Wall clock time and date at job start Mon Mar 30 2020 04:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99858 * 2 1 4 4 H 1.48498 * 109.47398 * 240.00274 * 3 2 1 5 5 H 1.48497 * 109.47282 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47056 * 120.00516 * 3 2 1 7 7 C 1.37879 * 120.00119 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99822 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.53505 * 114.20197 * 180.02562 * 9 7 2 11 11 N 1.47069 * 87.98218 * 220.34320 * 10 9 7 12 12 C 1.34773 * 136.05714 * 207.08308 * 11 10 9 13 13 O 1.21787 * 119.99853 * 359.72762 * 12 11 10 14 14 C 1.41520 * 120.00240 * 180.02562 * 12 11 10 15 15 C 1.35617 * 120.00067 * 186.28334 * 14 12 11 16 16 C 1.41663 * 120.00058 * 8.10573 * 15 14 12 17 17 C 1.38284 * 126.26159 * 217.62381 * 16 15 14 18 18 C 1.39783 * 107.08219 * 179.90451 * 17 16 15 19 19 C 1.35505 * 107.90791 * 0.36317 * 18 17 16 20 20 N 1.35751 * 108.91370 * 359.77257 * 19 18 17 21 21 H 0.96997 * 125.69535 * 180.02562 * 20 19 18 22 22 C 1.47065 * 87.88483 * 27.34109 * 11 10 9 23 23 H 0.97005 * 120.00185 * 359.97438 * 1 2 3 24 24 H 1.08998 * 113.28357 * 313.06339 * 9 7 2 25 25 H 1.08995 * 113.46460 * 105.56526 * 10 9 7 26 26 H 1.08997 * 113.46770 * 335.12260 * 10 9 7 27 27 H 1.08007 * 119.99529 * 6.29097 * 14 12 11 28 28 H 1.08003 * 119.99731 * 188.10517 * 15 14 12 29 29 H 1.08006 * 126.45751 * 0.03888 * 17 16 15 30 30 H 1.07998 * 126.04694 * 180.13368 * 18 17 16 31 31 H 1.08000 * 125.54158 * 179.73845 * 19 18 17 32 32 H 1.09006 * 113.46868 * 87.43997 * 22 11 10 33 33 H 1.08998 * 113.47041 * 217.87517 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.1488 -3.7442 -0.0005 11 7 1.2099 -4.3574 -0.9520 12 6 0.8354 -5.6113 -1.2743 13 8 1.3361 -6.5625 -0.7017 14 6 -0.1350 -5.8230 -2.2824 15 6 -0.6054 -7.0727 -2.5191 16 6 -0.2586 -8.1365 -1.6502 17 6 0.0104 -9.4412 -2.0213 18 6 0.3074 -10.1476 -0.8523 19 6 0.2099 -9.2877 0.1904 20 7 -0.1335 -8.0618 -0.2809 21 1 -0.2679 -7.2660 0.2571 22 6 0.8643 -3.0005 -1.4016 23 1 -0.4851 0.8401 0.0004 24 1 0.4438 -2.5305 0.7313 25 1 2.1851 -4.2531 0.9626 26 1 3.1384 -3.5657 -0.4211 27 1 -0.5008 -4.9892 -2.8633 28 1 -1.2445 -7.2570 -3.3700 29 1 -0.0041 -9.8388 -3.0254 30 1 0.5651 -11.1946 -0.7906 31 1 0.3776 -9.5372 1.2277 32 1 1.5153 -2.6259 -2.1916 33 1 -0.1937 -2.8758 -1.6322 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855473370.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:37 Heat of formation + Delta-G solvation = 70.236745 kcal Electronic energy + Delta-G solvation = -17109.278976 eV Core-core repulsion = 14330.811707 eV Total energy + Delta-G solvation = -2778.467269 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.13483 -40.93836 -38.84207 -34.66862 -34.63446 -31.74140 -31.28558 -29.04155 -27.10257 -26.70817 -24.23847 -22.16291 -21.15659 -21.09196 -19.77577 -18.91567 -18.37188 -17.69334 -16.62073 -16.21354 -15.96212 -15.41122 -15.11443 -14.66853 -14.28920 -14.21587 -14.03333 -13.61777 -13.29539 -13.14902 -13.04867 -12.84028 -12.73087 -12.60757 -12.18416 -11.42770 -11.07561 -10.85189 -10.75153 -10.53115 -9.75679 -9.38294 -8.51130 -8.18399 -6.29816 -0.20765 1.47995 1.48656 1.56248 1.71840 2.09615 2.11104 2.43329 2.51442 2.68571 3.11908 3.77911 4.10177 4.24265 4.37318 4.39275 4.50655 4.56677 4.59641 4.66616 4.69251 4.80250 4.89831 4.98978 5.08774 5.28056 5.42785 5.52264 5.56886 5.79042 6.15178 6.21252 6.32327 6.75627 6.78328 6.91776 7.21092 7.40553 8.91296 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.061245 B = 0.004445 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 457.067939 B = 6297.102272 C = 6475.446584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.023 3.977 3 Si 0.958 3.042 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.532 4.532 8 H 0.065 0.935 9 C 0.024 3.976 10 C 0.105 3.895 11 N -0.640 5.640 12 C 0.550 3.450 13 O -0.589 6.589 14 C -0.253 4.253 15 C 0.034 3.966 16 C -0.010 4.010 17 C -0.169 4.169 18 C -0.231 4.231 19 C -0.001 4.001 20 N -0.507 5.507 21 H 0.411 0.589 22 C 0.113 3.887 23 H 0.265 0.735 24 H 0.040 0.960 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.143 0.857 28 H 0.183 0.817 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.180 0.820 32 H 0.077 0.923 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.393 -12.699 -4.342 13.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.783 3.217 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.570 4.570 8 H 0.083 0.917 9 C 0.005 3.995 10 C -0.017 4.017 11 N -0.372 5.372 12 C 0.346 3.654 13 O -0.475 6.475 14 C -0.274 4.274 15 C 0.014 3.986 16 C -0.122 4.122 17 C -0.194 4.194 18 C -0.255 4.255 19 C -0.138 4.138 20 N -0.098 5.098 21 H 0.249 0.751 22 C -0.010 4.010 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.161 0.839 28 H 0.200 0.800 29 H 0.174 0.826 30 H 0.170 0.830 31 H 0.197 0.803 32 H 0.096 0.904 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.383 -13.093 -4.013 13.900 hybrid contribution 0.434 1.499 0.385 1.608 sum -1.949 -11.594 -3.627 12.304 Atomic orbital electron populations 1.70044 1.07407 1.27976 1.50157 1.25745 0.95563 1.02510 0.93913 0.85608 0.78350 0.78675 0.79025 1.19270 1.21158 1.19705 1.21189 0.93292 0.90617 1.51883 0.91706 1.20253 0.94558 0.91681 0.93019 1.23162 0.94463 0.92265 0.91841 1.50075 1.42202 1.05287 1.39656 1.17404 0.84059 0.80450 0.83463 1.90828 1.60268 1.39799 1.56593 1.22064 1.02300 0.99836 1.03237 1.21235 0.92619 0.88983 0.95807 1.18474 1.13691 0.96119 0.83923 1.21639 1.06618 0.91445 0.99683 1.21030 1.11756 1.00516 0.92169 1.22426 1.05680 0.84989 1.00738 1.42470 1.49887 1.10360 1.07093 0.75084 1.23380 0.99848 0.77151 1.00599 0.92586 0.94191 0.92577 0.90404 0.83892 0.79999 0.82588 0.82963 0.80331 0.90443 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.87 13.26 21.45 0.28 -49.58 16 2 C 0.02 1.19 5.46 84.66 0.46 1.65 16 3 Si 0.96 40.53 29.54 68.60 2.03 42.56 16 4 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 5 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 7 C -0.53 -26.95 8.82 25.60 0.23 -26.73 16 8 H 0.06 3.19 7.81 -2.91 -0.02 3.16 16 9 C 0.02 1.14 3.80 -11.12 -0.04 1.10 16 10 C 0.11 4.41 8.18 83.18 0.68 5.09 16 11 N -0.64 -25.81 3.69 -868.58 -3.20 -29.01 16 12 C 0.55 20.94 7.27 85.05 0.62 21.56 16 13 O -0.59 -24.53 12.39 -4.63 -0.06 -24.59 16 14 C -0.25 -7.61 9.71 22.47 0.22 -7.39 16 15 C 0.03 0.85 9.96 22.51 0.22 1.08 16 16 C -0.01 -0.29 5.37 39.08 0.21 -0.08 16 17 C -0.17 -4.44 10.86 22.65 0.25 -4.19 16 18 C -0.23 -5.90 10.81 22.01 0.24 -5.66 16 19 C 0.00 -0.02 11.90 83.45 0.99 0.97 16 20 N -0.51 -15.48 3.91 -187.33 -0.73 -16.21 16 21 H 0.41 13.15 7.29 -92.71 -0.68 12.47 16 22 C 0.11 4.71 7.80 83.27 0.65 5.36 16 23 H 0.27 13.74 8.31 -92.70 -0.77 12.97 16 24 H 0.04 2.09 8.11 -2.39 -0.02 2.07 16 25 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.08 3.15 8.10 -2.39 -0.02 3.13 16 27 H 0.14 3.82 7.89 -2.91 -0.02 3.80 16 28 H 0.18 2.92 8.06 -2.91 -0.02 2.89 16 29 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 30 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 31 H 0.18 3.72 8.06 -2.91 -0.02 3.69 16 32 H 0.08 3.17 8.10 -2.38 -0.02 3.15 16 33 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -61.29 288.16 3.48 -57.81 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.44 Total: 26.27 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.72 Total: -7.25 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -3.65 Total: -94.80 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.06 Total: -24.59 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -61.29 3.48 -57.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473370.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.050 kcal (2) G-P(sol) polarization free energy of solvation -61.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds