Wall clock time and date at job start Mon Mar 30 2020 04:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47463 * 2 1 4 4 O 1.42907 * 109.47115 * 240.00125 * 2 1 3 5 5 C 1.50699 * 109.47484 * 120.00353 * 2 1 3 6 6 C 1.38067 * 120.05107 * 93.10254 * 5 2 1 7 7 C 1.38311 * 120.09089 * 180.25468 * 6 5 2 8 8 C 1.38346 * 120.18021 * 359.77282 * 7 6 5 9 9 C 1.38033 * 120.09186 * 359.95329 * 8 7 6 10 10 C 1.39066 * 120.04410 * 272.83668 * 5 2 1 11 11 N 1.39297 * 120.08488 * 359.97438 * 10 5 2 12 12 C 1.36856 * 120.00531 * 276.02856 * 11 10 5 13 13 H 1.07997 * 119.99878 * 331.20273 * 12 11 10 14 14 C 1.38789 * 120.00049 * 151.19308 * 12 11 10 15 15 N 1.31595 * 119.99857 * 151.24461 * 14 12 11 16 16 Si 1.86804 * 120.00117 * 331.51869 * 14 12 11 17 17 H 1.48497 * 109.47196 * 95.55725 * 16 14 12 18 18 H 1.48501 * 109.46775 * 215.55577 * 16 14 12 19 19 H 1.48502 * 109.47140 * 335.55305 * 16 14 12 20 20 C 1.46503 * 119.99763 * 96.03482 * 11 10 5 21 21 C 1.47192 * 109.47414 * 84.78100 * 20 11 10 22 22 N 5.96219 * 81.71853 * 70.55923 * 2 1 3 23 23 H 1.08998 * 109.47283 * 303.65517 * 1 2 3 24 24 H 1.08999 * 109.47467 * 63.65516 * 1 2 3 25 25 H 1.09004 * 109.47120 * 183.65543 * 1 2 3 26 26 H 0.96707 * 113.99489 * 299.99959 * 4 2 1 27 27 H 1.08000 * 119.95603 * 359.97438 * 6 5 2 28 28 H 1.08000 * 119.90768 * 179.74509 * 7 6 5 29 29 H 1.08003 * 119.95896 * 179.97438 * 8 7 6 30 30 H 1.07991 * 120.04511 * 180.02562 * 9 8 7 31 31 H 0.96997 * 119.99927 * 180.02562 * 15 14 12 32 32 H 1.09010 * 109.46732 * 204.78378 * 20 11 10 33 33 H 1.09002 * 109.47283 * 324.77806 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0324 -0.7105 1.2304 6 6 2.3238 -2.0591 1.1795 7 6 2.7800 -2.7131 2.3096 8 6 2.9506 -2.0185 3.4939 9 6 2.6668 -0.6689 3.5517 10 6 2.2083 -0.0074 2.4173 11 7 1.9212 1.3546 2.4712 12 6 2.8570 2.2678 2.0673 13 1 3.9086 2.0365 2.1510 14 6 2.4546 3.4912 1.5500 15 7 3.2272 4.5481 1.6833 16 14 0.8129 3.6393 0.6711 17 1 -0.2185 4.1180 1.6262 18 1 0.9367 4.6060 -0.4493 19 1 0.4155 2.3116 0.1377 20 6 0.6173 1.8094 2.9606 21 6 0.6477 1.8967 4.4296 22 7 0.6712 1.9637 5.5636 23 1 -0.3634 0.5695 0.8554 24 1 -0.3634 0.4560 -0.9209 25 1 -0.3633 -1.0256 0.0655 26 1 1.7209 -1.5953 -1.2329 27 1 2.1912 -2.6050 0.2571 28 1 3.0032 -3.7689 2.2675 29 1 3.3066 -2.5329 4.3743 30 1 2.8007 -0.1274 4.4764 31 1 2.9459 5.4032 1.3221 32 1 0.3948 2.7913 2.5427 33 1 -0.1528 1.1014 2.6545 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035650444.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:44 Heat of formation + Delta-G solvation = 39.026424 kcal Electronic energy + Delta-G solvation = -18146.801039 eV Core-core repulsion = 15366.980389 eV Total energy + Delta-G solvation = -2779.820650 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.58398 -36.84582 -36.33815 -35.00695 -32.12171 -31.32746 -29.78205 -29.03499 -27.11165 -24.18169 -23.25504 -21.06728 -20.38336 -18.20215 -17.39425 -16.55825 -15.91986 -15.48174 -15.20723 -14.75056 -14.04163 -13.88036 -13.48801 -13.29417 -12.89566 -12.78294 -12.45784 -12.30193 -12.03159 -11.71949 -11.61278 -11.57808 -11.16122 -10.90209 -10.65844 -10.30841 -10.22693 -9.80726 -9.68473 -8.91037 -8.35689 -8.09772 -7.57954 -6.32736 -3.70999 1.80929 1.85413 3.04799 3.24030 3.26490 3.34619 3.49186 4.19197 4.21380 4.61242 4.76057 4.82099 5.03586 5.12776 5.28652 5.45170 5.60062 5.63345 5.66659 5.80951 5.90604 6.01050 6.07093 6.24043 6.37031 6.43717 6.60864 6.90679 6.93413 7.20461 7.31684 7.63532 7.96683 8.15059 8.25310 8.61182 9.33207 9.62071 10.80329 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.012149 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.189223 B = 2304.130052 C = 3086.605039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.139 3.861 3 H 0.134 0.866 4 O -0.559 6.559 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.140 4.140 8 C -0.117 4.117 9 C -0.132 4.132 10 C 0.206 3.794 11 N -0.547 5.547 12 C -0.287 4.287 13 H 0.092 0.908 14 C 0.047 3.953 15 N -0.868 5.868 16 Si 0.838 3.162 17 H -0.280 1.280 18 H -0.292 1.292 19 H -0.236 1.236 20 C 0.211 3.789 21 C 0.205 3.795 22 N -0.466 5.466 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.361 0.639 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.270 0.730 32 H 0.105 0.895 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.961 -11.450 -3.561 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.081 3.919 3 H 0.152 0.848 4 O -0.364 6.364 5 C -0.127 4.127 6 C -0.131 4.131 7 C -0.159 4.159 8 C -0.136 4.136 9 C -0.152 4.152 10 C 0.113 3.887 11 N -0.264 5.264 12 C -0.413 4.413 13 H 0.110 0.890 14 C -0.157 4.157 15 N -0.505 5.505 16 Si 0.665 3.335 17 H -0.208 1.208 18 H -0.219 1.219 19 H -0.159 1.159 20 C 0.083 3.917 21 C -0.115 4.115 22 N -0.145 5.145 23 H 0.087 0.913 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.208 0.792 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.575 -10.508 -2.061 12.073 hybrid contribution -0.936 -0.178 -0.614 1.133 sum -6.510 -10.687 -2.675 12.796 Atomic orbital electron populations 1.22525 0.96414 1.01389 1.02742 1.21037 0.92329 0.97740 0.80833 0.84823 1.86686 1.77386 1.28173 1.44187 1.21038 1.01013 0.93716 0.96928 1.20649 1.00750 0.93782 0.97892 1.20893 1.02548 0.99257 0.93181 1.20935 1.00799 0.94244 0.97618 1.21649 0.99770 0.94524 0.99299 1.17347 0.95321 0.84830 0.91242 1.41421 1.14286 0.99961 1.70693 1.18734 0.88747 0.94393 1.39386 0.89041 1.25289 0.97508 0.95165 0.97737 1.69915 1.38963 0.99352 1.42258 0.87737 0.84891 0.80004 0.80857 1.20843 1.21876 1.15915 1.19433 0.89734 1.02079 0.80470 1.31124 0.91954 0.91859 0.96602 1.80995 1.09519 1.10122 1.13909 0.91296 0.91965 0.93052 0.79203 0.86901 0.86894 0.86899 0.86589 0.91934 0.87809 0.89196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 7.93 37.15 0.29 -2.20 16 2 C 0.14 2.37 3.40 -27.89 -0.09 2.28 16 3 H 0.13 2.75 4.52 -51.93 -0.23 2.51 16 4 O -0.56 -8.95 13.03 -35.23 -0.46 -9.41 16 5 C -0.12 -2.14 5.08 -104.38 -0.53 -2.67 16 6 C -0.11 -1.64 9.30 -39.62 -0.37 -2.01 16 7 C -0.14 -1.97 10.04 -39.51 -0.40 -2.36 16 8 C -0.12 -1.79 10.04 -39.62 -0.40 -2.19 16 9 C -0.13 -2.40 9.89 -39.34 -0.39 -2.79 16 10 C 0.21 3.97 5.01 -83.84 -0.42 3.55 16 11 N -0.55 -11.50 1.49 -116.25 -0.17 -11.68 16 12 C -0.29 -7.19 8.93 -15.11 -0.13 -7.33 16 13 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 14 C 0.05 1.20 5.23 -17.45 -0.09 1.11 16 15 N -0.87 -24.27 13.97 55.49 0.77 -23.50 16 16 Si 0.84 17.89 23.94 -169.99 -4.07 13.83 16 17 H -0.28 -5.80 6.59 56.52 0.37 -5.43 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.24 -4.40 3.39 56.52 0.19 -4.21 16 20 C 0.21 4.02 4.52 -6.83 -0.03 3.99 16 21 C 0.20 4.19 15.65 -20.75 -0.32 3.86 16 22 N -0.47 -10.15 18.54 42.16 0.78 -9.36 16 23 H 0.07 1.00 5.37 -51.93 -0.28 0.72 16 24 H 0.06 0.86 8.12 -51.93 -0.42 0.44 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.36 4.14 7.32 45.56 0.33 4.48 16 27 H 0.11 1.32 6.43 -52.49 -0.34 0.98 16 28 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 29 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 30 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 31 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.10 2.09 2.85 -51.92 -0.15 1.94 16 33 H 0.09 1.40 6.37 -51.93 -0.33 1.07 16 LS Contribution 272.73 15.07 4.11 4.11 Total: -1.00 -28.82 272.73 -4.83 -33.65 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -2.91 Total: 9.13 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.88 Total: -6.76 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: 1.38 Total: -44.54 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -0.46 Total: -9.41 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -4.07 Total: 13.83 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.82 -4.83 -33.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035650444.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.676 kcal (2) G-P(sol) polarization free energy of solvation -28.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds