Wall clock time and date at job start Mon Mar 30 2020 03:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38465 * 120.08164 * 2 1 4 4 C 1.37594 * 119.91811 * 180.02562 * 3 2 1 5 5 C 1.39028 * 120.80756 * 359.97438 * 4 3 2 6 6 C 1.39413 * 118.93023 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93940 * 179.97438 * 6 5 4 8 8 C 1.37946 * 120.11982 * 0.03034 * 6 5 4 9 9 N 1.39389 * 110.22369 * 179.97438 * 5 4 3 10 10 C 1.37141 * 123.85571 * 180.02562 * 9 5 4 11 11 H 1.07995 * 120.00742 * 39.88519 * 10 9 5 12 12 C 1.38895 * 119.99837 * 219.88705 * 10 9 5 13 13 N 1.31418 * 119.99981 * 13.14991 * 12 10 9 14 14 Si 1.86804 * 119.99988 * 193.15845 * 12 10 9 15 15 H 1.48490 * 109.47372 * 89.99568 * 14 12 10 16 16 H 1.48500 * 109.46999 * 209.99957 * 14 12 10 17 17 H 1.48507 * 109.46899 * 329.99289 * 14 12 10 18 18 C 1.34357 * 112.28370 * 0.02562 * 9 5 4 19 19 O 1.21290 * 126.43578 * 179.97438 * 18 9 5 20 20 C 1.51137 * 132.87425 * 179.97438 * 4 3 2 21 21 H 1.09000 * 110.51180 * 298.65512 * 20 4 3 22 22 N 1.46898 * 110.51645 * 61.24126 * 20 4 3 23 23 H 1.09002 * 109.46912 * 89.99776 * 1 2 3 24 24 H 1.09004 * 109.47186 * 209.99818 * 1 2 3 25 25 H 1.08992 * 109.47223 * 330.00261 * 1 2 3 26 26 H 1.08002 * 120.03705 * 0.04150 * 3 2 1 27 27 H 1.09000 * 109.46800 * 275.89166 * 7 6 5 28 28 H 1.09003 * 109.47456 * 35.88934 * 7 6 5 29 29 H 1.08997 * 109.47250 * 155.89397 * 7 6 5 30 30 H 1.07998 * 119.81324 * 179.97438 * 8 6 5 31 31 H 0.97003 * 120.00253 * 180.02562 * 13 12 10 32 32 H 1.00903 * 111.00079 * 178.09261 * 22 20 4 33 33 H 1.00899 * 110.99850 * 302.03840 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2011 1.1982 0.0000 4 6 3.5770 1.1942 -0.0005 5 6 4.2856 -0.0019 -0.0005 6 6 3.5796 -1.2040 0.0005 7 6 4.3248 -2.5139 0.0000 8 6 2.2002 -1.1967 0.0010 9 7 5.6565 0.2502 -0.0017 10 6 6.6139 -0.7317 -0.0025 11 1 6.4767 -1.6194 -0.6021 12 6 7.7602 -0.5846 0.7679 13 7 7.8185 0.3532 1.6868 14 14 9.2192 -1.7194 0.4977 15 1 10.1258 -1.1270 -0.5182 16 1 9.9545 -1.8932 1.7761 17 1 8.7370 -3.0405 0.0206 18 6 5.9327 1.5651 -0.0020 19 8 7.0358 2.0695 -0.0025 20 6 4.6085 2.2989 -0.0012 21 1 4.5110 2.9120 -0.8971 22 7 4.4765 3.1272 1.2048 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6630 2.1346 0.0007 27 1 4.5949 -2.7777 -1.0225 28 1 5.2288 -2.4180 0.6013 29 1 3.6896 -3.2935 0.4206 30 1 1.6582 -2.1308 0.0014 31 1 8.6192 0.4562 2.2246 32 1 5.1818 3.8484 1.2271 33 1 3.5513 3.5242 1.2713 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042068711.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:55 Heat of formation + Delta-G solvation = 4.789023 kcal Electronic energy + Delta-G solvation = -18070.122288 eV Core-core repulsion = 15288.816992 eV Total energy + Delta-G solvation = -2781.305295 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52576 -37.56607 -34.88984 -34.43246 -32.45690 -31.71780 -30.09976 -26.94495 -26.60597 -25.22579 -23.84390 -20.34818 -20.23099 -19.69483 -17.31067 -16.19679 -15.44667 -15.05723 -14.99300 -14.52123 -13.90814 -13.60291 -13.40980 -13.19161 -12.88549 -12.63378 -12.40109 -12.18897 -12.06015 -11.69903 -11.29019 -11.16617 -11.09357 -10.93526 -10.45193 -10.39855 -10.17715 -9.38695 -8.78595 -8.54937 -8.18789 -7.91747 -6.80193 -6.28968 -4.10752 1.96033 2.05294 3.19063 3.25060 3.27155 3.75378 4.09197 4.57064 4.74202 5.01996 5.11937 5.24380 5.36830 5.42085 5.54905 5.67894 5.82595 5.90217 5.95650 6.04030 6.12772 6.25829 6.40752 6.57249 6.61675 6.93367 7.07864 7.14636 7.29470 7.39348 7.47954 7.61447 7.85851 8.01733 8.62422 8.83182 9.23651 9.89841 10.73740 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.009351 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.056354 B = 2993.488726 C = 3897.410910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.155 4.155 3 C -0.061 4.061 4 C -0.166 4.166 5 C 0.183 3.817 6 C -0.117 4.117 7 C -0.111 4.111 8 C -0.082 4.082 9 N -0.377 5.377 10 C -0.368 4.368 11 H 0.099 0.901 12 C 0.058 3.942 13 N -0.820 5.820 14 Si 0.922 3.078 15 H -0.275 1.275 16 H -0.282 1.282 17 H -0.268 1.268 18 C 0.511 3.489 19 O -0.488 6.488 20 C 0.100 3.900 21 H 0.064 0.936 22 N -0.815 5.815 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.109 0.891 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.115 0.885 31 H 0.271 0.729 32 H 0.347 0.653 33 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 -0.462 -2.825 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.157 4.157 3 C -0.081 4.081 4 C -0.170 4.170 5 C 0.080 3.920 6 C -0.121 4.121 7 C -0.168 4.168 8 C -0.101 4.101 9 N -0.083 5.083 10 C -0.494 4.494 11 H 0.117 0.883 12 C -0.155 4.155 13 N -0.451 5.451 14 Si 0.748 3.252 15 H -0.201 1.201 16 H -0.208 1.208 17 H -0.192 1.192 18 C 0.299 3.701 19 O -0.361 6.361 20 C -0.014 4.014 21 H 0.081 0.919 22 N -0.347 5.347 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.127 0.873 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.066 0.934 30 H 0.133 0.867 31 H 0.081 0.919 32 H 0.160 0.840 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.551 -0.767 -2.261 9.845 hybrid contribution 0.526 0.334 -0.613 0.874 sum -9.025 -0.433 -2.874 9.482 Atomic orbital electron populations 1.20539 0.91912 1.01684 1.01072 1.19379 0.95058 0.92764 1.08498 1.19801 0.91425 0.97000 0.99827 1.19656 0.93352 0.93937 1.10088 1.18540 0.85716 0.93451 0.94308 1.19074 0.92737 0.93535 1.06756 1.20890 1.01239 0.92713 1.01926 1.20474 0.92443 0.96979 1.00240 1.41346 1.01815 1.06350 1.58761 1.19373 0.98976 1.01885 1.29198 0.88314 1.25430 0.99518 0.96868 0.93644 1.69927 1.28257 1.30127 1.16742 0.86030 0.81251 0.79952 0.77956 1.20069 1.20760 1.19240 1.19865 0.88720 0.82581 0.78972 1.90561 1.25928 1.71484 1.48128 1.20696 0.94427 0.93695 0.92568 0.91877 1.58367 1.08206 1.28624 1.39488 0.92461 0.92414 0.92491 0.87260 0.92560 0.88902 0.93376 0.86744 0.91892 0.83961 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 10.02 36.01 0.36 -0.78 16 2 C -0.16 -2.49 5.89 -104.52 -0.62 -3.10 16 3 C -0.06 -1.05 9.70 -39.73 -0.39 -1.44 16 4 C -0.17 -3.42 5.95 -104.35 -0.62 -4.04 16 5 C 0.18 4.23 6.61 -83.69 -0.55 3.68 16 6 C -0.12 -2.38 5.91 -104.29 -0.62 -2.99 16 7 C -0.11 -2.08 8.59 36.01 0.31 -1.77 16 8 C -0.08 -1.41 9.30 -39.67 -0.37 -1.78 16 9 N -0.38 -10.00 2.77 -58.79 -0.16 -10.16 16 10 C -0.37 -10.00 7.59 -14.93 -0.11 -10.11 16 11 H 0.10 2.51 6.19 -52.49 -0.33 2.19 16 12 C 0.06 1.59 4.92 -17.49 -0.09 1.50 16 13 N -0.82 -24.26 11.30 55.49 0.63 -23.63 16 14 Si 0.92 21.04 29.57 -169.99 -5.03 16.01 16 15 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 18 C 0.51 13.61 7.08 -10.83 -0.08 13.53 16 19 O -0.49 -14.45 15.63 5.55 0.09 -14.36 16 20 C 0.10 2.12 4.11 -69.46 -0.29 1.84 16 21 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 22 N -0.81 -15.34 9.29 -6.17 -0.06 -15.40 16 23 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 25 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 26 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 27 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 28 H 0.09 1.99 5.81 -51.93 -0.30 1.69 16 29 H 0.05 0.75 8.04 -51.93 -0.42 0.33 16 30 H 0.11 1.63 8.05 -52.49 -0.42 1.21 16 31 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.35 6.23 9.07 -39.29 -0.36 5.87 16 33 H 0.34 5.10 9.03 -39.29 -0.35 4.74 16 LS Contribution 278.62 15.07 4.20 4.20 Total: -1.00 -32.45 278.62 -7.22 -39.68 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -3.84 Total: 9.12 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -3.05 Total: -5.46 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: 0.41 Total: -49.19 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: 0.09 Total: -14.36 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.45 -7.22 -39.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042068711.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.468 kcal (2) G-P(sol) polarization free energy of solvation -32.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds