 * 107.90791 * 0.36317 * 18 17 16 20 20 N 1.35751 * 108.91370 * 359.77257 * 19 18 17 21 21 H 0.96997 * 125.69535 * 180.02562 * 20 19 18 22 22 C 1.47065 * 87.88483 * 27.34109 * 11 10 9 23 23 H 0.97005 * 120.00185 * 359.97438 * 1 2 3 24 24 H 1.08998 * 113.28357 * 313.06339 * 9 7 2 25 25 H 1.08995 * 113.46460 * 105.56526 * 10 9 7 26 26 H 1.08997 * 113.46770 * 335.12260 * 10 9 7 27 27 H 1.08007 * 119.99529 * 6.29097 * 14 12 11 28 28 H 1.08003 * 119.99731 * 188.10517 * 15 14 12 29 29 H 1.08006 * 126.45751 * 0.03888 * 17 16 15 30 30 H 1.07998 * 126.04694 * 180.13368 * 18 17 16 31 31 H 1.08000 * 125.54158 * 179.73845 * 19 18 17 32 32 H 1.09006 * 113.46868 * 87.43997 * 22 11 10 33 33 H 1.08998 * 113.47041 * 217.87517 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2099 -4.3574 -0.9520 12 6 0.8354 -5.6113 -1.2743 13 8 1.3361 -6.5625 -0.7017 14 6 -0.1350 -5.8230 -2.2824 15 6 -0.6054 -7.0727 -2.5191 16 6 -0.2586 -8.1365 -1.6502 17 6 0.0104 -9.4412 -2.0213 18 6 0.3074 -10.1476 -0.8523 19 6 0.2099 -9.2877 0.1904 20 7 -0.1335 -8.0618 -0.2809 21 1 -0.2679 -7.2660 0.2571 22 6 0.8643 -3.0005 -1.4016 23 1 -0.4851 0.8401 0.0004 24 1 0.4438 -2.5305 0.7313 25 1 2.1851 -4.2531 0.9626 26 1 3.1384 -3.5657 -0.4211 27 1 -0.5008 -4.9892 -2.8633 28 1 -1.2445 -7.2570 -3.3700 29 1 -0.0041 -9.8388 -3.0254 30 1 0.5651 -11.1946 -0.7906 31 1 0.3776 -9.5372 1.2277 32 1 1.5153 -2.6259 -2.1916 33 1 -0.1937 -2.8758 -1.6322 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:38 Heat of formation + Delta-G solvation = 86.602155 kcal Electronic energy + Delta-G solvation = -17108.569319 eV Core-core repulsion = 14330.811707 eV Total energy + Delta-G solvation = -2777.757612 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.95075 -39.42567 -37.28664 -33.42552 -32.75008 -30.61014 -29.71253 -27.73109 -25.38858 -25.02119 -22.87976 -20.71463 -20.06404 -19.71714 -18.42239 -17.27762 -16.71698 -16.23545 -14.81015 -14.70070 -14.58327 -14.11583 -13.68798 -13.35752 -13.08698 -12.97095 -12.33959 -12.18739 -11.99720 -11.71119 -11.57542 -11.34580 -10.98908 -10.86503 -10.39543 -9.74898 -9.63542 -9.28343 -9.09595 -8.63341 -8.50757 -7.86725 -7.36004 -6.23459 -4.29380 0.97934 2.87411 3.22003 3.25448 3.27640 3.29768 3.60592 3.79550 3.84072 4.29600 5.04269 5.11507 5.21508 5.40817 5.60828 5.65383 5.76566 5.94702 6.10000 6.11543 6.17275 6.28639 6.37158 6.48939 6.52067 6.54896 6.65723 6.81384 7.23294 7.41318 7.48403 7.73829 7.91360 8.12086 8.46542 8.71967 8.74554 9.37775 10.86227 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.061245 B = 0.004445 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.067939 B = 6297.102272 C = 6475.446584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.069 3.931 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.520 4.520 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.098 3.902 11 N -0.635 5.635 12 C 0.552 3.448 13 O -0.568 6.568 14 C -0.221 4.221 15 C 0.002 3.998 16 C 0.026 3.974 17 C -0.169 4.169 18 C -0.220 4.220 19 C 0.008 3.992 20 N -0.494 5.494 21 H 0.416 0.584 22 C 0.096 3.904 23 H 0.265 0.735 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.073 0.927 27 H 0.129 0.871 28 H 0.140 0.860 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.157 0.843 32 H 0.075 0.925 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.533 -11.717 -3.281 12.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.724 3.276 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.558 4.558 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.024 4.024 11 N -0.366 5.366 12 C 0.346 3.654 13 O -0.452 6.452 14 C -0.242 4.242 15 C -0.019 4.019 16 C -0.087 4.087 17 C -0.194 4.194 18 C -0.244 4.244 19 C -0.130 4.130 20 N -0.086 5.086 21 H 0.256 0.744 22 C -0.026 4.026 23 H 0.075 0.925 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.147 0.853 28 H 0.158 0.842 29 H 0.151 0.849 30 H 0.148 0.852 31 H 0.174 0.826 32 H 0.093 0.907 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.528 -12.090 -2.937 12.696 hybrid contribution 0.489 1.403 0.001 1.486 sum -2.039 -10.688 -2.936 11.269 Atomic orbital electron populations 1.69936 1.06098 1.27320 1.48930 1.25024 0.94868 0.99427 0.94130 0.86581 0.79600 0.82552 0.78878 1.20024 1.21177 1.20018 1.20877 0.93004 0.89574 1.52306 0.91877 1.20375 0.94709 0.91181 0.92071 1.23337 0.94468 0.93235 0.91345 1.50114 1.41993 1.05036 1.39503 1.16838 0.83881 0.81381 0.83305 1.90845 1.59324 1.39493 1.55561 1.22141 1.01004 0.98315 1.02772 1.20738 0.94694 0.90462 0.96032 1.17974 1.12123 0.94992 0.83611 1.21203 1.07964 0.91892 0.98347 1.20622 1.12081 0.99344 0.92392 1.21852 1.06579 0.85341 0.99219 1.42345 1.49439 1.10108 1.06726 0.74383 1.23700 0.99840 0.76859 1.02205 0.92526 0.91383 0.92577 0.90915 0.85290 0.84201 0.84949 0.85235 0.82574 0.90724 0.92129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 13.26 55.43 0.74 -23.06 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 19.83 29.54 -169.99 -5.02 14.81 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 7 C -0.52 -13.08 8.82 -34.44 -0.30 -13.38 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.04 0.83 3.80 -91.12 -0.35 0.48 16 10 C 0.10 2.04 8.18 -8.50 -0.07 1.97 16 11 N -0.63 -12.77 3.69 -188.53 -0.69 -13.47 16 12 C 0.55 10.62 7.27 -15.01 -0.11 10.51 16 13 O -0.57 -11.91 12.39 5.11 0.06 -11.84 16 14 C -0.22 -3.47 9.71 -39.27 -0.38 -3.85 16 15 C 0.00 0.02 9.96 -39.21 -0.39 -0.37 16 16 C 0.03 0.40 5.37 -83.90 -0.45 -0.05 16 17 C -0.17 -2.44 10.86 -38.99 -0.42 -2.87 16 18 C -0.22 -3.07 10.81 -39.98 -0.43 -3.51 16 19 C 0.01 0.11 11.90 -16.79 -0.20 -0.09 16 20 N -0.49 -7.77 3.91 -10.56 -0.04 -7.82 16 21 H 0.42 6.65 7.29 -40.82 -0.30 6.36 16 22 C 0.10 2.00 7.80 -8.37 -0.07 1.94 16 23 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 24 H 0.07 1.71 8.11 -51.93 -0.42 1.29 16 25 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 27 H 0.13 1.82 7.89 -52.48 -0.41 1.41 16 28 H 0.14 1.41 8.06 -52.48 -0.42 0.99 16 29 H 0.13 1.60 8.06 -52.48 -0.42 1.17 16 30 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.16 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 288.16 15.07 4.34 4.34 Total: -1.00 -28.89 288.16 -7.94 -36.83 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.06 Total: 7.74 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -3.27 Total: -7.53 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.00 Total: -44.34 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.06 Total: -11.84 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -28.89 -7.94 -36.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.429 kcal (2) G-P(sol) polarization free energy of solvation -28.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds