Wall clock time and date at job start Mon Mar 30 2020 04:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47463 * 2 1 4 4 O 1.42907 * 109.47115 * 240.00125 * 2 1 3 5 5 C 1.50699 * 109.47484 * 120.00353 * 2 1 3 6 6 C 1.38067 * 120.05107 * 93.10254 * 5 2 1 7 7 C 1.38311 * 120.09089 * 180.25468 * 6 5 2 8 8 C 1.38346 * 120.18021 * 359.77282 * 7 6 5 9 9 C 1.38033 * 120.09186 * 359.95329 * 8 7 6 10 10 C 1.39066 * 120.04410 * 272.83668 * 5 2 1 11 11 N 1.39297 * 120.08488 * 359.97438 * 10 5 2 12 12 C 1.36856 * 120.00531 * 276.02856 * 11 10 5 13 13 H 1.07997 * 119.99878 * 331.20273 * 12 11 10 14 14 C 1.38789 * 120.00049 * 151.19308 * 12 11 10 15 15 N 1.31595 * 119.99857 * 151.24461 * 14 12 11 16 16 Si 1.86804 * 120.00117 * 331.51869 * 14 12 11 17 17 H 1.48497 * 109.47196 * 95.55725 * 16 14 12 18 18 H 1.48501 * 109.46775 * 215.55577 * 16 14 12 19 19 H 1.48502 * 109.47140 * 335.55305 * 16 14 12 20 20 C 1.46503 * 119.99763 * 96.03482 * 11 10 5 21 21 C 1.47192 * 109.47414 * 84.78100 * 20 11 10 22 22 N 5.96219 * 81.71853 * 70.55923 * 2 1 3 23 23 H 1.08998 * 109.47283 * 303.65517 * 1 2 3 24 24 H 1.08999 * 109.47467 * 63.65516 * 1 2 3 25 25 H 1.09004 * 109.47120 * 183.65543 * 1 2 3 26 26 H 0.96707 * 113.99489 * 299.99959 * 4 2 1 27 27 H 1.08000 * 119.95603 * 359.97438 * 6 5 2 28 28 H 1.08000 * 119.90768 * 179.74509 * 7 6 5 29 29 H 1.08003 * 119.95896 * 179.97438 * 8 7 6 30 30 H 1.07991 * 120.04511 * 180.02562 * 9 8 7 31 31 H 0.96997 * 119.99927 * 180.02562 * 15 14 12 32 32 H 1.09010 * 109.46732 * 204.78378 * 20 11 10 33 33 H 1.09002 * 109.47283 * 324.77806 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0324 -0.7105 1.2304 6 6 2.3238 -2.0591 1.1795 7 6 2.7800 -2.7131 2.3096 8 6 2.9506 -2.0185 3.4939 9 6 2.6668 -0.6689 3.5517 10 6 2.2083 -0.0074 2.4173 11 7 1.9212 1.3546 2.4712 12 6 2.8570 2.2678 2.0673 13 1 3.9086 2.0365 2.1510 14 6 2.4546 3.4912 1.5500 15 7 3.2272 4.5481 1.6833 16 14 0.8129 3.6393 0.6711 17 1 -0.2185 4.1180 1.6262 18 1 0.9367 4.6060 -0.4493 19 1 0.4155 2.3116 0.1377 20 6 0.6173 1.8094 2.9606 21 6 0.6477 1.8967 4.4296 22 7 0.6712 1.9637 5.5636 23 1 -0.3634 0.5695 0.8554 24 1 -0.3634 0.4560 -0.9209 25 1 -0.3633 -1.0256 0.0655 26 1 1.7209 -1.5953 -1.2329 27 1 2.1912 -2.6050 0.2571 28 1 3.0032 -3.7689 2.2675 29 1 3.3066 -2.5329 4.3743 30 1 2.8007 -0.1274 4.4764 31 1 2.9459 5.4032 1.3221 32 1 0.3948 2.7913 2.5427 33 1 -0.1528 1.1014 2.6545 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035650444.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:43 Heat of formation + Delta-G solvation = 19.281851 kcal Electronic energy + Delta-G solvation = -18147.657228 eV Core-core repulsion = 15366.980389 eV Total energy + Delta-G solvation = -2780.676839 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91794 -38.32645 -37.65480 -36.66240 -33.95939 -32.59044 -31.14198 -30.26224 -28.77913 -25.77752 -24.51664 -22.45690 -21.67213 -19.96539 -18.85860 -18.01779 -17.30382 -17.13230 -16.59048 -15.99752 -15.43652 -15.20431 -15.08342 -14.67565 -14.49658 -14.22795 -14.02129 -13.85335 -13.59473 -13.15179 -12.91923 -12.84167 -12.54717 -12.40258 -12.01333 -11.95922 -11.67843 -11.30824 -11.04977 -10.70451 -9.62638 -9.48339 -9.22937 -8.28667 -5.67090 0.55132 0.58495 1.32593 1.49801 1.58187 1.68893 1.84070 2.38626 2.89936 2.95364 3.17968 3.30179 3.67946 3.88264 4.14307 4.23104 4.29199 4.34589 4.44032 4.51328 4.68516 4.78113 4.94576 4.96606 5.16365 5.29938 5.39845 5.65658 5.68137 5.72291 5.95623 6.03359 6.24940 6.59704 6.81253 6.98871 7.47576 7.79398 8.88991 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.012149 C = 0.009069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.189223 B = 2304.130052 C = 3086.605039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.139 3.861 3 H 0.094 0.906 4 O -0.571 6.571 5 C -0.130 4.130 6 C -0.108 4.108 7 C -0.126 4.126 8 C -0.118 4.118 9 C -0.153 4.153 10 C 0.174 3.826 11 N -0.549 5.549 12 C -0.275 4.275 13 H 0.039 0.961 14 C -0.009 4.009 15 N -0.930 5.930 16 Si 0.904 3.096 17 H -0.264 1.264 18 H -0.311 1.311 19 H -0.194 1.194 20 C 0.211 3.789 21 C 0.214 3.786 22 N -0.493 5.493 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.383 0.617 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.090 0.910 31 H 0.268 0.732 32 H 0.097 0.903 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.125 -14.818 -4.851 17.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.080 3.920 3 H 0.112 0.888 4 O -0.379 6.379 5 C -0.132 4.132 6 C -0.126 4.126 7 C -0.143 4.143 8 C -0.137 4.137 9 C -0.173 4.173 10 C 0.081 3.919 11 N -0.266 5.266 12 C -0.403 4.403 13 H 0.057 0.943 14 C -0.208 4.208 15 N -0.571 5.571 16 Si 0.729 3.271 17 H -0.191 1.191 18 H -0.240 1.240 19 H -0.116 1.116 20 C 0.083 3.917 21 C -0.105 4.105 22 N -0.174 5.174 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.233 0.767 27 H 0.168 0.832 28 H 0.171 0.829 29 H 0.154 0.846 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.115 0.885 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.762 -13.954 -3.339 16.313 hybrid contribution -0.115 0.673 -0.159 0.701 sum -7.877 -13.282 -3.498 15.833 Atomic orbital electron populations 1.22504 0.94044 1.03417 1.02922 1.20814 0.94098 0.95984 0.81056 0.88805 1.86646 1.77779 1.29968 1.43524 1.21114 1.01278 0.94954 0.95865 1.21088 0.99107 0.92746 0.99651 1.21364 0.99998 1.01023 0.91955 1.21229 0.99985 0.92999 0.99440 1.21604 1.01442 0.96040 0.98232 1.17573 0.97512 0.84118 0.92686 1.41236 1.14079 1.00386 1.70915 1.18350 0.87600 0.95349 1.38961 0.94277 1.25965 1.02047 0.94382 0.98362 1.70064 1.42283 1.00050 1.44698 0.86708 0.80124 0.81393 0.78874 1.19141 1.23957 1.11601 1.19658 0.89808 1.02902 0.79327 1.31472 0.91108 0.90989 0.96928 1.80990 1.10393 1.11128 1.14840 0.91529 0.91332 0.90159 0.76706 0.83166 0.82890 0.84635 0.89123 0.92297 0.88539 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 7.93 71.98 0.57 -3.61 16 2 C 0.14 4.38 3.40 29.85 0.10 4.48 16 3 H 0.09 3.75 4.52 -2.39 -0.01 3.74 16 4 O -0.57 -16.32 13.03 -148.98 -1.94 -18.26 16 5 C -0.13 -4.12 5.08 -19.71 -0.10 -4.22 16 6 C -0.11 -2.65 9.30 22.25 0.21 -2.44 16 7 C -0.13 -2.91 10.04 22.31 0.22 -2.69 16 8 C -0.12 -3.30 10.04 22.25 0.22 -3.07 16 9 C -0.15 -5.51 9.89 22.43 0.22 -5.29 16 10 C 0.17 6.55 5.01 38.36 0.19 6.74 16 11 N -0.55 -23.24 1.49 -521.69 -0.78 -24.02 16 12 C -0.28 -14.47 8.93 84.04 0.75 -13.72 16 13 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 14 C -0.01 -0.47 5.23 84.86 0.44 -0.02 16 15 N -0.93 -55.10 13.97 21.65 0.30 -54.80 16 16 Si 0.90 37.49 23.94 68.60 1.64 39.13 16 17 H -0.26 -10.22 6.59 99.48 0.66 -9.56 16 18 H -0.31 -13.87 7.11 99.48 0.71 -13.17 16 19 H -0.19 -6.67 3.39 99.48 0.34 -6.33 16 20 C 0.21 7.79 4.52 84.57 0.38 8.17 16 21 C 0.21 8.73 15.65 89.44 1.40 10.13 16 22 N -0.49 -21.61 18.54 20.01 0.37 -21.23 16 23 H 0.07 1.64 5.37 -2.39 -0.01 1.63 16 24 H 0.07 1.59 8.12 -2.39 -0.02 1.57 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.38 6.89 7.32 -74.05 -0.54 6.35 16 27 H 0.15 2.56 6.43 -2.91 -0.02 2.54 16 28 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 30 H 0.09 3.64 8.06 -2.92 -0.02 3.62 16 31 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 32 H 0.10 3.74 2.85 -2.38 -0.01 3.73 16 33 H 0.14 3.76 6.37 -2.39 -0.02 3.75 16 Total: -1.00 -67.71 272.73 4.40 -63.31 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: 0.19 Total: 21.41 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 4.62 Total: -5.55 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -0.11 Total: -100.05 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.94 Total: -18.26 kcal Atomic # 14 Polarization: 37.49 SS G_CDS: 1.64 Total: 39.13 kcal Total: -67.71 4.40 -63.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035650444.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.592 kcal (2) G-P(sol) polarization free energy of solvation -67.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds