Wall clock time and date at job start Mon Mar 30 2020 03:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38465 * 120.08164 * 2 1 4 4 C 1.37594 * 119.91811 * 180.02562 * 3 2 1 5 5 C 1.39028 * 120.80756 * 359.97438 * 4 3 2 6 6 C 1.39413 * 118.93023 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.93940 * 179.97438 * 6 5 4 8 8 C 1.37946 * 120.11982 * 0.03034 * 6 5 4 9 9 N 1.39389 * 110.22369 * 179.97438 * 5 4 3 10 10 C 1.37141 * 123.85571 * 180.02562 * 9 5 4 11 11 H 1.07995 * 120.00742 * 39.88519 * 10 9 5 12 12 C 1.38895 * 119.99837 * 219.88705 * 10 9 5 13 13 N 1.31418 * 119.99981 * 13.14991 * 12 10 9 14 14 Si 1.86804 * 119.99988 * 193.15845 * 12 10 9 15 15 H 1.48490 * 109.47372 * 89.99568 * 14 12 10 16 16 H 1.48500 * 109.46999 * 209.99957 * 14 12 10 17 17 H 1.48507 * 109.46899 * 329.99289 * 14 12 10 18 18 C 1.34357 * 112.28370 * 0.02562 * 9 5 4 19 19 O 1.21290 * 126.43578 * 179.97438 * 18 9 5 20 20 C 1.51137 * 132.87425 * 179.97438 * 4 3 2 21 21 H 1.09000 * 110.51180 * 298.65512 * 20 4 3 22 22 N 1.46898 * 110.51645 * 61.24126 * 20 4 3 23 23 H 1.09002 * 109.46912 * 89.99776 * 1 2 3 24 24 H 1.09004 * 109.47186 * 209.99818 * 1 2 3 25 25 H 1.08992 * 109.47223 * 330.00261 * 1 2 3 26 26 H 1.08002 * 120.03705 * 0.04150 * 3 2 1 27 27 H 1.09000 * 109.46800 * 275.89166 * 7 6 5 28 28 H 1.09003 * 109.47456 * 35.88934 * 7 6 5 29 29 H 1.08997 * 109.47250 * 155.89397 * 7 6 5 30 30 H 1.07998 * 119.81324 * 179.97438 * 8 6 5 31 31 H 0.97003 * 120.00253 * 180.02562 * 13 12 10 32 32 H 1.00903 * 111.00079 * 178.09261 * 22 20 4 33 33 H 1.00899 * 110.99850 * 302.03840 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2011 1.1982 0.0000 4 6 3.5770 1.1942 -0.0005 5 6 4.2856 -0.0019 -0.0005 6 6 3.5796 -1.2040 0.0005 7 6 4.3248 -2.5139 0.0000 8 6 2.2002 -1.1967 0.0010 9 7 5.6565 0.2502 -0.0017 10 6 6.6139 -0.7317 -0.0025 11 1 6.4767 -1.6194 -0.6021 12 6 7.7602 -0.5846 0.7679 13 7 7.8185 0.3532 1.6868 14 14 9.2192 -1.7194 0.4977 15 1 10.1258 -1.1270 -0.5182 16 1 9.9545 -1.8932 1.7761 17 1 8.7370 -3.0405 0.0206 18 6 5.9327 1.5651 -0.0020 19 8 7.0358 2.0695 -0.0025 20 6 4.6085 2.2989 -0.0012 21 1 4.5110 2.9120 -0.8971 22 7 4.4765 3.1272 1.2048 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.6630 2.1346 0.0007 27 1 4.5949 -2.7777 -1.0225 28 1 5.2288 -2.4180 0.6013 29 1 3.6896 -3.2935 0.4206 30 1 1.6582 -2.1308 0.0014 31 1 8.6192 0.4562 2.2246 32 1 5.1818 3.8484 1.2271 33 1 3.5513 3.5242 1.2713 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042068711.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:55 Heat of formation + Delta-G solvation = -18.317156 kcal Electronic energy + Delta-G solvation = -18071.124247 eV Core-core repulsion = 15288.816992 eV Total energy + Delta-G solvation = -2782.307255 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.20036 -39.20558 -36.69818 -36.09999 -34.20761 -33.31720 -31.60284 -28.64278 -27.95346 -26.78987 -25.61324 -21.96353 -21.76790 -21.40170 -19.09951 -17.87903 -17.21273 -16.81715 -16.60055 -16.23529 -15.49592 -15.10282 -14.83392 -14.75269 -14.43458 -14.31182 -13.81498 -13.74166 -13.51950 -13.23880 -12.97407 -12.82425 -12.60413 -12.44928 -12.14942 -12.04847 -11.65117 -11.18711 -10.65954 -10.32085 -9.77571 -9.40476 -8.58580 -8.25239 -6.17731 0.44717 0.58122 1.33569 1.39552 1.48676 2.00836 2.26751 2.87034 2.97299 3.24599 3.51688 3.64567 3.76417 4.11975 4.16973 4.28150 4.56529 4.58238 4.72051 4.86075 4.91871 5.00519 5.06024 5.19999 5.30875 5.33048 5.49092 5.60869 5.74918 5.83653 5.94844 6.02681 6.27574 6.55833 6.69735 6.90517 7.28319 7.98327 8.71296 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025799 B = 0.009351 C = 0.007183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.056354 B = 2993.488726 C = 3897.410910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.131 4.131 3 C -0.064 4.064 4 C -0.167 4.167 5 C 0.126 3.874 6 C -0.129 4.129 7 C -0.107 4.107 8 C -0.085 4.085 9 N -0.400 5.400 10 C -0.376 4.376 11 H 0.105 0.895 12 C 0.000 4.000 13 N -0.867 5.867 14 Si 0.988 3.012 15 H -0.281 1.281 16 H -0.279 1.279 17 H -0.244 1.244 18 C 0.483 3.517 19 O -0.545 6.545 20 C 0.111 3.889 21 H 0.083 0.917 22 N -0.821 5.821 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.146 0.854 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.080 0.920 30 H 0.150 0.850 31 H 0.265 0.735 32 H 0.350 0.650 33 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.371 -1.552 -3.328 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.133 4.133 3 C -0.083 4.083 4 C -0.171 4.171 5 C 0.027 3.973 6 C -0.132 4.132 7 C -0.164 4.164 8 C -0.103 4.103 9 N -0.107 5.107 10 C -0.503 4.503 11 H 0.123 0.877 12 C -0.206 4.206 13 N -0.500 5.500 14 Si 0.811 3.189 15 H -0.208 1.208 16 H -0.204 1.204 17 H -0.167 1.167 18 C 0.272 3.728 19 O -0.423 6.423 20 C -0.003 4.003 21 H 0.100 0.900 22 N -0.357 5.357 23 H 0.095 0.905 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.164 0.836 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.168 0.832 31 H 0.074 0.926 32 H 0.164 0.836 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.350 -1.894 -2.776 13.767 hybrid contribution 1.349 0.623 -0.497 1.567 sum -12.001 -1.270 -3.272 12.504 Atomic orbital electron populations 1.20659 0.88129 1.03498 1.02884 1.20025 0.97629 0.91751 1.03872 1.20255 0.89925 0.99339 0.98786 1.19887 0.94638 0.92544 1.09988 1.18994 0.84559 0.95804 0.97984 1.19492 0.94314 0.93053 1.06342 1.20818 1.00365 0.93374 1.01807 1.20911 0.91096 0.99221 0.99090 1.41522 1.03272 1.06268 1.59635 1.19731 0.99706 1.02239 1.28586 0.87705 1.26438 1.02430 0.98432 0.93324 1.70082 1.28655 1.32763 1.18494 0.85031 0.77427 0.78829 0.77648 1.20750 1.20384 1.16748 1.20762 0.90018 0.83360 0.78660 1.90486 1.28161 1.72472 1.51181 1.20470 0.91749 0.94026 0.94059 0.89958 1.58269 1.09810 1.28934 1.38655 0.90455 0.90701 0.90769 0.83609 0.92062 0.92373 0.90073 0.83193 0.92579 0.83637 0.82386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.65 10.02 71.24 0.71 -0.94 16 2 C -0.13 -3.55 5.89 -19.80 -0.12 -3.67 16 3 C -0.06 -1.95 9.70 22.17 0.22 -1.74 16 4 C -0.17 -6.67 5.95 -19.69 -0.12 -6.79 16 5 C 0.13 5.86 6.61 38.41 0.25 6.12 16 6 C -0.13 -5.03 5.91 -19.65 -0.12 -5.15 16 7 C -0.11 -3.91 8.59 71.24 0.61 -3.30 16 8 C -0.08 -2.55 9.30 22.21 0.21 -2.35 16 9 N -0.40 -22.05 2.77 -458.54 -1.27 -23.32 16 10 C -0.38 -21.35 7.59 84.02 0.64 -20.71 16 11 H 0.11 5.54 6.19 -2.91 -0.02 5.53 16 12 C 0.00 0.01 4.92 84.91 0.42 0.43 16 13 N -0.87 -54.33 11.30 21.65 0.24 -54.09 16 14 Si 0.99 44.92 29.57 68.60 2.03 46.94 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.24 -9.99 7.11 99.48 0.71 -9.29 16 18 C 0.48 26.96 7.08 87.94 0.62 27.58 16 19 O -0.54 -34.44 15.63 -3.06 -0.05 -34.48 16 20 C 0.11 4.72 4.11 43.78 0.18 4.90 16 21 H 0.08 3.12 8.14 -2.39 -0.02 3.10 16 22 N -0.82 -30.76 9.29 -173.43 -1.61 -32.37 16 23 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.07 1.12 8.09 -2.38 -0.02 1.10 16 25 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 26 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 27 H 0.06 2.12 8.04 -2.39 -0.02 2.10 16 28 H 0.06 2.53 5.81 -2.39 -0.01 2.52 16 29 H 0.08 2.34 8.04 -2.39 -0.02 2.32 16 30 H 0.15 3.43 8.05 -2.91 -0.02 3.41 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.35 12.79 9.07 -89.69 -0.81 11.98 16 33 H 0.36 10.21 9.03 -89.69 -0.81 9.40 16 Total: -1.00 -76.36 278.62 2.39 -73.97 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: -0.47 Total: 28.95 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 3.51 Total: -5.60 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -2.64 Total: -109.78 kcal Atomic # 8 Polarization: -34.44 SS G_CDS: -0.05 Total: -34.48 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -76.36 2.39 -73.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042068711.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.654 kcal (2) G-P(sol) polarization free energy of solvation -76.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds