Wall clock time and date at job start Mon Mar 30 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00067 * 2 1 4 4 H 1.48501 * 109.47225 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.47207 * 299.99940 * 3 2 1 6 6 H 1.48501 * 109.47387 * 59.99842 * 3 2 1 7 7 C 1.37881 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.53493 * 114.20641 * 179.97438 * 9 7 2 11 11 N 1.47064 * 87.98460 * 139.65366 * 10 9 7 12 12 C 1.34777 * 136.05717 * 152.84373 * 11 10 9 13 13 O 1.21786 * 120.00058 * 0.02562 * 12 11 10 14 14 C 1.41518 * 120.00216 * 180.02562 * 12 11 10 15 15 C 1.35615 * 120.00288 * 180.02562 * 14 12 11 16 16 C 1.41673 * 119.99907 * 180.02562 * 15 14 12 17 17 C 1.38285 * 126.25405 * 179.97438 * 16 15 14 18 18 C 1.39795 * 107.07382 * 179.97438 * 17 16 15 19 19 C 1.35499 * 107.91199 * 0.02562 * 18 17 16 20 20 N 1.35752 * 108.90875 * 0.02562 * 19 18 17 21 21 H 0.97006 * 125.69052 * 180.02562 * 20 19 18 22 22 C 1.47061 * 87.88696 * 333.10267 * 11 10 9 23 23 H 0.96998 * 120.00068 * 0.02562 * 1 2 3 24 24 H 1.09007 * 113.41463 * 46.80427 * 9 7 2 25 25 H 1.09001 * 113.46902 * 24.87691 * 10 9 7 26 26 H 1.08997 * 113.47200 * 254.43727 * 10 9 7 27 27 H 1.08001 * 119.99607 * 0.02562 * 14 12 11 28 28 H 1.07994 * 119.99711 * 359.97438 * 15 14 12 29 29 H 1.07996 * 126.46437 * 0.23917 * 17 16 15 30 30 H 1.07999 * 126.04273 * 179.97438 * 18 17 16 31 31 H 1.08002 * 125.54511 * 180.02562 * 19 18 17 32 32 H 1.09005 * 113.46723 * 141.67360 * 22 11 10 33 33 H 1.08996 * 113.47055 * 272.11893 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.1487 -3.7442 0.0016 11 7 1.2106 -4.3570 0.9541 12 6 0.8355 -5.6107 1.2764 13 8 1.3312 -6.5619 0.6997 14 6 -0.1345 -5.8219 2.2850 15 6 -0.5116 -7.0834 2.6097 16 6 -1.4831 -7.2947 3.6191 17 6 -1.9608 -8.5184 4.0510 18 6 -2.8999 -8.2616 5.0541 19 6 -2.9804 -6.9186 5.2157 20 7 -2.1249 -6.3192 4.3487 21 1 -1.9875 -5.3631 4.2592 22 6 0.8572 -2.9994 1.3955 23 1 -0.4850 0.8400 -0.0004 24 1 0.4412 -2.5324 -0.7272 25 1 3.1387 -3.5657 0.4213 26 1 2.1843 -4.2537 -0.9614 27 1 -0.5744 -4.9783 2.7961 28 1 -0.0720 -7.9269 2.0983 29 1 -1.6614 -9.4896 3.6856 30 1 -3.4625 -9.0025 5.6027 31 1 -3.6209 -6.4082 5.9197 32 1 -0.2034 -2.8768 1.6154 33 1 1.4995 -2.6204 2.1903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855473371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:40 Heat of formation + Delta-G solvation = 60.829217 kcal Electronic energy + Delta-G solvation = -16558.116598 eV Core-core repulsion = 13779.241387 eV Total energy + Delta-G solvation = -2778.875210 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17659 -39.53926 -37.27762 -33.63192 -32.72258 -31.16251 -29.74376 -28.05225 -25.39647 -25.00040 -23.05819 -20.94998 -20.38023 -19.82727 -17.94423 -17.69068 -16.84401 -16.16755 -15.29849 -14.78792 -14.50595 -14.31996 -13.95982 -13.78967 -13.29818 -12.79954 -12.49009 -12.30494 -12.07001 -11.86861 -11.55412 -11.33630 -10.99598 -10.82803 -10.38474 -10.21312 -9.67869 -9.25102 -9.09363 -9.04110 -8.62630 -7.96985 -7.58710 -6.22160 -4.27666 0.78788 2.48253 3.00284 3.12913 3.19993 3.29151 3.32803 3.68191 3.91615 4.30690 4.93777 4.96111 5.08233 5.11631 5.23213 5.37534 5.55859 5.87516 5.97281 6.03714 6.15908 6.17968 6.27319 6.37491 6.44693 6.54363 6.66904 6.81343 6.85210 6.93589 7.36395 7.52418 7.76037 8.14903 8.53019 8.76707 8.78205 9.39442 10.87694 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.004323 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.747926 B = 6474.732178 C = 7165.570571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.068 3.932 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.516 4.516 8 H 0.065 0.935 9 C 0.034 3.966 10 C 0.099 3.901 11 N -0.639 5.639 12 C 0.566 3.434 13 O -0.574 6.574 14 C -0.216 4.216 15 C 0.004 3.996 16 C 0.016 3.984 17 C -0.153 4.153 18 C -0.209 4.209 19 C 0.007 3.993 20 N -0.544 5.544 21 H 0.418 0.582 22 C 0.098 3.902 23 H 0.263 0.737 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.113 0.887 28 H 0.149 0.851 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.167 0.833 32 H 0.057 0.943 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -9.797 9.607 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.083 0.917 9 C 0.014 3.986 10 C -0.023 4.023 11 N -0.371 5.371 12 C 0.360 3.640 13 O -0.458 6.458 14 C -0.237 4.237 15 C -0.017 4.017 16 C -0.094 4.094 17 C -0.178 4.178 18 C -0.233 4.233 19 C -0.128 4.128 20 N -0.138 5.138 21 H 0.256 0.744 22 C -0.024 4.024 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.131 0.869 28 H 0.166 0.834 29 H 0.161 0.839 30 H 0.156 0.844 31 H 0.184 0.816 32 H 0.076 0.924 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.313 -10.188 9.341 14.808 hybrid contribution 0.316 1.512 0.211 1.559 sum -4.997 -8.676 9.552 13.838 Atomic orbital electron populations 1.69963 1.06099 1.27027 1.49281 1.25036 0.94868 0.99443 0.94214 0.86474 0.80227 0.83246 0.77719 1.19518 1.20832 1.20913 1.20961 0.93091 0.89527 1.51858 0.91723 1.20311 0.94801 0.91270 0.92177 1.23329 0.94382 0.93112 0.91501 1.49938 1.42179 1.04890 1.40130 1.16460 0.82963 0.81402 0.83201 1.90765 1.58901 1.40514 1.55644 1.21827 1.02505 0.97336 1.02079 1.20772 0.91189 0.98118 0.91615 1.18346 1.02167 0.88446 1.00480 1.21476 1.00181 0.96257 0.99863 1.20848 1.04362 0.94797 1.03302 1.22024 0.98553 0.93966 0.98210 1.42254 1.32544 1.09121 1.29906 0.74387 1.23563 0.99566 0.77025 1.02295 0.92695 0.91383 0.90853 0.92370 0.86935 0.83370 0.83942 0.84378 0.81610 0.92406 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.95 13.26 55.43 0.74 -23.22 16 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.52 -13.11 8.83 -34.44 -0.30 -13.41 16 8 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 9 C 0.03 0.79 3.77 -91.39 -0.34 0.45 16 10 C 0.10 2.11 8.19 -8.51 -0.07 2.04 16 11 N -0.64 -13.39 3.69 -188.89 -0.70 -14.09 16 12 C 0.57 11.56 7.81 -15.01 -0.12 11.44 16 13 O -0.57 -13.22 16.88 5.11 0.09 -13.13 16 14 C -0.22 -3.51 9.26 -39.27 -0.36 -3.87 16 15 C 0.00 0.06 9.40 -39.21 -0.37 -0.31 16 16 C 0.02 0.20 6.74 -83.91 -0.57 -0.36 16 17 C -0.15 -1.75 10.86 -38.98 -0.42 -2.17 16 18 C -0.21 -2.10 10.81 -39.98 -0.43 -2.54 16 19 C 0.01 0.07 11.90 -16.80 -0.20 -0.13 16 20 N -0.54 -5.84 5.94 -10.56 -0.06 -5.91 16 21 H 0.42 3.84 7.87 -40.82 -0.32 3.52 16 22 C 0.10 2.06 7.78 -8.65 -0.07 2.00 16 23 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 24 H 0.07 1.75 8.11 -51.92 -0.42 1.33 16 25 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 26 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.11 1.63 6.75 -52.49 -0.35 1.27 16 28 H 0.15 2.14 7.46 -52.49 -0.39 1.75 16 29 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 30 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 31 H 0.17 1.01 8.06 -52.49 -0.42 0.58 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 LS Contribution 294.39 15.07 4.44 4.44 Total: -1.00 -30.23 294.39 -7.86 -38.09 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.99 Total: 4.16 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.35 Total: -5.21 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: -0.02 Total: -43.22 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.13 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.23 -7.86 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.918 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds