Wall clock time and date at job start Mon Mar 30 2020 04:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46902 * 109.47278 * 2 1 4 4 C 1.46900 * 110.99633 * 180.02562 * 3 2 1 5 5 H 1.08995 * 110.46317 * 32.38713 * 4 3 2 6 6 C 1.51134 * 110.51128 * 154.99767 * 4 3 2 7 7 C 1.37644 * 132.87908 * 298.74126 * 6 4 3 8 8 C 1.38419 * 119.92360 * 180.02562 * 7 6 4 9 9 C 1.38334 * 119.84006 * 359.97438 * 8 7 6 10 10 C 1.37905 * 120.38369 * 359.97438 * 9 8 7 11 11 C 1.38993 * 106.32050 * 118.77541 * 6 4 3 12 12 N 1.39390 * 110.23438 * 0.02562 * 11 6 4 13 13 C 1.37138 * 123.85851 * 179.72668 * 12 11 6 14 14 H 1.07995 * 120.00300 * 326.39734 * 13 12 11 15 15 C 1.38897 * 119.99665 * 146.40329 * 13 12 11 16 16 N 1.31426 * 119.99905 * 339.95177 * 15 13 12 17 17 Si 1.86800 * 119.99936 * 159.95005 * 15 13 12 18 18 H 1.48502 * 109.46867 * 90.00159 * 17 15 13 19 19 H 1.48500 * 109.47017 * 209.99951 * 17 15 13 20 20 H 1.48497 * 109.47382 * 330.00013 * 17 15 13 21 21 C 1.34370 * 112.27776 * 359.97438 * 12 11 6 22 22 O 1.21279 * 126.44085 * 180.02562 * 21 12 11 23 23 H 1.09001 * 109.47155 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46597 * 300.00166 * 1 2 3 25 25 H 1.08994 * 109.46973 * 59.99675 * 1 2 3 26 26 H 1.08997 * 109.47036 * 239.99878 * 2 1 3 27 27 H 1.09007 * 109.47150 * 120.00207 * 2 1 3 28 28 H 1.00896 * 110.99380 * 303.95480 * 3 2 1 29 29 H 1.08007 * 120.03812 * 0.02562 * 7 6 4 30 30 H 1.08000 * 120.08076 * 179.97438 * 8 7 6 31 31 H 1.07996 * 119.80640 * 179.97438 * 9 8 7 32 32 H 1.08000 * 119.94160 * 179.97438 * 10 9 8 33 33 H 0.96997 * 119.99873 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8919 0.5722 -0.5479 6 6 3.9833 2.7206 -0.5989 7 6 3.8414 3.2925 -1.8429 8 6 4.4217 4.5208 -2.1084 9 6 5.1421 5.1695 -1.1215 10 6 5.2852 4.5998 0.1262 11 6 4.7051 3.3617 0.4010 12 7 4.7086 2.5913 1.5626 13 6 5.3443 2.9583 2.7210 14 1 6.2646 3.5216 2.6767 15 6 4.8046 2.6053 3.9512 16 7 3.5335 2.2839 4.0432 17 14 5.8852 2.5873 5.4747 18 1 5.8502 3.9233 6.1221 19 1 5.3832 1.5631 6.4256 20 1 7.2813 2.2613 5.0876 21 6 4.0222 1.4454 1.4159 22 8 3.8606 0.5894 2.2597 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 1.6442 1.9012 -0.7814 29 1 3.2779 2.7834 -2.6109 30 1 4.3123 4.9717 -3.0837 31 1 5.5949 6.1276 -1.3294 32 1 5.8495 5.1123 0.8912 33 1 3.1565 2.0378 4.9023 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042066849.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:18 Heat of formation + Delta-G solvation = 15.251571 kcal Electronic energy + Delta-G solvation = -17926.873786 eV Core-core repulsion = 15146.022181 eV Total energy + Delta-G solvation = -2780.851605 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48810 -37.23172 -35.80054 -34.55093 -32.69054 -31.22753 -29.26683 -28.37656 -26.26755 -24.31379 -21.83048 -21.46599 -20.74762 -19.86245 -17.35735 -16.12686 -15.82070 -15.30738 -14.88152 -14.65470 -14.40478 -13.76087 -13.54740 -13.28522 -13.18013 -12.62304 -12.18896 -11.97684 -11.70141 -11.61140 -11.48165 -11.08862 -10.94268 -10.87874 -10.71192 -10.39425 -10.12265 -9.68501 -8.93873 -8.56191 -8.32661 -7.69525 -6.97392 -6.32163 -4.06520 1.91961 2.05584 3.18873 3.26924 3.30678 3.74643 4.10447 4.56852 4.72882 4.86139 5.03260 5.17524 5.35543 5.42678 5.51268 5.57136 5.63287 5.76068 5.82372 6.02112 6.05244 6.24348 6.41232 6.43636 6.45938 6.61854 6.97685 7.10692 7.15301 7.35592 7.39311 7.56661 7.78685 7.96566 8.60297 8.84749 9.24888 9.89966 10.71189 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017257 B = 0.010737 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.131824 B = 2607.248752 C = 4005.560439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.053 3.947 3 N -0.655 5.655 4 C 0.100 3.900 5 H 0.074 0.926 6 C -0.189 4.189 7 C -0.058 4.058 8 C -0.193 4.193 9 C -0.077 4.077 10 C -0.161 4.161 11 C 0.188 3.812 12 N -0.379 5.379 13 C -0.373 4.373 14 H 0.095 0.905 15 C 0.060 3.940 16 N -0.809 5.809 17 Si 0.922 3.078 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.268 1.268 21 C 0.513 3.487 22 O -0.480 6.480 23 H 0.056 0.944 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.022 0.978 27 H 0.082 0.918 28 H 0.339 0.661 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.120 0.880 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 0.875 -9.958 10.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 N -0.288 5.288 4 C -0.013 4.013 5 H 0.091 0.909 6 C -0.194 4.194 7 C -0.077 4.077 8 C -0.213 4.213 9 C -0.096 4.096 10 C -0.183 4.183 11 C 0.084 3.916 12 N -0.084 5.084 13 C -0.499 4.499 14 H 0.112 0.888 15 C -0.153 4.153 16 N -0.439 5.439 17 Si 0.747 3.253 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.192 1.192 21 C 0.300 3.700 22 O -0.352 6.352 23 H 0.075 0.925 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.101 0.899 28 H 0.158 0.842 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.538 0.271 -8.430 8.574 hybrid contribution 0.579 -0.141 -0.120 0.608 sum -0.959 0.130 -8.550 8.604 Atomic orbital electron populations 1.21730 0.95206 1.01216 1.02204 1.22051 0.95375 0.89406 1.00782 1.60223 1.05109 1.13720 1.49765 1.20893 0.89055 0.95076 0.96269 0.90873 1.19806 1.06085 0.98305 0.95181 1.19975 0.98505 0.95125 0.94078 1.20617 1.04563 0.96736 0.99367 1.20700 0.97699 0.98682 0.92568 1.20272 1.05514 0.94930 0.97614 1.18676 0.93532 0.91513 0.87886 1.41533 1.43737 1.14249 1.08836 1.19236 1.06807 1.42040 0.81828 0.88777 1.25317 0.95056 0.95677 0.99231 1.69980 1.10913 1.36713 1.26280 0.86056 0.80371 0.77958 0.80903 1.20258 1.20566 1.19244 1.19855 0.80696 0.81855 0.87558 1.90541 1.57638 1.40073 1.46980 0.92510 0.91647 0.93255 0.95968 0.89924 0.84172 0.87239 0.86890 0.86684 0.86239 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 10.17 37.16 0.38 -1.64 16 2 C 0.05 0.89 6.26 -3.82 -0.02 0.86 16 3 N -0.66 -12.58 6.35 -108.59 -0.69 -13.27 16 4 C 0.10 2.11 3.31 -69.46 -0.23 1.88 16 5 H 0.07 1.43 7.82 -51.93 -0.41 1.02 16 6 C -0.19 -3.81 5.71 -104.35 -0.60 -4.40 16 7 C -0.06 -0.95 9.91 -39.73 -0.39 -1.34 16 8 C -0.19 -2.94 10.07 -39.48 -0.40 -3.34 16 9 C -0.08 -1.26 10.01 -39.67 -0.40 -1.65 16 10 C -0.16 -3.20 9.80 -39.25 -0.38 -3.59 16 11 C 0.19 4.31 6.64 -83.69 -0.56 3.76 16 12 N -0.38 -10.13 2.80 -58.79 -0.16 -10.30 16 13 C -0.37 -10.39 9.52 -14.93 -0.14 -10.53 16 14 H 0.09 2.46 7.91 -52.49 -0.42 2.05 16 15 C 0.06 1.69 4.76 -17.48 -0.08 1.61 16 16 N -0.81 -24.09 11.24 55.49 0.62 -23.47 16 17 Si 0.92 21.31 29.60 -169.99 -5.03 16.28 16 18 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 21 C 0.51 13.69 7.14 -10.82 -0.08 13.62 16 22 O -0.48 -14.24 15.00 5.56 0.08 -14.16 16 23 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 27 H 0.08 1.63 7.80 -51.92 -0.40 1.22 16 28 H 0.34 5.64 8.30 -39.29 -0.33 5.31 16 29 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 30 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.12 2.32 8.04 -52.49 -0.42 1.89 16 33 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 284.45 15.07 4.29 4.29 Total: -1.00 -32.24 284.45 -7.86 -40.10 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -4.07 Total: 5.30 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -2.90 Total: -4.77 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.23 Total: -47.04 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: 0.08 Total: -14.16 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.28 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -32.24 -7.86 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042066849.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.350 kcal (2) G-P(sol) polarization free energy of solvation -32.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds