Wall clock time and date at job start Mon Mar 30 2020 03:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38304 * 120.08957 * 2 1 4 4 C 1.37940 * 120.37480 * 179.97438 * 3 2 1 5 5 C 1.39363 * 120.12977 * 0.23834 * 4 3 2 6 6 C 1.38896 * 118.94586 * 359.49320 * 5 4 3 7 7 C 1.37674 * 120.80891 * 0.52924 * 6 5 4 8 8 C 1.51142 * 106.34307 * 180.31440 * 6 5 4 9 9 H 1.08995 * 110.50893 * 241.60536 * 8 6 5 10 10 N 1.46902 * 110.50900 * 118.89540 * 8 6 5 11 11 C 1.46899 * 111.00039 * 155.00089 * 10 8 6 12 12 C 1.50700 * 109.47254 * 180.02562 * 11 10 8 13 13 H 1.07994 * 119.99710 * 359.97438 * 12 11 10 14 14 C 1.37877 * 119.99681 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00562 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99623 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47254 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47401 * 119.99369 * 16 14 12 19 19 H 1.48498 * 109.46984 * 239.99786 * 16 14 12 20 20 C 1.51403 * 104.06221 * 359.60225 * 8 6 5 21 21 O 1.21286 * 126.43856 * 180.02562 * 20 8 6 22 22 N 1.34358 * 107.11526 * 0.53244 * 20 8 6 23 23 H 1.08999 * 109.47105 * 89.99654 * 1 2 3 24 24 H 1.08998 * 109.47630 * 209.99828 * 1 2 3 25 25 H 1.09009 * 109.46846 * 330.00026 * 1 2 3 26 26 H 1.08004 * 119.81177 * 359.97438 * 3 2 1 27 27 H 1.08002 * 119.93009 * 179.97438 * 4 3 2 28 28 H 1.08006 * 120.04508 * 179.74031 * 7 6 5 29 29 H 1.00903 * 110.99905 * 278.95501 * 10 8 6 30 30 H 1.09006 * 109.47051 * 300.00182 * 11 10 8 31 31 H 1.09003 * 109.47294 * 60.00108 * 11 10 8 32 32 H 0.97001 * 120.00526 * 180.02562 * 15 14 12 33 33 H 0.97003 * 123.88104 * 179.53214 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2004 1.1967 0.0000 4 6 3.5797 1.2035 0.0005 5 6 4.2853 0.0017 -0.0039 6 6 3.5775 -1.1934 0.0018 7 6 2.2007 -1.1975 0.0009 8 6 4.6086 -2.2984 0.0029 9 1 4.5119 -2.9118 -0.8928 10 7 4.4767 -3.1243 1.2106 11 6 5.0049 -4.4762 0.9842 12 6 4.8522 -5.2924 2.2418 13 1 4.4077 -4.8508 3.1214 14 6 5.2810 -6.6025 2.2697 15 7 5.8227 -7.1400 1.1987 16 14 5.0911 -7.6144 3.8283 17 1 4.4564 -6.7840 4.8834 18 1 4.2384 -8.7977 3.5495 19 1 6.4279 -8.0655 4.2916 20 6 5.9333 -1.5654 -0.0131 21 8 7.0360 -2.0704 -0.0178 22 7 5.6577 -0.2504 -0.0097 23 1 -0.3633 0.0001 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8901 0.5139 26 1 1.6587 2.1311 -0.0004 27 1 4.1139 2.1422 0.0001 28 1 1.6628 -2.1341 0.0012 29 1 4.9293 -2.6866 1.9992 30 1 4.4520 -4.9513 0.1738 31 1 6.0598 -4.4141 0.7168 32 1 6.1241 -8.0618 1.2182 33 1 6.3349 0.4440 -0.0113 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020199721.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:01 Heat of formation + Delta-G solvation = -27.146457 kcal Electronic energy + Delta-G solvation = -17113.633804 eV Core-core repulsion = 14330.943683 eV Total energy + Delta-G solvation = -2782.690122 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.59124 -39.65332 -37.21604 -36.75351 -34.60725 -32.36411 -32.11057 -29.37906 -27.17602 -27.03630 -23.88707 -23.06706 -22.13921 -21.86582 -19.06059 -18.52838 -17.86798 -17.21120 -16.63447 -16.48047 -16.08597 -15.55039 -14.93803 -14.77399 -14.63150 -14.54454 -14.20385 -13.91569 -13.45828 -13.29256 -12.90296 -12.78475 -12.75029 -12.49680 -12.13833 -11.77228 -11.69343 -11.53181 -11.30610 -10.70775 -9.80362 -9.38313 -8.85975 -8.25220 -6.37735 0.13738 0.45383 1.28756 1.40173 1.41410 1.55441 1.92605 2.38328 2.82225 2.98799 3.08381 3.35018 3.61269 3.96182 4.11263 4.16209 4.36494 4.53507 4.57909 4.84039 4.96569 5.00362 5.12560 5.16472 5.23729 5.29060 5.46515 5.52441 5.62153 5.73886 5.77596 5.90372 6.10838 6.15952 6.41162 6.78056 6.86348 7.32574 8.87139 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.005775 C = 0.004969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.372816 B = 4847.547105 C = 5633.329595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C -0.082 4.082 4 C -0.126 4.126 5 C 0.117 3.883 6 C -0.131 4.131 7 C -0.064 4.064 8 C 0.087 3.913 9 H 0.105 0.895 10 N -0.638 5.638 11 C 0.204 3.796 12 C -0.537 4.537 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.934 5.934 16 Si 0.979 3.021 17 H -0.260 1.260 18 H -0.274 1.274 19 H -0.279 1.279 20 C 0.495 3.505 21 O -0.543 6.543 22 N -0.643 5.643 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.166 0.834 27 H 0.156 0.844 28 H 0.122 0.878 29 H 0.334 0.666 30 H 0.009 0.991 31 H -0.035 1.035 32 H 0.266 0.734 33 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.343 19.885 -2.829 22.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.107 4.107 3 C -0.100 4.100 4 C -0.146 4.146 5 C 0.021 3.979 6 C -0.135 4.135 7 C -0.083 4.083 8 C -0.026 4.026 9 H 0.123 0.877 10 N -0.267 5.267 11 C 0.077 3.923 12 C -0.576 4.576 13 H 0.086 0.914 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.802 3.198 17 H -0.184 1.184 18 H -0.199 1.199 19 H -0.205 1.205 20 C 0.281 3.719 21 O -0.418 6.418 22 N -0.287 5.287 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.184 0.816 27 H 0.174 0.826 28 H 0.140 0.860 29 H 0.152 0.848 30 H 0.027 0.973 31 H -0.018 1.018 32 H 0.075 0.925 33 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -10.324 19.134 -3.036 21.952 hybrid contribution 1.917 -0.686 0.362 2.068 sum -8.407 18.447 -2.674 20.448 Atomic orbital electron populations 1.20784 0.88818 1.03686 1.03182 1.20162 0.97639 0.91987 1.00941 1.21167 0.92537 0.98780 0.97516 1.20677 0.94437 0.95034 1.04463 1.18416 0.81984 0.95887 1.01595 1.19672 0.94494 0.92059 1.07234 1.20322 0.91056 0.99214 0.97674 1.21086 0.89880 0.94310 0.97336 0.87713 1.60906 1.60336 1.02660 1.02840 1.19387 0.91351 0.84695 0.96876 1.21491 1.40321 0.97264 0.98479 0.91440 1.26007 0.94311 0.99077 1.00357 1.70115 1.41769 1.14759 1.30726 0.85202 0.77907 0.78168 0.78498 1.18424 1.19922 1.20505 1.21879 0.91602 0.83969 0.74488 1.90790 1.27954 1.72874 1.50218 1.43498 1.07180 1.07982 1.70069 0.90160 0.91828 0.89538 0.81617 0.82605 0.85976 0.84842 0.97292 1.01751 0.92505 0.73854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.02 71.24 0.71 -0.73 16 2 C -0.11 -2.05 5.89 -19.81 -0.12 -2.17 16 3 C -0.08 -1.26 9.68 22.21 0.21 -1.04 16 4 C -0.13 -2.22 10.07 22.47 0.23 -1.99 16 5 C 0.12 3.02 7.11 38.34 0.27 3.29 16 6 C -0.13 -4.06 5.99 -19.70 -0.12 -4.18 16 7 C -0.06 -1.70 9.70 22.17 0.22 -1.49 16 8 C 0.09 3.43 3.27 43.79 0.14 3.57 16 9 H 0.11 4.33 7.83 -2.39 -0.02 4.32 16 10 N -0.64 -29.34 6.32 -501.46 -3.17 -32.51 16 11 C 0.20 11.63 5.30 85.56 0.45 12.08 16 12 C -0.54 -31.86 9.32 25.60 0.24 -31.62 16 13 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 14 C 0.00 0.05 5.46 84.66 0.46 0.51 16 15 N -0.93 -58.60 13.29 21.45 0.28 -58.32 16 16 Si 0.98 45.48 29.54 68.60 2.03 47.51 16 17 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 20 C 0.50 19.28 8.09 87.95 0.71 20.00 16 21 O -0.54 -26.01 17.70 -3.05 -0.05 -26.07 16 22 N -0.64 -18.04 5.88 -303.22 -1.78 -19.83 16 23 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 25 H 0.09 0.80 8.09 -2.38 -0.02 0.78 16 26 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 27 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 28 H 0.12 3.40 8.06 -2.91 -0.02 3.38 16 29 H 0.33 15.25 8.46 -89.69 -0.76 14.49 16 30 H 0.01 0.54 8.08 -2.38 -0.02 0.52 16 31 H -0.04 -2.26 7.82 -2.39 -0.02 -2.28 16 32 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 33 H 0.42 9.14 8.96 -92.71 -0.83 8.30 16 Total: -1.00 -74.67 289.70 0.27 -74.40 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -0.45 Total: 18.58 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 3.42 Total: -3.77 kcal Atomic # 7 Polarization: -105.99 SS G_CDS: -4.67 Total: -110.66 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.07 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.67 0.27 -74.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020199721.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.255 kcal (2) G-P(sol) polarization free energy of solvation -74.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds