Wall clock time and date at job start Mon Mar 30 2020 03:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38304 * 120.08957 * 2 1 4 4 C 1.37940 * 120.37480 * 179.97438 * 3 2 1 5 5 C 1.39363 * 120.12977 * 0.23834 * 4 3 2 6 6 C 1.38896 * 118.94586 * 359.49320 * 5 4 3 7 7 C 1.37674 * 120.80891 * 0.52924 * 6 5 4 8 8 C 1.51142 * 106.34307 * 180.31440 * 6 5 4 9 9 H 1.08995 * 110.50893 * 241.60536 * 8 6 5 10 10 N 1.46902 * 110.50900 * 118.89540 * 8 6 5 11 11 C 1.46899 * 111.00039 * 155.00089 * 10 8 6 12 12 C 1.50700 * 109.47254 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99710 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99681 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00562 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99623 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47254 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47401 * 119.99369 * 16 14 12 19 19 H 1.48498 * 109.46984 * 239.99786 * 16 14 12 20 20 C 1.51403 * 104.06221 * 359.60225 * 8 6 5 21 21 O 1.21286 * 126.43856 * 180.02562 * 20 8 6 22 22 N 1.34358 * 107.11526 * 0.53244 * 20 8 6 23 23 H 1.08999 * 109.47105 * 89.99654 * 1 2 3 24 24 H 1.08998 * 109.47630 * 209.99828 * 1 2 3 25 25 H 1.09009 * 109.46846 * 330.00026 * 1 2 3 26 26 H 1.08004 * 119.81177 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.93009 * 179.97438 * 4 3 2 28 28 H 1.08006 * 120.04508 * 179.74031 * 7 6 5 29 29 H 1.00903 * 110.99905 * 278.95501 * 10 8 6 30 30 H 1.09006 * 109.47051 * 300.00182 * 11 10 8 31 31 H 1.09003 * 109.47294 * 60.00108 * 11 10 8 32 32 H 0.97001 * 120.00526 * 180.02562 * 15 14 12 33 33 H 0.97003 * 123.88104 * 179.53214 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2004 1.1967 0.0000 4 6 3.5797 1.2035 0.0005 5 6 4.2853 0.0017 -0.0039 6 6 3.5775 -1.1934 0.0018 7 6 2.2007 -1.1975 0.0009 8 6 4.6086 -2.2984 0.0029 9 1 4.5119 -2.9118 -0.8928 10 7 4.4767 -3.1243 1.2106 11 6 5.0049 -4.4762 0.9842 12 6 4.8522 -5.2924 2.2418 13 1 4.4077 -4.8508 3.1214 14 6 5.2810 -6.6025 2.2697 15 7 5.8227 -7.1400 1.1987 16 14 5.0911 -7.6144 3.8283 17 1 4.4564 -6.7840 4.8834 18 1 4.2384 -8.7977 3.5495 19 1 6.4279 -8.0655 4.2916 20 6 5.9333 -1.5654 -0.0131 21 8 7.0360 -2.0704 -0.0178 22 7 5.6577 -0.2504 -0.0097 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8901 0.5139 26 1 1.6587 2.1311 -0.0004 27 1 4.1139 2.1422 0.0001 28 1 1.6628 -2.1341 0.0012 29 1 4.9293 -2.6866 1.9992 30 1 4.4520 -4.9513 0.1738 31 1 6.0598 -4.4141 0.7168 32 1 6.1241 -8.0618 1.2182 33 1 6.3349 0.4440 -0.0113 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020199721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:01 Heat of formation + Delta-G solvation = -2.978607 kcal Electronic energy + Delta-G solvation = -17112.585808 eV Core-core repulsion = 14330.943683 eV Total energy + Delta-G solvation = -2781.642125 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.31093 -38.41367 -35.86104 -35.03208 -32.56926 -31.41135 -30.79041 -27.69343 -26.20628 -25.29084 -22.08992 -21.73923 -20.92045 -20.55165 -17.80580 -16.58562 -16.41093 -15.61634 -15.29325 -14.84863 -14.50728 -14.38535 -13.73808 -13.67445 -13.35465 -13.05544 -12.48274 -12.32495 -12.16849 -12.10572 -11.72585 -11.35440 -10.93200 -10.81006 -10.54718 -10.43791 -10.15590 -9.93541 -9.21627 -8.78210 -8.50414 -7.80190 -7.50820 -6.02406 -4.05025 1.24280 1.43587 2.66806 3.14549 3.32508 3.39407 3.44410 3.83576 4.31503 4.43520 4.72664 4.85372 4.97495 5.20155 5.25182 5.34340 5.38177 5.51525 5.60692 5.63411 5.80161 5.99307 6.06439 6.19467 6.45593 6.66060 6.74470 6.92310 7.09755 7.12969 7.42476 7.70687 8.05757 8.12294 8.21020 8.46082 9.02464 9.59218 11.08718 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.005775 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.372816 B = 4847.547105 C = 5633.329595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.115 4.115 3 C -0.091 4.091 4 C -0.143 4.143 5 C 0.136 3.864 6 C -0.110 4.110 7 C -0.045 4.045 8 C 0.094 3.906 9 H 0.121 0.879 10 N -0.645 5.645 11 C 0.185 3.815 12 C -0.516 4.516 13 H 0.063 0.937 14 C 0.057 3.943 15 N -0.895 5.895 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.284 1.284 20 C 0.496 3.504 21 O -0.491 6.491 22 N -0.665 5.665 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.132 0.868 29 H 0.335 0.665 30 H 0.032 0.968 31 H 0.004 0.996 32 H 0.262 0.738 33 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.299 17.225 -3.849 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.116 4.116 3 C -0.110 4.110 4 C -0.164 4.164 5 C 0.039 3.961 6 C -0.114 4.114 7 C -0.064 4.064 8 C -0.020 4.020 9 H 0.138 0.862 10 N -0.276 5.276 11 C 0.059 3.941 12 C -0.555 4.555 13 H 0.082 0.918 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.728 3.272 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.211 1.211 20 C 0.281 3.719 21 O -0.363 6.363 22 N -0.310 5.310 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.143 0.857 27 H 0.139 0.861 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.051 0.949 31 H 0.022 0.978 32 H 0.071 0.929 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -8.232 16.396 -4.047 18.788 hybrid contribution 1.409 -0.006 0.763 1.602 sum -6.824 16.391 -3.284 18.055 Atomic orbital electron populations 1.20702 0.90982 1.02729 1.02035 1.19795 0.96075 0.92657 1.03080 1.20654 0.92775 0.97675 0.99869 1.20236 0.93974 0.95057 1.07174 1.18222 0.82933 0.95290 0.99690 1.19894 0.94139 0.93000 1.04368 1.20217 0.91692 0.98097 0.96403 1.21085 0.87795 0.93648 0.99458 0.86151 1.61049 1.61089 1.04123 1.01318 1.19820 0.94041 0.82091 0.98109 1.21133 1.39985 0.96452 0.97896 0.91846 1.24971 0.95094 0.97789 0.96578 1.69974 1.41022 1.14146 1.28215 0.86409 0.77685 0.80013 0.83100 1.19654 1.20944 1.21068 1.22098 0.92646 0.82417 0.74692 1.90825 1.26494 1.71543 1.47400 1.43876 1.06056 1.09312 1.71719 0.91506 0.91355 0.91848 0.85730 0.86110 0.84999 0.84791 0.94945 0.97795 0.92880 0.75799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.02 36.00 0.36 -0.56 16 2 C -0.11 -1.29 5.89 -104.54 -0.62 -1.91 16 3 C -0.09 -0.93 9.68 -39.67 -0.38 -1.31 16 4 C -0.14 -1.57 10.07 -39.27 -0.40 -1.97 16 5 C 0.14 1.86 7.11 -83.69 -0.60 1.27 16 6 C -0.11 -1.70 5.99 -104.37 -0.62 -2.33 16 7 C -0.05 -0.62 9.70 -39.73 -0.39 -1.00 16 8 C 0.09 1.74 3.27 -69.45 -0.23 1.51 16 9 H 0.12 2.25 7.83 -51.93 -0.41 1.85 16 10 N -0.65 -14.03 6.32 -109.85 -0.69 -14.72 16 11 C 0.19 4.94 5.30 -4.98 -0.03 4.91 16 12 C -0.52 -14.79 9.32 -34.44 -0.32 -15.11 16 13 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -27.16 13.29 55.43 0.74 -26.43 16 16 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 20 C 0.50 9.21 8.09 -10.83 -0.09 9.12 16 21 O -0.49 -11.05 17.70 5.55 0.10 -10.95 16 22 N -0.67 -9.49 5.88 -9.70 -0.06 -9.54 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 25 H 0.06 0.45 8.09 -51.92 -0.42 0.03 16 26 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 27 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 29 H 0.33 7.27 8.46 -39.29 -0.33 6.94 16 30 H 0.03 0.91 8.08 -51.93 -0.42 0.49 16 31 H 0.00 0.12 7.82 -51.93 -0.41 -0.28 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.40 4.64 8.96 -40.82 -0.37 4.28 16 LS Contribution 289.70 15.07 4.37 4.37 Total: -1.00 -32.65 289.70 -7.98 -40.63 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.01 Total: 5.54 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.40 Total: -5.81 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: -0.02 Total: -50.69 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.10 Total: -10.95 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.65 -7.98 -40.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.652 kcal (2) G-P(sol) polarization free energy of solvation -32.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds