Wall clock time and date at job start Mon Mar 30 2020 04:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00067 * 2 1 4 4 H 1.48501 * 109.47225 * 180.02562 * 3 2 1 5 5 H 1.48511 * 109.47207 * 299.99940 * 3 2 1 6 6 H 1.48501 * 109.47387 * 59.99842 * 3 2 1 7 7 C 1.37881 * 119.99919 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99779 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.53493 * 114.20641 * 179.97438 * 9 7 2 11 11 N 1.47064 * 87.98460 * 139.65366 * 10 9 7 12 12 C 1.34777 * 136.05717 * 152.84373 * 11 10 9 13 13 O 1.21786 * 120.00058 * 0.02562 * 12 11 10 14 14 C 1.41518 * 120.00216 * 180.02562 * 12 11 10 15 15 C 1.35615 * 120.00288 * 180.02562 * 14 12 11 16 16 C 1.41673 * 119.99907 * 180.02562 * 15 14 12 17 17 C 1.38285 * 126.25405 * 179.97438 * 16 15 14 18 18 C 1.39795 * 107.07382 * 179.97438 * 17 16 15 19 19 C 1.35499 * 107.91199 * 0.02562 * 18 17 16 20 20 N 1.35752 * 108.90875 * 0.02562 * 19 18 17 21 21 H 0.97006 * 125.69052 * 180.02562 * 20 19 18 22 22 C 1.47061 * 87.88696 * 333.10267 * 11 10 9 23 23 H 0.96998 * 120.00068 * 0.02562 * 1 2 3 24 24 H 1.09007 * 113.41463 * 46.80427 * 9 7 2 25 25 H 1.09001 * 113.46902 * 24.87691 * 10 9 7 26 26 H 1.08997 * 113.47200 * 254.43727 * 10 9 7 27 27 H 1.08001 * 119.99607 * 0.02562 * 14 12 11 28 28 H 1.07994 * 119.99711 * 359.97438 * 15 14 12 29 29 H 1.07996 * 126.46437 * 0.23917 * 17 16 15 30 30 H 1.07999 * 126.04273 * 179.97438 * 18 17 16 31 31 H 1.08002 * 125.54511 * 180.02562 * 19 18 17 32 32 H 1.09005 * 113.46723 * 141.67360 * 22 11 10 33 33 H 1.08996 * 113.47055 * 272.11893 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.1487 -3.7442 0.0016 11 7 1.2106 -4.3570 0.9541 12 6 0.8355 -5.6107 1.2764 13 8 1.3312 -6.5619 0.6997 14 6 -0.1345 -5.8219 2.2850 15 6 -0.5116 -7.0834 2.6097 16 6 -1.4831 -7.2947 3.6191 17 6 -1.9608 -8.5184 4.0510 18 6 -2.8999 -8.2616 5.0541 19 6 -2.9804 -6.9186 5.2157 20 7 -2.1249 -6.3192 4.3487 21 1 -1.9875 -5.3631 4.2592 22 6 0.8572 -2.9994 1.3955 23 1 -0.4850 0.8400 -0.0004 24 1 0.4412 -2.5324 -0.7272 25 1 3.1387 -3.5657 0.4213 26 1 2.1843 -4.2537 -0.9614 27 1 -0.5744 -4.9783 2.7961 28 1 -0.0720 -7.9269 2.0983 29 1 -1.6614 -9.4896 3.6856 30 1 -3.4625 -9.0025 5.6027 31 1 -3.6209 -6.4082 5.9197 32 1 -0.2034 -2.8768 1.6154 33 1 1.4995 -2.6204 2.1903 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855473371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:40 Heat of formation + Delta-G solvation = 42.513844 kcal Electronic energy + Delta-G solvation = -16558.910812 eV Core-core repulsion = 13779.241387 eV Total energy + Delta-G solvation = -2779.669424 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.04714 -41.16577 -38.93873 -34.82470 -34.66147 -32.00251 -31.34073 -29.26320 -27.11952 -26.72385 -24.34521 -22.18686 -21.37293 -21.05994 -19.48241 -18.90173 -18.58313 -17.61152 -16.81791 -16.59407 -16.17075 -15.31974 -15.00592 -14.87326 -14.71412 -14.21566 -14.08924 -13.34026 -13.28296 -13.22710 -13.16977 -12.94391 -12.76682 -12.59674 -12.19388 -11.45104 -11.34387 -11.08589 -10.82550 -10.55370 -9.91509 -9.60169 -8.61820 -8.18336 -6.29713 -0.35691 1.45459 1.49052 1.55318 1.59901 2.02075 2.09512 2.33661 2.45049 2.54460 3.12006 3.68679 3.96033 4.20305 4.34338 4.35577 4.40076 4.43259 4.50812 4.55576 4.68993 4.77331 4.88004 4.93765 4.98116 5.23855 5.34113 5.43095 5.57335 5.79543 5.94656 6.06724 6.21462 6.58400 6.79206 6.90682 7.17929 7.40642 8.92005 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.033495 B = 0.004323 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.747926 B = 6474.732178 C = 7165.570571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.022 3.978 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.528 4.528 8 H 0.067 0.933 9 C 0.022 3.978 10 C 0.103 3.897 11 N -0.645 5.645 12 C 0.564 3.436 13 O -0.611 6.611 14 C -0.258 4.258 15 C 0.045 3.955 16 C -0.029 4.029 17 C -0.143 4.143 18 C -0.225 4.225 19 C 0.030 3.970 20 N -0.544 5.544 21 H 0.425 0.575 22 C 0.115 3.885 23 H 0.265 0.735 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.055 0.945 27 H 0.127 0.873 28 H 0.143 0.857 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.204 0.796 32 H 0.060 0.940 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.228 -10.096 11.669 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.179 4.179 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.566 4.566 8 H 0.085 0.915 9 C 0.003 3.997 10 C -0.019 4.019 11 N -0.377 5.377 12 C 0.361 3.639 13 O -0.498 6.498 14 C -0.279 4.279 15 C 0.024 3.976 16 C -0.138 4.138 17 C -0.169 4.169 18 C -0.249 4.249 19 C -0.106 4.106 20 N -0.139 5.139 21 H 0.263 0.737 22 C -0.007 4.007 23 H 0.074 0.926 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.073 0.927 27 H 0.145 0.855 28 H 0.160 0.840 29 H 0.173 0.827 30 H 0.180 0.820 31 H 0.221 0.779 32 H 0.078 0.922 33 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.147 -10.483 11.402 16.664 hybrid contribution 0.421 1.403 -0.311 1.498 sum -5.726 -9.080 11.090 15.435 Atomic orbital electron populations 1.70067 1.07449 1.27837 1.50364 1.25770 0.95584 1.02585 0.93932 0.85468 0.79186 0.79203 0.77566 1.18846 1.20930 1.20425 1.21239 0.93354 0.90426 1.51592 0.91512 1.20189 0.94574 0.91820 0.93119 1.23222 0.94662 0.92153 0.91892 1.49924 1.42320 1.05198 1.40230 1.17045 0.83016 0.80474 0.83363 1.90728 1.60490 1.41233 1.57332 1.21545 1.04281 0.98673 1.03451 1.20820 0.89485 0.97123 0.90181 1.18261 1.03863 0.89659 1.02020 1.21886 0.99322 0.96441 0.99235 1.21254 1.04472 0.95838 1.03318 1.22780 0.96840 0.94119 0.96839 1.42372 1.32382 1.09392 1.29713 0.73656 1.23290 0.99785 0.76883 1.00785 0.92607 0.94405 0.89807 0.92653 0.85470 0.83953 0.82701 0.82000 0.77892 0.92175 0.90054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.14 13.26 21.45 0.28 -49.86 16 2 C 0.02 1.11 5.46 84.66 0.46 1.57 16 3 Si 0.96 40.66 29.54 68.60 2.03 42.69 16 4 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.53 -27.00 8.83 25.60 0.23 -26.77 16 8 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 9 C 0.02 1.07 3.77 -11.29 -0.04 1.03 16 10 C 0.10 4.50 8.19 83.18 0.68 5.18 16 11 N -0.64 -27.52 3.69 -869.71 -3.21 -30.73 16 12 C 0.56 23.52 7.81 85.05 0.66 24.18 16 13 O -0.61 -28.86 16.88 -4.63 -0.08 -28.94 16 14 C -0.26 -8.43 9.26 22.47 0.21 -8.22 16 15 C 0.04 1.27 9.40 22.51 0.21 1.48 16 16 C -0.03 -0.67 6.74 39.08 0.26 -0.41 16 17 C -0.14 -2.92 10.86 22.66 0.25 -2.67 16 18 C -0.23 -3.70 10.81 22.01 0.24 -3.46 16 19 C 0.03 0.45 11.90 83.45 0.99 1.44 16 20 N -0.54 -10.31 5.94 -187.33 -1.11 -11.42 16 21 H 0.42 6.90 7.87 -92.70 -0.73 6.17 16 22 C 0.12 4.90 7.78 83.09 0.65 5.55 16 23 H 0.26 13.68 8.31 -92.71 -0.77 12.91 16 24 H 0.04 2.04 8.11 -2.38 -0.02 2.02 16 25 H 0.08 3.44 8.10 -2.39 -0.02 3.42 16 26 H 0.05 2.39 8.14 -2.39 -0.02 2.38 16 27 H 0.13 3.65 6.75 -2.91 -0.02 3.64 16 28 H 0.14 4.12 7.46 -2.91 -0.02 4.10 16 29 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 30 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 31 H 0.20 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 33 H 0.08 3.33 8.10 -2.39 -0.02 3.31 16 Total: -1.00 -65.11 294.39 3.10 -62.02 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.39 Total: 17.35 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 4.80 Total: -1.10 kcal Atomic # 7 Polarization: -87.97 SS G_CDS: -4.04 Total: -92.01 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.08 Total: -28.94 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -65.11 3.10 -62.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855473371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.530 kcal (2) G-P(sol) polarization free energy of solvation -65.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds